Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001725.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

73745 .. 77080

Gene Structure 3336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgggaagatggagattgtggtggagcggaattcgcgaattttcaggtccaagaaaggttggggattatggtagagcggaattcaaggatgtaaggcacgctcccaaaggctatgtcaagaagttcagaatgccaacttcccagaatttagtcccaattcgggtcgatttcgaagttgaaggccagaggttcaaagacgccttcacttggaacccatttggttttagtcaacagggaagaggatcaaggtttccagatatcaaagaggatgagtctgaggatgatgacattgatggtgctaagcatgtaatgatttattattattattgcaggatatcggtcactggtcgcgtaaggccggagagtggggtgagtggtgatctacacgctactccacgaggtactggttttgtgagtgatgagtccatccaacgcgatgcctctcaacagatcccgctggtgaccgcctcttatgcctcccgttcgtactcagatgttgctagtgttgccaatggtttttgtgctgttgagaacaatgtaataccgaaggtgttcggtattccaagggtgggaggacatatcgccatccttgtctttcaagtagaaagtgccagggctgacgacttctactatttggtatggccctttccaagtgggtcggagggcggttggtggaggaatgaccttcttcatgtcttagtcctccagttggagcttttgggccttgactctagcactgtagaaatgcgatacccgctgtttgttttgcaagttatacagccctcaaccttagcgattggtcatgtgacttcgattggcaggactgcctctgtgccaaacatcatgcagaacggtgtttctccattgccggatgttggggttgtcctgataacccataggactccaggagttttcagcccacaagcccttagagttatcaagttttttcttgagcagcttcttgatgatcttgtttgtggcgtctacctaccagttggtttgggggtgtgccacagatgcgttgctcatcatggtgccaagcataacagtgaagctgatgacctcttcattactgaactgtacgtgctctgttatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

366

Amino Acids

40.92

Weight (kDa)

