Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001716.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

128019 .. 131534

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001716.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgtccactactttctggtttcgggaagcctccatcaacatcacccttctcttcgccaacatcgggattgaacatccatggttacaaaacacaaagaaagccccaaattttccattaggagatattgcaaagcccaggctcaagcagttttcagtagctgatgttgatgggaatggatttttggattatgcagagttcgcagcagttacaattcacttgcaaaaattggagaatgatgaacatctctggagagcatttatattctacgacaaggatggaagtctatctcgatacactacgaggtttatgcttcaatttcactgtattccatgtgttaatgtttttgctttgtatcttgaaggttatgtacctattactcaatggcttcctagtcgttatctcagaagtggaaagagcttatggggaaggcttgctcaaagcaacttcagccccatgagtacagctcagtggtcgagttctggttgggtgttagctagaagaggtggccggcaatggcattgttttgtttcggggtcgccgaagactgcaaatgatgggaacgctatcgacgaagaagagccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

194

Amino Acids

22.19

Weight (kDa)

7.75

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	430
AfaI	GTAC	2 cut(s)	369, 460
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	71, 314, 359
AjnI	CCWGG	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	4 cut(s)	158, 417, 464, 494
AluI	AGCT	4 cut(s)	158, 417, 464, 494
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	505
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	34
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	4 cut(s)	41, 161, 269, 548
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	1 cut(s)	136
BfaI	CTAG	2 cut(s)	390, 495
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	77, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	518
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	77, 134
BseGI	GGATG	2 cut(s)	73, 280
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	2 cut(s)	415, 479
BseXI	GCAGC	1 cut(s)	212
BshFI	GGCC	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	508
BslI	CCNNNNNNNGG	1 cut(s)	63
BsnI	GGCC	1 cut(s)	507
Bsp19I	CCATGG	1 cut(s)	77
BspANI	GGCC	1 cut(s)	507
BspCNI	CTCAG	2 cut(s)	414, 478
BspQI	GCTCTTC	1 cut(s)	570
BsrDI	GCAATG	1 cut(s)	518
BsrFI	RCCGGY	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	77, 134
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	3 cut(s)	56, 493, 570
BstC8I	GCNNGC	2 cut(s)	432, 509
BstDEI	CTNAG	2 cut(s)	401, 465
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	73, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 447
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	73, 280
BtsIMutI	CAGTG	2 cut(s)	319, 473
Cac8I	GCNNGC	2 cut(s)	432, 509
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	368, 459
CviAII	CATG	3 cut(s)	78, 330, 454
CviQI	GTAC	2 cut(s)	368, 459
DdeI	CTNAG	2 cut(s)	401, 465
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	3 cut(s)	56, 493, 570
EarI	CTCTTC	3 cut(s)	56, 493, 570
Eco130I	CCWWGG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	3 cut(s)	81, 333, 457
FaiI	YATR	9 cut(s)	79, 189, 260, 308, 331, 366, 421, 455, 583
FatI	CATG	3 cut(s)	77, 329, 453
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	60, 287
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	390, 495
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	1 cut(s)	508
Hin1II	CATG	3 cut(s)	81, 333, 457
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	5 cut(s)	23, 64, 247, 288, 356
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	3 cut(s)	56, 353, 420
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	4 cut(s)	128, 191, 220, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 447
HpyF3I	CTNAG	2 cut(s)	401, 465
Hsp92II	CATG	3 cut(s)	81, 333, 457
KroI	GCCGGC	1 cut(s)	507
KroNI	GCCGGC	1 cut(s)	509
LguI	GCTCTTC	1 cut(s)	570
LpnPI	CCDG	5 cut(s)	121, 148, 232, 465, 521
Lsp1109I	GCAGC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	390, 495
MaeIII	GTNAC	2 cut(s)	81, 205
MboII	GAAGA	4 cut(s)	43, 510, 553, 584
MluCI	AATT	4 cut(s)	106, 210, 224, 314
MnlI	CCTC	3 cut(s)	40, 294, 494
MroNI	GCCGGC	1 cut(s)	507
MseI	TTAA	1 cut(s)	336
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	197, 447
NaeI	GCCGGC	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	77
NgoMIV	GCCGGC	1 cut(s)	507
NlaIII	CATG	3 cut(s)	81, 333, 457
PciSI	GCTCTTC	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	2 cut(s)	536, 567
PdiI	GCCGGC	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	369, 460
RsaNI	GTAC	2 cut(s)	368, 459
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	8 cut(s)	160, 305, 364, 373, 419, 466, 496, 505
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	4 cut(s)	106, 210, 224, 314
SspMI	CTAG	2 cut(s)	390, 495
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	323
TaqI	TCGA	3 cut(s)	289, 473, 567
TasI	AATT	4 cut(s)	106, 210, 224, 314
TatI	WGTACW	1 cut(s)	458
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	326, 473
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	326, 473
XapI	RAATTY	1 cut(s)	106
XspI	CTAG	2 cut(s)	390, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.