Rmu_sc0001712.1_g000005

Belongs to the eukaryotic ribosomal protein eL27 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001712.1
N/A
Physical Location & Seq
Forward (+)
24563 .. 32193
7631 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1155 bp
atgaaaattaagaagtgcgagtatgatcaagctctggtctctgatatagatggccggcggcgagacgaggtcgatgatgacgtcgatgaaggtgatatggcgagccttgacatcgacgcattgcattcacatgacaagaatgtcaccgccgccaaggagatcaaggccagattggaggaccggttcaagagtggcaagaaccagtgcctgagattggaggcactgcgtcggtctgtcggatgggcgagcggatcttccttgactcaaactaggtcgtgtggcagcggcggctccggcagtatcactagggttccggctcttgctagtttgggtgtgggggcgagggtatggggtagtggattaggctctttgcttcagcccatttttccctcctctctttggcctgggctcatttgggctggttctctagttgtgcttggtgtgggccagcctgtgattcttcaggctcgatttctgggttttggattcaatgattcttcaagctcagtgattcttcaactcttcactcttgttagaaactcggttggaggaccaaccaaccgagcttctcgctccggtaccgaaccgaacctagccctacagtggtacctagcatttgttttagagtctggtgctatgtacgttagcttctctagtcgtacaacaattgaggtctctaggcgacgatttgaagcgtggaggaagaatcgacggtttgaagtttgggatatggtggttgaccggtggcacgccgcacgtgggcccaggagcaacctcttgtggcggcgcatgagggcgcgtccagtcgttcctggtgggccctgcagggccactttagatttcaaggtgaaatccggggtagatcctgtcatagatagtttgggttttgaacatttagctaggcactttaataagtgttcgtattctactatgaggttgtggatgccggtcagccccattcgagatttggatttgtacaagttggatgggaaacttccctcgtgtcattatgctggtatggctctatttgaaacttcctatcttcctaagaaagttgaagctgattttcatcttggtgaagagcaacgctggattcgtggagaacccaatgtgaacattgttggtttctgtccaactaattattacttgctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW Ribosomal_L27e

Protein Analysis

384

Amino Acids

42.86

Weight (kDa)