6.26

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1034
AccBSI	CCGCTC	2 cut(s)	27, 77
AccI	GTMKAC	1 cut(s)	984
AccII	CGCG	3 cut(s)	36, 351, 435
AciI	CCGC	6 cut(s)	27, 77, 455, 465, 666, 755
AclWI	GGATC	2 cut(s)	250, 445
AcsI	RAATTY	4 cut(s)	30, 38, 80, 145
AcyI	GRCGYC	2 cut(s)	198, 981
AfaI	GTAC	3 cut(s)	403, 488, 1082
AfiI	CCNNNNNNNGG	6 cut(s)	160, 207, 365, 569, 709, 875
AgsI	TTSAA	4 cut(s)	85, 179, 193, 599
AjnI	CCWGG	2 cut(s)	611, 904
AluBI	AGCT	3 cut(s)	715, 958, 1055
AluI	AGCT	3 cut(s)	715, 958, 1055
Alw21I	GWGCWC	1 cut(s)	1089
AlwI	GGATC	2 cut(s)	250, 445
AoxI	GGCC	4 cut(s)	181, 356, 641, 721
ApeKI	GCWGC	1 cut(s)	955
ApoI	RAATTY	4 cut(s)	30, 38, 80, 145
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
Asp700I	GAANNNNTTC	1 cut(s)	551
AspS9I	GGNCC	3 cut(s)	47, 642, 721
AsuHPI	GGTGA	3 cut(s)	382, 389, 472
AsuII	TTCGAA	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	1034
BauI	CACGAG	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	1089
BbvI	GCAGC	1 cut(s)	967
BccI	CCATC	4 cut(s)	3, 287, 434, 593
BciT130I	CCWGG	2 cut(s)	613, 906
BfaI	CTAG	2 cut(s)	501, 732
BfmI	CTRYAG	1 cut(s)	738
BisI	GCNGC	1 cut(s)	956
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	957
Bme1390I	CCNGG	2 cut(s)	613, 906
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	47, 642, 721
BmiI	GGNNCC	2 cut(s)	212, 1036
BmrFI	CCNGG	2 cut(s)	613, 906
BmsI	GCATC	2 cut(s)	427, 1007
BpmI	CTGGAG	2 cut(s)	689, 888
Bpu10I	CCTNAGC	1 cut(s)	790
Bpu1102I	GCTNAGC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	971
BsaAI	YACGTR	1 cut(s)	1084
BsaHI	GRCGYC	2 cut(s)	198, 981
BsaJI	CCNNGG	2 cut(s)	563, 612
Bsc4I	CCNNNNNNNGG	6 cut(s)	160, 207, 365, 569, 709, 875
Bse1I	ACTGG	4 cut(s)	349, 409, 706, 992
Bse3DI	GCAATG	1 cut(s)	863
BseBI	CCWGG	2 cut(s)	613, 906
BseDI	CCNNGG	2 cut(s)	563, 612
BseGI	GGATG	6 cut(s)	94, 274, 286, 426, 585, 877
BseLI	CCNNNNNNNGG	6 cut(s)	160, 207, 365, 569, 709, 875
BseMI	GCAATG	1 cut(s)	863
BseMII	CTCAG	2 cut(s)	267, 504
BseNI	ACTGG	4 cut(s)	349, 409, 706, 992
BseXI	GCAGC	1 cut(s)	967
Bsh1236I	CGCG	3 cut(s)	36, 351, 435
BshFI	GGCC	4 cut(s)	183, 358, 643, 723
BshNI	GGYRCC	1 cut(s)	1034
BsiHKAI	GWGCWC	1 cut(s)	1089
BsiSI	CCGG	2 cut(s)	359, 869
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	6 cut(s)	160, 207, 365, 569, 709, 875
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	4 cut(s)	183, 358, 643, 723
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	1089
Bsp143I	GATC	4 cut(s)	242, 379, 450, 967
Bsp1720I	GCTNAGC	1 cut(s)	300
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	6 cut(s)	27, 77, 455, 465, 666, 755
BspANI	GGCC	4 cut(s)	183, 358, 643, 723
BspCNI	CTCAG	2 cut(s)	268, 503
BspFNI	CGCG	3 cut(s)	36, 351, 435
BspLI	GGNNCC	2 cut(s)	212, 1036
BspPI	GGATC	2 cut(s)	250, 445
BspT104I	TTCGAA	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	1034
BsrBI	CCGCTC	2 cut(s)	27, 77
BsrDI	GCAATG	1 cut(s)	863
BsrI	ACTGG	4 cut(s)	349, 409, 706, 992
