Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001717.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3126

Gene Structure 3126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1126 bp

gtactatttgagatttatggacccaaaaaattcaaaagaattggtggccaagacaaaagaaatgtattggagcccagttgatgtgtatgttggtggtgctgaacatgctgttctccatttactttatgcaagattctggcacaaggttctctatgacattggtgtcgtctccaccaaagaacccttcaagtgtgtcataaatcagggcattattcttggagaagttcaatatatcgcatacaaggactcagatgggaactttgtctctgcagactctgatacatcagctgagcttcaacaagaaataataccggaggaaaaggtcattaaatccggggattcttttgtactaaaagacaatcctgagatctctcttattgcacgttctcataaaatgagtaagagtaggggaaatgttgtcaatcctgatgatgttgtttctgagtacggggccgattcacttcgcttatatgaaatgttcatggggccgttaagagactcaaaacaatggaatacgagtggtattgaaggtgttcatcggtttttgggaagagcctggaggctagttgttggttcgatgttatctgatggtacactcaaagagggaacagtagtgactgatgaggatcccacttcggagcaacttcgttctctacataagtgcattgccaaggtaacagaggaaatagaagcgacgagatttaatactggaatttctgcaatgatggagttcatcaatgtggcatttaagtggaaaaaacatccgagagtgattattgaagcatttgttttattgctcgcaccatatgcacctcatatggctgaggagctttggtttcgcttgggacactcgaaatcattggcatacgaggcttttcctaaggtcaatcctgcttacttggaggaatctactattttgctaccggttcagatcaatggcaagacgaggggtacaatccaggttgaaaagacctgttcggaggaggatgcattcctactggcatcgaaagatggaaagctctccaaatatcttgatggggtgtcaattaaaaagaggattttcgtccctggaaaaatcctgaatgtcatcttggaccgtcaaaacgtcaaggcagctgtgcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

374

Amino Acids

42.18

Weight (kDa)