9.39

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 1 cut(s) 84
Acc65I GGTACC 2 cut(s) 578, 606
AccB1I GGYRCC 2 cut(s) 578, 606
AccBSI CCGCTC 1 cut(s) 249
AccII CGCG 1 cut(s) 799
AciI CCGC 8 cut(s) 58, 147, 150, 249, 285, 288, 753, 784
AclWI GGATC 2 cut(s) 259, 857
AcoI YGGCCR 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 359, 446
AcvI CACGTG 1 cut(s) 758
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 5 cut(s) 580, 608, 641, 661, 977
AfiI CCNNNNNNNGG 4 cut(s) 214, 399, 603, 759
AgeI ACCGGT 2 cut(s) 180, 741
AjnI CCWGG 3 cut(s) 403, 764, 811
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 6 cut(s) 32, 504, 566, 648, 899, 1061
AluI AGCT 6 cut(s) 32, 504, 566, 648, 899, 1061
Alw26I GTCTC 3 cut(s) 43, 57, 679
AlwI GGATC 2 cut(s) 259, 857
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 7 cut(s) 52, 165, 401, 445, 761, 818, 828
ApaI GGGCCC 2 cut(s) 765, 822
ApeKI GCWGC 1 cut(s) 282
AsiGI ACCGGT 2 cut(s) 180, 741
Asp718I GGTACC 2 cut(s) 578, 606
AspLEI GCGC 2 cut(s) 789, 799
AspS9I GGNCC 8 cut(s) 178, 445, 551, 761, 762, 818, 819, 828
AsuC2I CCSGG 1 cut(s) 856
AsuHPI GGTGA 4 cut(s) 104, 136, 859, 1088
AvaII GGWCC 2 cut(s) 178, 551
BaeGI GKGCMC 2 cut(s) 765, 822
BaeI ACNNNNGTAYC 2 cut(s) 590, 623
BanI GGYRCC 2 cut(s) 578, 606
BanII GRGCYC 3 cut(s) 411, 765, 822
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BauI CACGAG 1 cut(s) 1000
BbrPI CACGTG 1 cut(s) 758
BbvI GCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 44, 234, 980
BciT130I CCWGG 3 cut(s) 405, 766, 813
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 856
BcoDI GTCTC 3 cut(s) 43, 57, 679
BfaI CTAG 9 cut(s) 270, 306, 324, 428, 593, 611, 654, 678, 900
BfmI CTRYAG 2 cut(s) 599, 823
BisI GCNGC 7 cut(s) 59, 150, 283, 286, 289, 753, 785
BlsI GCNGC 7 cut(s) 60, 151, 284, 287, 290, 754, 786
Bme1390I CCNGG 4 cut(s) 405, 766, 813, 856
Bme18I GGWCC 2 cut(s) 178, 551
BmgT120I GGNCC 8 cut(s) 178, 445, 551, 761, 762, 818, 819, 828
BmiI GGNNCC 6 cut(s) 292, 312, 580, 608, 763, 820
BmrFI CCNGG 4 cut(s) 405, 766, 813, 856
BmsI GCATC 1 cut(s) 933
BpuMI CCSGG 1 cut(s) 856
BsaAI YACGTR 1 cut(s) 758
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 2 cut(s) 43, 679
BsaJI CCNNGG 4 cut(s) 153, 404, 764, 855
BsaWI WCCGGW 3 cut(s) 180, 575, 741
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 399, 603, 759
Bse118I RCCGGY 4 cut(s) 54, 180, 741, 946
Bse1I ACTGG 2 cut(s) 202, 803
Bse3DI GCAATG 1 cut(s) 119
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 3 cut(s) 405, 766, 813
BseDI CCNNGG 4 cut(s) 153, 404, 764, 855
BseGI GGATG 3 cut(s) 245, 948, 991
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 4 cut(s) 214, 399, 603, 759
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 2 cut(s) 200, 519
BseNI ACTGG 2 cut(s) 202, 803
BseRI GAGGAG 1 cut(s) 382
BseSI GKGCMC 2 cut(s) 765, 822
BseXI GCAGC 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 799
BshFI GGCC 7 cut(s) 54, 167, 403, 447, 763, 820, 830
BshNI GGYRCC 2 cut(s) 578, 606
BshTI ACCGGT 2 cut(s) 180, 741
BsiSI CCGG 8 cut(s) 55, 181, 294, 314, 576, 742, 855, 947
BslI CCNNNNNNNGG 4 cut(s) 214, 399, 603, 759
BsmAI GTCTC 3 cut(s) 43, 57, 679
BsmBI CGTCTC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 7 cut(s) 54, 167, 403, 447, 763, 820, 830
Bso31I GGTCTC 2 cut(s) 43, 679
Bsp120I GGGCCC 2 cut(s) 761, 818
Bsp1286I GDGCHC 3 cut(s) 411, 765, 822
Bsp1407I TGTACA 1 cut(s) 975
Bsp143I GATC 4 cut(s) 25, 159, 251, 862
BspACI CCGC 8 cut(s) 58, 147, 150, 249, 285, 288, 753, 784
BspANI GGCC 7 cut(s) 54, 167, 403, 447, 763, 820, 830
BspCNI CTCAG 2 cut(s) 201, 518
BspFNI CGCG 1 cut(s) 799
BspLI GGNNCC 6 cut(s) 292, 312, 580, 608, 763, 820
BspMAI CTGCAG 1 cut(s) 827
BspPI GGATC 2 cut(s) 259, 857
BspQI GCTCTTC 1 cut(s) 1074
BspT107I GGYRCC 2 cut(s) 578, 606
BspTNI GGTCTC 2 cut(s) 43, 679
