Rmu_sc0001744.1_g000024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001744.1
N/A
Physical Location & Seq
Reverse (-)
99139 .. 101187
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 753 bp
atgagtaacctgaatagactggacttcgctccattgggaacaactggctttggaaatcacaagtgggttcgtgatgtccgccagcatctcaaggtcgatggaatcctgggcacaattctcgagcctagcctggacgtgctaactgttgagcaagctcaagttttggaagcaaatagagcaaccttagaggcaaataaggtgaaagccatcatcctaatgactcatcatatgaatgatttgctccagtacgagtatatgaatgaagaagaccctagtaggctgtgggtctcactcgaagaaagatttggcaacgtctgtgactccctgcttcctgaactagaagtgagatggcatagcctctgcttctgtgatttcaagtcagttgctgactacaacttggaagcacttcacattaaatccttaatggacttctgtggaaaagatatcacatatgcgatgttgattgagaggactttctaccttctccgtctctgcattaatggtcatcctggtcatgatatgatgatccgtctactaaagacttcacacggacacccattatttctagcgaagcaaagcacgaatcaaaggttgattcctggactaagtatgacagccgccgctgtccaccaccagcctggggctggcacagtccctatccatgatgccatggaaagcctccatcatggtgatgacgtcccgggtgatgctgtaatcaccaactttgcttccaatagcgtttcagacgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

250

Amino Acids

28.02

Weight (kDa)

