Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001738.1

Orthogroup ID

OG0031122

Physical Location & Seq

Genomic Coordinates Forward (+)

74607 .. 78713

Gene Structure 4107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgctggagcctattgacatcactagactggctggtgagtggcagactcaatttatgagtgttggaagatcaattaacaatgccaaaacaaatgggtgtccagatcatgttgcgtgggccgtgccaagattgggaaatctgaaaatgaactttgatggggcttgtgatgtgaagaaaggagcgtgtgggctgggagtggtgttcagggaccaccttgggaggttgaagggtgctcttgcagttccacaactggagaacgctcttcaccgcctcggttgccgtgactcactgagtccacaactcatcgcccgagtcatcgatcctttcctcctcaaccaccactctctcgctctcagcttcttcaactgggcttctcaacagccctccttctcccacacctccaccacctaccaatcagtcctcaagtcactttcttttttccgccaattttccgccattgatgctctgctcaagcaagtcagagcccagagaatcggcctcgatgcatcggtctatcgctccgtgattgcttcactcatcataggaaagaaaacccacaatgcctttttggtgttcggcgaggttgggattgaagatattgggcatgagatttgcaactcattcttggctgctgtggcttctgatgggtgtttggagaatgcccagaaggtgtttgaaaaaatgactctgagagctgtgcctgtaagcaccgctggatttggtgtgtttgtgtggcggctatgtggaaacgctgaattgagtaagatattgagtatgttcgacatgtgttggggaggtgggaagagacgagaagctggtggtctggagtcggatttccgatgtaattccagcgacggtggagagagagagtctgggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MNE1 PPR PPR_2 PPR_3

Protein Analysis

293

Amino Acids

32.02

Weight (kDa)