BssECI	CCNNGG	2 cut(s)	563, 612
BssMI	GATC	4 cut(s)	242, 379, 450, 967
BssNI	GRCGYC	2 cut(s)	198, 981
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	613, 906
Bst4CI	ACNGT	4 cut(s)	739, 854, 1049, 1080
Bst6I	CTCTTC	2 cut(s)	232, 1070
BstACI	GRCGYC	2 cut(s)	198, 981
BstBAI	YACGTR	1 cut(s)	1084
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	6 cut(s)	276, 300, 490, 697, 790, 929
BstEII	GGTNACC	1 cut(s)	460
BstF5I	GGATG	6 cut(s)	94, 274, 286, 426, 585, 877
BstFNI	CGCG	3 cut(s)	36, 351, 435
BstKTI	GATC	4 cut(s)	245, 382, 453, 970
BstMBI	GATC	4 cut(s)	242, 379, 450, 967
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 473, 506, 754, 1017
BstNI	CCWGG	2 cut(s)	613, 906
BstNSI	RCATGY	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	460
BstSCI	CCNGG	2 cut(s)	611, 904
BstSFI	CTRYAG	1 cut(s)	738
BstUI	CGCG	3 cut(s)	36, 351, 435
BstV1I	GCAGC	1 cut(s)	967
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	4 cut(s)	183, 358, 643, 723
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	6 cut(s)	94, 274, 286, 426, 585, 877
BtsIMutI	CAGTG	3 cut(s)	342, 735, 1054
BtuMI	TCGCGA	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	47, 642, 721
CseI	GACGC	2 cut(s)	206, 970
Csp6I	GTAC	3 cut(s)	402, 487, 1081
CviAII	CATG	5 cut(s)	305, 692, 803, 844, 1031
CviQI	GTAC	3 cut(s)	402, 487, 1081
DdeI	CTNAG	6 cut(s)	276, 300, 490, 697, 790, 929
DpnI	GATC	4 cut(s)	244, 381, 452, 969
DpnII	GATC	4 cut(s)	242, 379, 450, 967
Eam1104I	CTCTTC	2 cut(s)	232, 1070
EarI	CTCTTC	2 cut(s)	232, 1070
Eco130I	CCWWGG	1 cut(s)	563
Eco32I	GATATC	2 cut(s)	259, 336
Eco47I	GGWCC	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	460
EcoRI	GAATTC	2 cut(s)	30, 80
EcoRII	CCWGG	2 cut(s)	611, 904
EcoRV	GATATC	2 cut(s)	259, 336
EcoT14I	CCWWGG	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	5 cut(s)	308, 695, 806, 847, 1034
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	304, 691, 802, 843, 1030
FauI	CCCGC	2 cut(s)	462, 762
FblI	GTMKAC	1 cut(s)	984
Fnu4HI	GCNGC	1 cut(s)	956
FokI	GGATG	6 cut(s)	101, 281, 293, 413, 572, 884
Fsp4HI	GCNGC	1 cut(s)	956
FspBI	CTAG	2 cut(s)	501, 732
GluI	GCNGC	1 cut(s)	956
GsuI	CTGGAG	2 cut(s)	689, 888
HaeIII	GGCC	4 cut(s)	183, 358, 643, 723
HapII	CCGG	2 cut(s)	359, 869
HgaI	GACGC	2 cut(s)	206, 970
Hin1I	GRCGYC	2 cut(s)	198, 981
Hin1II	CATG	5 cut(s)	308, 695, 806, 847, 1034
HincII	GTYRAC	1 cut(s)	230
HindII	GTYRAC	1 cut(s)	230
HinfI	GANTC	4 cut(s)	272, 422, 728, 901
HpaII	CCGG	2 cut(s)	359, 869
HphI	GGTGA	3 cut(s)	382, 389, 472
Hpy166II	GTNNAC	2 cut(s)	230, 985
Hpy188I	TCNGA	4 cut(s)	128, 277, 493, 661
Hpy188III	TCNNGA	6 cut(s)	35, 118, 254, 886, 950, 962
Hpy8I	GTNNAC	2 cut(s)	230, 985
HpyAV	CCTTC	4 cut(s)	173, 211, 541, 695
HpyCH4III	ACNGT	4 cut(s)	739, 854, 1049, 1080
HpyCH4IV	ACGT	1 cut(s)	1083
HpyCH4V	TGCA	3 cut(s)	330, 769, 847
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 473, 506, 754, 1017
HpyF3I	CTNAG	6 cut(s)	276, 300, 490, 697, 790, 929