5.69

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 699
AccI GTMKAC 1 cut(s) 532
AciI CCGC 3 cut(s) 79, 618, 621
AclWI GGATC 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 696
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 640, 644
AgsI TTSAA 1 cut(s) 376
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 5 cut(s) 105, 129, 508, 598, 637
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 292, 494
AlwI GGATC 1 cut(s) 520
AlwNI CAGNNNCTG 1 cut(s) 386
Ama87I CYCGRG 2 cut(s) 119, 700
AseI ATTAAT 1 cut(s) 498
Asp700I GAANNNNTTC 1 cut(s) 405
AsuC2I CCSGG 2 cut(s) 701, 702
AsuHPI GGTGA 4 cut(s) 211, 701, 709, 716
AvaI CYCGRG 2 cut(s) 119, 700
BaeGI GKGCMC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 273
BccI CCATC 4 cut(s) 92, 215, 342, 690
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 5 cut(s) 107, 131, 510, 600, 639
BcnI CCSGG 2 cut(s) 701, 702
BcoDI GTCTC 2 cut(s) 292, 494
BfaI CTAG 4 cut(s) 126, 273, 338, 566
BisI GCNGC 2 cut(s) 618, 621
BlsI GCNGC 2 cut(s) 619, 622
Bme1390I CCNGG 7 cut(s) 107, 131, 510, 600, 639, 701, 702
BmeT110I CYCGRG 2 cut(s) 119, 700
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 7 cut(s) 107, 131, 510, 600, 639, 701, 702
BmsI GCATC 3 cut(s) 94, 655, 697
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 74, 141
BpuMI CCSGG 2 cut(s) 701, 702
BsaHI GRCGYC 1 cut(s) 696
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 4 cut(s) 106, 638, 669, 700
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 644
Bse1I ACTGG 3 cut(s) 24, 49, 244
BseBI CCWGG 5 cut(s) 107, 131, 510, 600, 639
BseDI CCNNGG 4 cut(s) 106, 638, 669, 700
BseGI GGATG 2 cut(s) 210, 505
BseLI CCNNNNNNNGG 2 cut(s) 640, 644
BseNI ACTGG 3 cut(s) 24, 49, 244
BseSI GKGCMC 1 cut(s) 113
BsiHKCI CYCGRG 2 cut(s) 119, 700
BsiSI CCGG 1 cut(s) 701
BslFI GGGAC 2 cut(s) 638, 683
BslI CCNNNNNNNGG 2 cut(s) 640, 644
BsmAI GTCTC 2 cut(s) 292, 494
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 2 cut(s) 638, 683
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 2 cut(s) 119, 700
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 525
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 3 cut(s) 79, 618, 621
BspHI TCATGA 1 cut(s) 514
BspPI GGATC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 292
BsrI ACTGG 3 cut(s) 24, 49, 244
BssECI CCNNGG 4 cut(s) 106, 638, 669, 700
BssMI GATC 1 cut(s) 525
BssNI GRCGYC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 5 cut(s) 107, 131, 510, 600, 639
Bst4CI ACNGT 2 cut(s) 145, 652
BstACI GRCGYC 1 cut(s) 696
BstC8I GCNNGC 3 cut(s) 83, 153, 646
BstDEI CTNAG 3 cut(s) 184, 605, 750
BstDSI CCRYGG 1 cut(s) 669
BstF5I GGATG 2 cut(s) 210, 505
BstKTI GATC 1 cut(s) 528
BstMAI GTCTC 2 cut(s) 292, 494
BstMBI GATC 1 cut(s) 525
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 5 cut(s) 107, 131, 510, 600, 639
BstSCI CCNGG 7 cut(s) 105, 129, 508, 598, 637, 699, 700
BstSLI GKGCMC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 638
BtgI CCRYGG 1 cut(s) 669
BtgZI GCGATG 1 cut(s) 470
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 210, 505
Cac8I GCNNGC 3 cut(s) 83, 153, 646
CaiI CAGNNNCTG 1 cut(s) 386
CciI TCATGA 1 cut(s) 514
Cfr9I CCCGGG 1 cut(s) 700
Csp6I GTAC 1 cut(s) 247
CviAII CATG 4 cut(s) 515, 662, 670, 686
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 3 cut(s) 184, 605, 750
DpnI GATC 1 cut(s) 527
DpnII GATC 1 cut(s) 525
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 445
Eco88I CYCGRG 2 cut(s) 119, 700
EcoRII CCWGG 5 cut(s) 105, 129, 508, 598, 637
EcoRV GATATC 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 4 cut(s) 518, 665, 673, 689
FaqI GGGAC 2 cut(s) 638, 683
FatI CATG 4 cut(s) 514, 661, 669, 685
FauNDI CATATG 2 cut(s) 228, 451
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 618, 621
FokI GGATG 2 cut(s) 197, 492
Fsp4HI GCNGC 2 cut(s) 618, 621
FspBI CTAG 4 cut(s) 126, 273, 338, 566
GluI GCNGC 2 cut(s) 618, 621
GsuI CTGGAG 1 cut(s) 227
HapII CCGG 1 cut(s) 701
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 4 cut(s) 518, 665, 673, 689
HinfI GANTC 5 cut(s) 102, 220, 320, 583, 595
HpaII CCGG 1 cut(s) 701
HphI GGTGA 4 cut(s) 211, 701, 709, 716
Hpy166II GTNNAC 2 cut(s) 533, 628
Hpy188I TCNGA 1 cut(s) 745
Hpy188III TCNNGA 4 cut(s) 71, 119, 332, 515
Hpy8I GTNNAC 2 cut(s) 533, 628
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 2 cut(s) 145, 652
HpyCH4IV ACGT 3 cut(s) 135, 312, 696
HpyCH4V TGCA 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 3 cut(s) 184, 605, 750
HpySE526I ACGT 3 cut(s) 135, 312, 696
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 4 cut(s) 518, 665, 673, 689
Kzo9I GATC 1 cut(s) 525
LmnI GCTCC 2 cut(s) 34, 246
LweI GCATC 3 cut(s) 94, 655, 697
MaeI CTAG 4 cut(s) 126, 273, 338, 566
MaeII ACGT 3 cut(s) 135, 312, 696
MaeIII GTNAC 2 cut(s) 5, 317
MalI GATC 1 cut(s) 527
MboI GATC 1 cut(s) 525
MboII GAAGA 3 cut(s) 275, 278, 308
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 1 cut(s) 114
MlyI GAGTC 2 cut(s) 214, 314
MnlI CCTC 4 cut(s) 181, 368, 462, 689
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 3 cut(s) 414, 422, 498
MslI CAYNNNNRTG 4 cut(s) 215, 231, 687, 690
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 1 cut(s) 701
MspR9I CCNGG 7 cut(s) 107, 131, 510, 600, 639, 701, 702
MvaI CCWGG 5 cut(s) 107, 131, 510, 600, 639
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 2 cut(s) 701, 702
NcoI CCATGG 1 cut(s) 669
NdeI CATATG 2 cut(s) 228, 451
NdeII GATC 1 cut(s) 525
NlaIII CATG 4 cut(s) 518, 665, 673, 689
NmuCI GTSAC 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 119
PagI TCATGA 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 3 cut(s) 102, 583, 595
PfoI TCCNGGA 1 cut(s) 598
PkrI GCNGC 2 cut(s) 619, 622
PleI GAGTC 2 cut(s) 214, 314
PpsI GAGTC 2 cut(s) 214, 314
PshBI ATTAAT 1 cut(s) 498
Psp6I CCWGG 5 cut(s) 105, 129, 508, 598, 637
PspGI CCWGG 5 cut(s) 105, 129, 508, 598, 637
PstNI CAGNNNCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 4 cut(s) 215, 231, 687, 690
SaqAI TTAA 3 cut(s) 414, 422, 498
SatI GCNGC 2 cut(s) 618, 621
Sau3AI GATC 1 cut(s) 525
SchI GAGTC 2 cut(s) 214, 314
ScrFI CCNGG 7 cut(s) 107, 131, 510, 600, 639, 701, 702
SduI GDGCHC 1 cut(s) 113
SfaNI GCATC 3 cut(s) 94, 655, 697
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmaI CCCGGG 1 cut(s) 702
SmiMI CAYNNNNRTG 4 cut(s) 215, 231, 687, 690
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 114
SsiI CCGC 3 cut(s) 79, 618, 621
SspMI CTAG 4 cut(s) 126, 273, 338, 566
StyD4I CCNGG 7 cut(s) 105, 129, 508, 598, 637, 699, 700
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 2 cut(s) 145, 652
TaiI ACGT 3 cut(s) 138, 315, 699
TaqI TCGA 3 cut(s) 96, 120, 294
TasI AATT 1 cut(s) 114
TauI GCSGC 2 cut(s) 620, 623
TfiI GAWTC 3 cut(s) 102, 583, 595
Tru1I TTAA 3 cut(s) 414, 422, 498
Tru9I TTAA 3 cut(s) 414, 422, 498
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 245, 272, 276
TspGWI ACGGA 3 cut(s) 476, 518, 564
TspMI CCCGGG 1 cut(s) 700
VspI ATTAAT 1 cut(s) 498
XcmI CCANNNNNNNNNTGG 2 cut(s) 635, 641
XhoI CTCGAG 1 cut(s) 119
XmaI CCCGGG 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 4 cut(s) 126, 273, 338, 566
ZraI GACGTC 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.