8.75

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031122)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001241.1_g000005 Rmu_sc0001738.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	268, 442, 453, 711, 736
AclWI	GGATC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	783
AgsI	TTSAA	4 cut(s)	226, 364, 593, 677
AluBI	AGCT	3 cut(s)	357, 695, 815
AluI	AGCT	3 cut(s)	357, 695, 815
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	799
AlwI	GGATC	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	2 cut(s)	117, 496
ApeKI	GCWGC	1 cut(s)	629
AspS9I	GGNCC	2 cut(s)	117, 208
AsuHPI	GGTGA	2 cut(s)	47, 257
AvaI	CYCGRG	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	2 cut(s)	149, 638
BceAI	ACGGC	2 cut(s)	104, 264
BcoDI	GTCTC	1 cut(s)	799
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	630, 737
BlsI	GCNGC	2 cut(s)	631, 738
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	117, 208
BmiI	GGNNCC	2 cut(s)	9, 209
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	3 cut(s)	451, 493, 515
BmuI	ACTGGG	1 cut(s)	376
BpmI	CTGGAG	3 cut(s)	26, 272, 845
BpuEI	CTTGAG	2 cut(s)	407, 455
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	214, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	3 cut(s)	33, 255, 371
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	214, 271
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	281, 367, 680
BseNI	ACTGG	3 cut(s)	33, 255, 371
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	616
BseYI	CCCAGC	1 cut(s)	190
BshFI	GGCC	2 cut(s)	119, 498
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	799
BsmBI	CGTCTC	1 cut(s)	799
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	119, 498
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	235, 487
Bsp143I	GATC	3 cut(s)	68, 103, 319
BspACI	CCGC	5 cut(s)	268, 442, 453, 711, 736
BspANI	GGCC	2 cut(s)	119, 498
BspCNI	CTCAG	3 cut(s)	282, 366, 681
BspDI	ATCGAT	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	9, 209
BspPI	GGATC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	33, 255, 371
BssECI	CCNNGG	2 cut(s)	214, 271
BssMI	GATC	3 cut(s)	68, 103, 319
BssT1I	CCWWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	857
Bst6I	CTCTTC	2 cut(s)	267, 797
BstDEI	CTNAG	3 cut(s)	290, 353, 689
BstKTI	GATC	3 cut(s)	71, 106, 322
BstMAI	GTCTC	1 cut(s)	799
BstMBI	GATC	3 cut(s)	68, 103, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 461, 635
BstNSI	RCATGY	1 cut(s)	787
BstV1I	GCAGC	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	119, 498
BsuTUI	ATCGAT	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	117, 208
ClaI	ATCGAT	1 cut(s)	318
CviAII	CATG	3 cut(s)	107, 605, 784
DdeI	CTNAG	3 cut(s)	290, 353, 689
DpnI	GATC	3 cut(s)	70, 105, 321
DpnII	GATC	3 cut(s)	68, 103, 319
Eam1104I	CTCTTC	2 cut(s)	267, 797
EarI	CTCTTC	2 cut(s)	267, 797
EciI	GGCGGA	2 cut(s)	431, 442
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	799
FaeI	CATG	3 cut(s)	110, 608, 787
FaiI	YATR	7 cut(s)	56, 108, 542, 606, 742, 776, 785
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	106, 604, 783
Fnu4HI	GCNGC	2 cut(s)	630, 737
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	2 cut(s)	630, 737
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	2 cut(s)	630, 737
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	3 cut(s)	26, 272, 845
HaeIII	GGCC	2 cut(s)	119, 498
Hin1II	CATG	3 cut(s)	110, 608, 787
HinfI	GANTC	8 cut(s)	46, 284, 292, 312, 492, 685, 827, 869
HphI	GGTGA	2 cut(s)	47, 257
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	6 cut(s)	141, 482, 643, 690, 832, 839
Hpy188III	TCNNGA	2 cut(s)	101, 824
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	857
HpyAV	CCTTC	3 cut(s)	220, 397, 661
HpyCH4III	ACNGT	1 cut(s)	857
HpyCH4V	TGCA	3 cut(s)	239, 506, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 461, 635
HpyF3I	CTNAG	3 cut(s)	290, 353, 689
Hsp92II	CATG	3 cut(s)	110, 608, 787
Kzo9I	GATC	3 cut(s)	68, 103, 319
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	7, 179, 524
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	3 cut(s)	451, 493, 515
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	281, 426
MalI	GATC	3 cut(s)	70, 105, 321
MboI	GATC	3 cut(s)	68, 103, 319
MboII	GAAGA	6 cut(s)	78, 184, 254, 352, 605, 814
MhlI	GDGCHC	2 cut(s)	235, 487
MluCI	AATT	5 cut(s)	50, 72, 446, 755, 844
MlyI	GAGTC	7 cut(s)	40, 278, 301, 321, 679, 836, 878
MmeI	TCCRAC	2 cut(s)	43, 810
Mph1103I	ATGCAT	1 cut(s)	508
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	664
MwoI	GCNNNNNNNGC	3 cut(s)	276, 461, 635
NdeII	GATC	3 cut(s)	68, 103, 319
NlaIII	CATG	3 cut(s)	110, 608, 787
NlaIV	GGNNCC	2 cut(s)	9, 209
NmuCI	GTSAC	2 cut(s)	281, 426
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	1 cut(s)	787
PciI	ACATGT	1 cut(s)	783
PciSI	GCTCTTC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	631, 738
PleI	GAGTC	7 cut(s)	40, 278, 300, 320, 679, 835, 877
PpsI	GAGTC	7 cut(s)	40, 278, 300, 320, 679, 835, 877
PscI	ACATGT	1 cut(s)	783
PspFI	CCCAGC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	9, 209
PspPI	GGNCC	2 cut(s)	117, 208
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	630, 737
Sau3AI	GATC	3 cut(s)	68, 103, 319
Sau96I	GGNCC	2 cut(s)	117, 208
SchI	GAGTC	7 cut(s)	40, 278, 301, 321, 679, 836, 878
SduI	GDGCHC	2 cut(s)	235, 487
SfaNI	GCATC	3 cut(s)	451, 493, 515
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	422, 470
SmoI	CTYRAG	2 cut(s)	422, 470
Sse9I	AATT	5 cut(s)	50, 72, 446, 755, 844
SsiI	CCGC	5 cut(s)	268, 442, 453, 711, 736
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	857
TaqI	TCGA	3 cut(s)	318, 501, 780
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	5 cut(s)	50, 72, 446, 755, 844
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	2 cut(s)	281, 426
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	2 cut(s)	281, 426
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	208
XceI	RCATGY	1 cut(s)	787
XspI	CTAG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.