6.84

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	129 - 159	2.7e-07	tRNA synthetases class I (I, L, M and V)
Anticodon_1	PF08264	215 - 323	3.4e-18	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AclWI	GGATC	2 cut(s)	621, 634
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	29, 712
AfaI	GTAC	5 cut(s)	3, 349, 447, 593, 953
AgeI	ACCGGT	1 cut(s)	923
AgsI	TTSAA	7 cut(s)	34, 188, 228, 297, 528, 780, 966
AjnI	CCWGG	3 cut(s)	555, 958, 1067
AjuI	GAANNNNNNNTTGG	4 cut(s)	168, 200, 1074, 1106
AluBI	AGCT	5 cut(s)	288, 293, 830, 1019, 1116
AluI	AGCT	5 cut(s)	288, 293, 830, 1019, 1116
Alw26I	GTCTC	3 cut(s)	173, 269, 490
AlwI	GGATC	2 cut(s)	621, 634
AlwNI	CAGNNNCTG	1 cut(s)	276
AoxI	GGCC	3 cut(s)	46, 451, 486
ApeKI	GCWGC	1 cut(s)	1113
ApoI	RAATTY	2 cut(s)	29, 712
AsiGI	ACCGGT	1 cut(s)	923
Asp700I	GAANNNNTTC	1 cut(s)	532
AspS9I	GGNCC	4 cut(s)	20, 451, 486, 1094
AsuC2I	CCSGG	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	20, 1094
AxyI	CCTNAGG	1 cut(s)	880
BalI	TGGCCA	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	823
BccI	CCATC	5 cut(s)	246, 582, 719, 1005, 1029
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	3 cut(s)	557, 960, 1069
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	173, 269, 490
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	268
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	1114
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	1115
Bme1390I	CCNGG	4 cut(s)	335, 557, 960, 1069
Bme18I	GGWCC	2 cut(s)	20, 1094
BmgT120I	GGNCC	4 cut(s)	20, 451, 486, 1094
BmiI	GGNNCC	5 cut(s)	22, 72, 452, 487, 628
BmrFI	CCNGG	4 cut(s)	335, 557, 960, 1069
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	977, 1011
BmuI	ACTGGG	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	823
Bpu1102I	GCTNAGC	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	625
BsaJI	CCNNGG	3 cut(s)	334, 670, 1067
BsaWI	WCCGGW	2 cut(s)	311, 923
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bse118I	RCCGGY	1 cut(s)	923
Bse1I	ACTGG	3 cut(s)	75, 713, 1003
Bse21I	CCTNAGG	1 cut(s)	880
Bse3DI	GCAATG	2 cut(s)	664, 727
Bse8I	GATNNNNATC	1 cut(s)	625
BseBI	CCWGG	3 cut(s)	557, 960, 1069
BseDI	CCNNGG	3 cut(s)	334, 670, 1067
BseGI	GGATG	2 cut(s)	761, 992
BseJI	GATNNNNATC	1 cut(s)	625
BseMI	GCAATG	2 cut(s)	664, 727
BseMII	CTCAG	5 cut(s)	262, 280, 355, 433, 814
BseNI	ACTGG	3 cut(s)	75, 713, 1003
BseRI	GAGGAG	2 cut(s)	840, 996
BshFI	GGCC	3 cut(s)	48, 453, 488
BshTI	ACCGGT	1 cut(s)	923
BsiSI	CCGG	3 cut(s)	312, 334, 924
BslFI	GGGAC	2 cut(s)	859, 1050
BsmAI	GTCTC	3 cut(s)	173, 269, 490
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	2 cut(s)	859, 1050
BsmI	GAATGC	1 cut(s)	990
BsnI	GGCC	3 cut(s)	48, 453, 488
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	367, 626, 931
Bsp1720I	GCTNAGC	1 cut(s)	289
BspANI	GGCC	3 cut(s)	48, 453, 488
BspCNI	CTCAG	5 cut(s)	261, 281, 356, 434, 815
BspLI	GGNNCC	5 cut(s)	22, 72, 452, 487, 628
BspMAI	CTGCAG	1 cut(s)	272
BspPI	GGATC	2 cut(s)	621, 634
BspQI	GCTCTTC	1 cut(s)	545
BsrDI	GCAATG	2 cut(s)	664, 727
BsrFI	RCCGGY	1 cut(s)	923
BsrI	ACTGG	3 cut(s)	75, 713, 1003
BssAI	RCCGGY	1 cut(s)	923
BssECI	CCNNGG	3 cut(s)	334, 670, 1067
BssMI	GATC	3 cut(s)	367, 626, 931
BssT1I	CCWWGG	1 cut(s)	670
Bst2UI	CCWGG	3 cut(s)	557, 960, 1069
Bst4CI	ACNGT	2 cut(s)	611, 1098
Bst6I	CTCTTC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	807
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	6 cut(s)	248, 289, 364, 442, 823, 880
BstF5I	GGATG	2 cut(s)	761, 992
BstKTI	GATC	3 cut(s)	370, 629, 934
BstMAI	GTCTC	3 cut(s)	173, 269, 490
BstMBI	GATC	3 cut(s)	367, 626, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 807, 870
BstNI	CCWGG	3 cut(s)	557, 960, 1069
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	4 cut(s)	333, 555, 958, 1067
BstSFI	CTRYAG	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	367, 626
BstYI	RGATCY	2 cut(s)	367, 626
Bsu36I	CCTNAGG	1 cut(s)	880
BsuRI	GGCC	3 cut(s)	48, 453, 488
BtsCI	GGATG	2 cut(s)	761, 992
Cac8I	GCNNGC	1 cut(s)	799
CaiI	CAGNNNCTG	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	923
Cfr13I	GGNCC	4 cut(s)	20, 451, 486, 1094
Csp6I	GTAC	5 cut(s)	2, 348, 446, 592, 952
CspAI	ACCGGT	1 cut(s)	923
CviAII	CATG	2 cut(s)	105, 482
CviQI	GTAC	5 cut(s)	2, 348, 446, 592, 952
DdeI	CTNAG	6 cut(s)	248, 289, 364, 442, 823, 880
DpnI	GATC	3 cut(s)	369, 628, 933
DpnII	GATC	3 cut(s)	367, 626, 931
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	20, 1094