BsrBI CCGCTC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 119
BsrFI RCCGGY 4 cut(s) 54, 180, 741, 946
BsrGI TGTACA 1 cut(s) 975
BsrI ACTGG 2 cut(s) 202, 803
BssAI RCCGGY 4 cut(s) 54, 180, 741, 946
BssECI CCNNGG 4 cut(s) 153, 404, 764, 855
BssMI GATC 4 cut(s) 25, 159, 251, 862
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 1000
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 1000
Bst2UI CCWGG 3 cut(s) 405, 766, 813
Bst4CI ACNGT 2 cut(s) 603, 714
Bst6I CTCTTC 2 cut(s) 527, 1074
BstACI GRCGYC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 975
BstBAI YACGTR 1 cut(s) 758
BstC8I GCNNGC 5 cut(s) 56, 103, 247, 449, 750
BstDEI CTNAG 3 cut(s) 209, 505, 1047
BstF5I GGATG 3 cut(s) 245, 948, 991
BstFNI CGCG 1 cut(s) 799
BstHHI GCGC 2 cut(s) 789, 799
BstKTI GATC 4 cut(s) 28, 162, 254, 865
BstMAI GTCTC 3 cut(s) 43, 57, 679
BstMBI GATC 4 cut(s) 25, 159, 251, 862
BstMWI GCNNNNNNNGC 3 cut(s) 288, 294, 1019
BstNI CCWGG 3 cut(s) 405, 766, 813
BstSCI CCNGG 4 cut(s) 403, 764, 811, 854
BstSFI CTRYAG 2 cut(s) 599, 823
BstSLI GKGCMC 2 cut(s) 765, 822
BstUI CGCG 1 cut(s) 799
BstV1I GCAGC 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 251, 862
BstYI RGATCY 2 cut(s) 251, 862
BsuRI GGCC 7 cut(s) 54, 167, 403, 447, 763, 820, 830
BtsCI GGATG 3 cut(s) 245, 948, 991
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 4 cut(s) 209, 221, 513, 608
Cac8I GCNNGC 5 cut(s) 56, 103, 247, 449, 750
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 2 cut(s) 789, 799
Cfr10I RCCGGY 4 cut(s) 54, 180, 741, 946
Cfr13I GGNCC 8 cut(s) 178, 445, 551, 761, 762, 818, 819, 828
CseI GACGC 3 cut(s) 125, 215, 788
Csp6I GTAC 5 cut(s) 579, 607, 640, 660, 976
CspAI ACCGGT 2 cut(s) 180, 741
CviAII CATG 2 cut(s) 131, 790
CviQI GTAC 5 cut(s) 579, 607, 640, 660, 976
DdeI CTNAG 3 cut(s) 209, 505, 1047
DpnI GATC 4 cut(s) 27, 161, 253, 864
DpnII GATC 4 cut(s) 25, 159, 251, 862
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 527, 1074
EarI CTCTTC 2 cut(s) 527, 1074
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 3 cut(s) 411, 765, 822
Eco31I GGTCTC 2 cut(s) 43, 679
Eco47I GGWCC 2 cut(s) 178, 551
Eco57I CTGAAG 2 cut(s) 359, 446
Eco72I CACGTG 1 cut(s) 758
EcoO109I RGGNCCY 1 cut(s) 819
EcoRII CCWGG 3 cut(s) 403, 764, 811
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 3 cut(s) 411, 765, 822
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 134, 793
FatI CATG 2 cut(s) 130, 789
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 7 cut(s) 59, 150, 283, 286, 289, 753, 785
FokI GGATG 3 cut(s) 252, 955, 998
FriOI GRGCYC 3 cut(s) 411, 765, 822
Fsp4HI GCNGC 7 cut(s) 59, 150, 283, 286, 289, 753, 785
FspBI CTAG 9 cut(s) 270, 306, 324, 428, 593, 611, 654, 678, 900
GlaI GCGC 2 cut(s) 788, 798
GluI GCNGC 7 cut(s) 59, 150, 283, 286, 289, 753, 785
HaeIII GGCC 7 cut(s) 54, 167, 403, 447, 763, 820, 830
HapII CCGG 8 cut(s) 55, 181, 294, 314, 576, 742, 855, 947
HgaI GACGC 3 cut(s) 125, 215, 788
HhaI GCGC 2 cut(s) 789, 799
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 134, 793
Hin6I GCGC 2 cut(s) 787, 797
HinP1I GCGC 2 cut(s) 787, 797
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HinfI GANTC 8 cut(s) 262, 457, 486, 494, 511, 626, 706, 1093
HpaII CCGG 8 cut(s) 55, 181, 294, 314, 576, 742, 855, 947
HphI GGTGA 4 cut(s) 104, 136, 859, 1088
Hpy166II GTNNAC 2 cut(s) 739, 1114
Hpy188I TCNGA 2 cut(s) 43, 239
Hpy188III TCNNGA 2 cut(s) 187, 962
Hpy8I GTNNAC 2 cut(s) 739, 1114
Hpy99I CGWCG 5 cut(s) 86, 119, 231, 687, 714
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 2 cut(s) 603, 714
HpyCH4IV ACGT 3 cut(s) 81, 642, 757
HpyCH4V TGCA 2 cut(s) 124, 825
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 294, 1019
HpyF3I CTNAG 3 cut(s) 209, 505, 1047
HpySE526I ACGT 3 cut(s) 81, 642, 757
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 134, 793
HspAI GCGC 2 cut(s) 787, 797