HpySE526I	ACGT	1 cut(s)	1083
Hsp92I	GRCGYC	2 cut(s)	198, 981
Hsp92II	CATG	5 cut(s)	308, 695, 806, 847, 1034
Kzo9I	GATC	4 cut(s)	242, 379, 450, 967
LmnI	GCTCC	3 cut(s)	24, 106, 712
Lsp1109I	GCAGC	1 cut(s)	967
LweI	GCATC	2 cut(s)	427, 1007
MaeI	CTAG	2 cut(s)	501, 732
MaeII	ACGT	1 cut(s)	1083
MaeIII	GTNAC	3 cut(s)	340, 460, 805
MalI	GATC	4 cut(s)	244, 381, 452, 969
MbiI	CCGCTC	2 cut(s)	27, 77
MboI	GATC	4 cut(s)	242, 379, 450, 967
MboII	GAAGA	4 cut(s)	18, 249, 680, 1057
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	1089
MluCI	AATT	5 cut(s)	30, 38, 80, 145, 156
MlyI	GAGTC	4 cut(s)	281, 431, 722, 895
MmeI	TCCRAC	3 cut(s)	454, 639, 690
MroXI	GAANNNNTTC	1 cut(s)	551
MslI	CAYNNNNRTG	2 cut(s)	1032, 1047
MspA1I	CMGCKG	2 cut(s)	457, 757
MspI	CCGG	2 cut(s)	359, 869
MspR9I	CCNGG	2 cut(s)	613, 906
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	613, 906
MvnI	CGCG	3 cut(s)	36, 351, 435
MwoI	GCNNNNNNNGC	5 cut(s)	33, 473, 506, 754, 1017
NdeII	GATC	4 cut(s)	242, 379, 450, 967
NlaIII	CATG	5 cut(s)	308, 695, 806, 847, 1034
NlaIV	GGNNCC	2 cut(s)	212, 1036
NmuCI	GTSAC	3 cut(s)	340, 460, 805
NruI	TCGCGA	1 cut(s)	36
NspI	RCATGY	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	171
PctI	GAATGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	904
PkrI	GCNGC	1 cut(s)	957
PleI	GAGTC	4 cut(s)	280, 430, 722, 895
PpsI	GAGTC	4 cut(s)	280, 430, 722, 895
Ppu21I	YACGTR	1 cut(s)	1084
Psp6I	CCWGG	2 cut(s)	611, 904
PspEI	GGTNACC	1 cut(s)	460
PspGI	CCWGG	2 cut(s)	611, 904
PspN4I	GGNNCC	2 cut(s)	212, 1036
PspPI	GGNCC	3 cut(s)	47, 642, 721
PsuI	RGATCY	1 cut(s)	450
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	3 cut(s)	403, 488, 1082
RsaNI	GTAC	3 cut(s)	402, 487, 1081
RseI	CAYNNNNRTG	2 cut(s)	1032, 1047
SatI	GCNGC	1 cut(s)	956
Sau3AI	GATC	4 cut(s)	242, 379, 450, 967
Sau96I	GGNCC	3 cut(s)	47, 642, 721
SchI	GAGTC	4 cut(s)	281, 431, 722, 895
ScrFI	CCNGG	2 cut(s)	613, 906
SduI	GDGCHC	1 cut(s)	1089
SfaNI	GCATC	2 cut(s)	427, 1007
SfcI	CTRYAG	1 cut(s)	738
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	1032, 1047
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
Sse9I	AATT	5 cut(s)	30, 38, 80, 145, 156
SsiI	CCGC	6 cut(s)	27, 77, 455, 465, 666, 755
SspMI	CTAG	2 cut(s)	501, 732
StyD4I	CCNGG	2 cut(s)	611, 904
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	4 cut(s)	739, 854, 1049, 1080
TaiI	ACGT	1 cut(s)	1086
TaqI	TCGA	3 cut(s)	165, 171, 812
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	5 cut(s)	30, 38, 80, 145, 156
TscAI	CASTG	3 cut(s)	349, 742, 1054
TseFI	GTSAC	3 cut(s)	340, 460, 805
TseI	GCWGC	1 cut(s)	955
Tsp45I	GTSAC	3 cut(s)	340, 460, 805
TspDTI	ATGAA	2 cut(s)	680, 1057
TspRI	CASTG	3 cut(s)	349, 742, 1054
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	4 cut(s)	30, 38, 80, 145
XceI	RCATGY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	984
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	2 cut(s)	501, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.