Eco81I	CCTNAGG	1 cut(s)	880
EcoRII	CCWGG	3 cut(s)	555, 958, 1067
EcoT14I	CCWWGG	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	992
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	670
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	2 cut(s)	108, 485
FaqI	GGGAC	2 cut(s)	859, 1050
FatI	CATG	2 cut(s)	104, 481
FauNDI	CATATG	2 cut(s)	806, 817
Fnu4HI	GCNGC	1 cut(s)	1114
FokI	GGATG	2 cut(s)	748, 999
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	1114
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	1 cut(s)	1114
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	48, 453, 488
HapII	CCGG	3 cut(s)	312, 334, 924
Hin1II	CATG	2 cut(s)	108, 485
HinfI	GANTC	7 cut(s)	133, 246, 273, 339, 456, 498, 906
HpaII	CCGG	3 cut(s)	312, 334, 924
Hpy166II	GTNNAC	1 cut(s)	594
Hpy188I	TCNGA	8 cut(s)	251, 278, 443, 587, 638, 766, 931, 980
Hpy188III	TCNNGA	4 cut(s)	363, 426, 1032, 1079
Hpy8I	GTNNAC	1 cut(s)	594
Hpy99I	CGWCG	1 cut(s)	698
HpyAV	CCTTC	2 cut(s)	194, 522
HpyCH4III	ACNGT	2 cut(s)	611, 1098
HpyCH4IV	ACGT	2 cut(s)	383, 1105
HpyCH4V	TGCA	7 cut(s)	129, 270, 381, 664, 720, 810, 990
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 807, 870
HpyF3I	CTNAG	6 cut(s)	248, 289, 364, 442, 823, 880
HpySE526I	ACGT	2 cut(s)	383, 1105
Hsp92II	CATG	2 cut(s)	108, 485
Kzo9I	GATC	3 cut(s)	367, 626, 931
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	3 cut(s)	70, 638, 827
LweI	GCATC	2 cut(s)	977, 1011
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	2 cut(s)	383, 1105
MaeIII	GTNAC	2 cut(s)	614, 674
MalI	GATC	3 cut(s)	369, 628, 933
MboI	GATC	3 cut(s)	367, 626, 931
MboII	GAAGA	1 cut(s)	562
MflI	RGATCY	2 cut(s)	367, 626
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	4 cut(s)	29, 39, 712, 1045
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	3 cut(s)	240, 267, 492
Mox20I	TGGCCA	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	992
MroXI	GAANNNNTTC	1 cut(s)	532
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	5 cut(s)	328, 492, 703, 748, 1048
MslI	CAYNNNNRTG	2 cut(s)	738, 749
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	288, 1116
MspI	CCGG	3 cut(s)	312, 334, 924
MspR9I	CCNGG	4 cut(s)	335, 557, 960, 1069
Mva1269I	GAATGC	1 cut(s)	990
MvaI	CCWGG	3 cut(s)	557, 960, 1069
MwoI	GCNNNNNNNGC	3 cut(s)	105, 807, 870
NciI	CCSGG	1 cut(s)	335
NdeI	CATATG	2 cut(s)	806, 817
NdeII	GATC	3 cut(s)	367, 626, 931
NlaIII	CATG	2 cut(s)	108, 485
NlaIV	GGNNCC	5 cut(s)	22, 72, 452, 487, 628
NmuCI	GTSAC	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	992
NspI	RCATGY	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	990
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	4 cut(s)	133, 339, 456, 906
PinAI	ACCGGT	1 cut(s)	923
PkrI	GCNGC	1 cut(s)	1115
PleI	GAGTC	3 cut(s)	240, 267, 492
PpsI	GAGTC	3 cut(s)	240, 267, 492
Psp6I	CCWGG	3 cut(s)	555, 958, 1067
PspGI	CCWGG	3 cut(s)	555, 958, 1067
PspN4I	GGNNCC	5 cut(s)	22, 72, 452, 487, 628
PspPI	GGNCC	4 cut(s)	20, 451, 486, 1094
PstI	CTGCAG	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	276
PsuI	RGATCY	2 cut(s)	367, 626
PvuII	CAGCTG	2 cut(s)	288, 1116
RsaI	GTAC	5 cut(s)	3, 349, 447, 593, 953
RsaNI	GTAC	5 cut(s)	2, 348, 446, 592, 952
RseI	CAYNNNNRTG	2 cut(s)	738, 749
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	5 cut(s)	328, 492, 703, 748, 1048
SatI	GCNGC	1 cut(s)	1114
Sau3AI	GATC	3 cut(s)	367, 626, 931
Sau96I	GGNCC	4 cut(s)	20, 451, 486, 1094
SchI	GAGTC	3 cut(s)	240, 267, 492
ScrFI	CCNGG	4 cut(s)	335, 557, 960, 1069
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	2 cut(s)	977, 1011
SfcI	CTRYAG	1 cut(s)	268
SinI	GGWCC	2 cut(s)	20, 1094
SmiMI	CAYNNNNRTG	2 cut(s)	738, 749
Sse9I	AATT	4 cut(s)	29, 39, 712, 1045
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	4 cut(s)	333, 555, 958, 1067
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	2 cut(s)	611, 1098
TaiI	ACGT	2 cut(s)	386, 1108
TaqI	TCGA	3 cut(s)	576, 852, 1005
TasI	AATT	4 cut(s)	29, 39, 712, 1045
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	4 cut(s)	133, 339, 456, 906
Tru1I	TTAA	5 cut(s)	328, 492, 703, 748, 1048
Tru9I	TTAA	5 cut(s)	328, 492, 703, 748, 1048
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	1 cut(s)	1113
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	4 cut(s)	470, 487, 525, 722
VpaK11BI	GGWCC	2 cut(s)	20, 1094
XapI	RAATTY	2 cut(s)	29, 712
XceI	RCATGY	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.