KpnI GGTACC 2 cut(s) 582, 610
KroI GCCGGC 1 cut(s) 54
KroNI GCCGGC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 4 cut(s) 25, 159, 251, 862
LguI GCTCTTC 1 cut(s) 1074
LmnI GCTCC 3 cut(s) 296, 578, 768
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 933
MaeI CTAG 9 cut(s) 270, 306, 324, 428, 593, 611, 654, 678, 900
MaeII ACGT 3 cut(s) 81, 642, 757
MaeIII GTNAC 1 cut(s) 142
MalI GATC 4 cut(s) 27, 161, 253, 864
MbiI CCGCTC 1 cut(s) 249
MboI GATC 4 cut(s) 25, 159, 251, 862
MboII GAAGA 8 cut(s) 246, 452, 489, 506, 514, 715, 1034, 1091
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 2 cut(s) 251, 862
MhlI GDGCHC 3 cut(s) 411, 765, 822
MluCI AATT 3 cut(s) 6, 666, 1138
MlyI GAGTC 2 cut(s) 256, 635
MmeI TCCRAC 3 cut(s) 217, 526, 963
MroNI GCCGGC 1 cut(s) 54
MseI TTAA 3 cut(s) 9, 909, 1153
MslI CAYNNNNRTG 2 cut(s) 129, 1074
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 8 cut(s) 55, 181, 294, 314, 576, 742, 855, 947
MspR9I CCNGG 4 cut(s) 405, 766, 813, 856
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 3 cut(s) 405, 766, 813
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 3 cut(s) 288, 294, 1019
NaeI GCCGGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 856
NdeII GATC 4 cut(s) 25, 159, 251, 862
NgoMIV GCCGGC 1 cut(s) 54
NlaIII CATG 2 cut(s) 134, 793
NlaIV GGNNCC 6 cut(s) 292, 312, 580, 608, 763, 820
NmuCI GTSAC 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 1074
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 1093
PctI GAATGC 1 cut(s) 124
PdiI GCCGGC 1 cut(s) 56
PfeI GAWTC 6 cut(s) 457, 486, 494, 511, 706, 1093
PflFI GACNNNGTC 1 cut(s) 68
PinAI ACCGGT 2 cut(s) 180, 741
PkrI GCNGC 7 cut(s) 60, 151, 284, 287, 290, 754, 786
PleI GAGTC 2 cut(s) 256, 634
PmaCI CACGTG 1 cut(s) 758
PmlI CACGTG 1 cut(s) 758
PpsI GAGTC 2 cut(s) 256, 634
Ppu21I YACGTR 1 cut(s) 758
Psp6I CCWGG 3 cut(s) 403, 764, 811
PspCI CACGTG 1 cut(s) 758
PspGI CCWGG 3 cut(s) 403, 764, 811
PspN4I GGNNCC 6 cut(s) 292, 312, 580, 608, 763, 820
PspOMI GGGCCC 2 cut(s) 761, 818
PspPI GGNCC 8 cut(s) 178, 445, 551, 761, 762, 818, 819, 828
PstI CTGCAG 1 cut(s) 827
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 2 cut(s) 251, 862
PsyI GACNNNGTC 1 cut(s) 68
RsaI GTAC 5 cut(s) 580, 608, 641, 661, 977
RsaNI GTAC 5 cut(s) 579, 607, 640, 660, 976
RseI CAYNNNNRTG 2 cut(s) 129, 1074
SapI GCTCTTC 1 cut(s) 1074
SaqAI TTAA 3 cut(s) 9, 909, 1153
SatI GCNGC 7 cut(s) 59, 150, 283, 286, 289, 753, 785
Sau3AI GATC 4 cut(s) 25, 159, 251, 862
Sau96I GGNCC 8 cut(s) 178, 445, 551, 761, 762, 818, 819, 828
SbfI CCTGCAGG 1 cut(s) 827
SchI GAGTC 2 cut(s) 256, 635
ScrFI CCNGG 4 cut(s) 405, 766, 813, 856
SdaI CCTGCAGG 1 cut(s) 827
SduI GDGCHC 3 cut(s) 411, 765, 822
SfaNI GCATC 1 cut(s) 933
SfcI CTRYAG 2 cut(s) 599, 823
SinI GGWCC 2 cut(s) 178, 551
SmiMI CAYNNNNRTG 2 cut(s) 129, 1074
Sse8387I CCTGCAGG 1 cut(s) 827
Sse9I AATT 3 cut(s) 6, 666, 1138
SsiI CCGC 8 cut(s) 58, 147, 150, 249, 285, 288, 753, 784
SspMI CTAG 9 cut(s) 270, 306, 324, 428, 593, 611, 654, 678, 900
StyD4I CCNGG 4 cut(s) 403, 764, 811, 854
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 603, 714
TaiI ACGT 3 cut(s) 84, 645, 760
TaqI TCGA 6 cut(s) 72, 84, 114, 469, 709, 961
TaqII GACCGA 1 cut(s) 219
TasI AATT 3 cut(s) 6, 666, 1138
TatI WGTACW 1 cut(s) 975
TauI GCSGC 6 cut(s) 61, 152, 288, 291, 755, 787
TfiI GAWTC 6 cut(s) 457, 486, 494, 511, 706, 1093
Tru1I TTAA 3 cut(s) 9, 909, 1153
Tru9I TTAA 3 cut(s) 9, 909, 1153
TscAI CASTG 4 cut(s) 209, 228, 513, 608
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 17, 102, 1058
TspRI CASTG 4 cut(s) 209, 228, 513, 608
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 2 cut(s) 178, 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 964
XspI CTAG 9 cut(s) 270, 306, 324, 428, 593, 611, 654, 678, 900
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.