Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001746.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

34429 .. 37156

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgcactcgccgaagcctggaacgagttgcgtggacgttaacctagctccggagattcgaattttacgagaatgttcttctccgacgattagtcaaatcggaagcacgtggatttggggggacggattactctccgttcccggagccataagtacagacttggaaactgtagtgccttattcccaaaagtctatgatccaattactcggcaagattccagacaagttttgtagccagcacactattgaagaaatggctctgttggcttacaattgcgctctcaagctctcctcaccagagcaagataagaatgctgaagcttcaaatctatttggtcaatgtcatttgagcaagataaaattcgctctcttctttagtctgggggaagatttggactttgcttatgatagcatttctgccttttcttccaaccgagacaaccaggaggcggctttagaagagcatggttttcctgttccaaatgcagtggattgtaacaggcattgtgtgattatgtcactagtgaagcaattggaaaatcctgagatagttttttatactatcattgggctcgttgttcgtctgacagaacatggtttgattcactgtgacttcaatgaatttaacattatggtgaagcaattggaaaatcctgagatagttttcaatactatcattgggctcgttgttcgtctgacagaacatggtttgattcactgtgacttcaatgaatttaacattatgattgatgatgacgagaagatcaccatgattgattttccccaaatggtctctgtatcacatcgtaatgcacaaatgtactttgaccgtgatgtggaatgtgtctttaagtttttcagcaagaggtcaattgatgatgacgagaagatcaccatgattgattttccccaaatggtctctgtatcacatcgtaatgcacaaatgtactttgaccgtgatgtggaatgtgtctttaagtttttcagcaagaggtcagtaatctttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

336

Amino Acids

38.25

Weight (kDa)

4.91

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	151 - 214	7.5e-12	RIO domain
RIO1	PF01163	216 - 292	2.1e-23	RIO domain
RIO1	PF01163	293 - 333	2.6e-11	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	4 cut(s)	60, 359, 620, 731
AcuI	CTGAAG	1 cut(s)	336
AcvI	CACGTG	1 cut(s)	108
AfaI	GTAC	3 cut(s)	154, 821, 947
AfiI	CCNNNNNNNGG	5 cut(s)	17, 49, 448, 835, 961
AgsI	TTSAA	5 cut(s)	248, 324, 616, 667, 727
AhdI	GACNNNNNGTC	1 cut(s)	90
AhlI	ACTAGT	1 cut(s)	520
AjnI	CCWGG	2 cut(s)	16, 441
AluBI	AGCT	3 cut(s)	47, 286, 320
AluI	AGCT	3 cut(s)	47, 286, 320
Alw26I	GTCTC	3 cut(s)	429, 796, 922
AlwI	GGATC	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	49
ApoI	RAATTY	4 cut(s)	60, 359, 620, 731
AspLEI	GCGC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	4 cut(s)	285, 646, 757, 883
AsuII	TTCGAA	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	573, 684
BbrPI	CACGTG	1 cut(s)	108
BciT130I	CCWGG	2 cut(s)	18, 443
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	3 cut(s)	429, 796, 922
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	2 cut(s)	44, 521
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	18, 141, 443
BmeRI	GACNNNNNGTC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	3 cut(s)	18, 141, 443
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	108
BsaI	GGTCTC	2 cut(s)	796, 922
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 49, 448, 835, 961
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	18, 443
BseLI	CCNNNNNNNGG	5 cut(s)	17, 49, 448, 835, 961
BseMII	CTCAG	2 cut(s)	534, 645
BseRI	GAGGAG	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	50, 141
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	5 cut(s)	17, 49, 448, 835, 961
BsmAI	GTCTC	3 cut(s)	429, 796, 922
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	316
Bso31I	GGTCTC	2 cut(s)	796, 922
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	573, 684
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	195, 762, 888
BspACI	CCGC	1 cut(s)	449
BspCNI	CTCAG	2 cut(s)	535, 646
BspEI	TCCGGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	453
BspT104I	TTCGAA	1 cut(s)	58
BspTNI	GGTCTC	2 cut(s)	796, 922
BssMI	GATC	3 cut(s)	195, 762, 888
Bst2UI	CCWGG	2 cut(s)	18, 443
Bst4CI	ACNGT	5 cut(s)	169, 608, 719, 830, 956
Bst6I	CTCTTC	2 cut(s)	374, 453
BstBAI	YACGTR	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	543, 654
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	3 cut(s)	198, 765, 891
BstMAI	GTCTC	3 cut(s)	429, 796, 922
BstMBI	GATC	3 cut(s)	195, 762, 888
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	18, 443
BstSCI	CCNGG	3 cut(s)	16, 139, 441
BstSFI	CTRYAG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	3 cut(s)	492, 604, 715
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	153, 820, 946
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	5 cut(s)	464, 593, 704, 769, 895
CviQI	GTAC	3 cut(s)	153, 820, 946
DdeI	CTNAG	2 cut(s)	543, 654
DpnI	GATC	3 cut(s)	197, 764, 890
DpnII	GATC	3 cut(s)	195, 762, 888
DriI	GACNNNNNGTC	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	374, 453
Eam1105I	GACNNNNNGTC	1 cut(s)	90
EarI	CTCTTC	2 cut(s)	374, 453
Eco24I	GRGCYC	2 cut(s)	573, 684
Eco31I	GGTCTC	2 cut(s)	796, 922
Eco57I	CTGAAG	1 cut(s)	336
Eco72I	CACGTG	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	16, 441
EcoT38I	GRGCYC	2 cut(s)	573, 684
FaeI	CATG	5 cut(s)	467, 596, 707, 772, 898
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	5 cut(s)	463, 592, 703, 768, 894
Fnu4HI	GCNGC	1 cut(s)	450
FriOI	GRGCYC	2 cut(s)	573, 684
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	2 cut(s)	44, 521
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	450
HapII	CCGG	2 cut(s)	50, 141
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	467, 596, 707, 772, 898
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	4 cut(s)	55, 214, 601, 712
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	2 cut(s)	50, 141
HphI	GGTGA	4 cut(s)	285, 646, 757, 883
Hpy166II	GTNNAC	2 cut(s)	34, 40
Hpy188I	TCNGA	4 cut(s)	84, 101, 585, 696
Hpy188III	TCNNGA	4 cut(s)	50, 218, 542, 653
Hpy8I	GTNNAC	2 cut(s)	34, 40
Hpy99I	CGWCG	1 cut(s)	88
HpyCH4III	ACNGT	5 cut(s)	169, 608, 719, 830, 956
HpyCH4IV	ACGT	2 cut(s)	36, 107
HpyCH4V	TGCA	4 cut(s)	4, 485, 812, 938
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	543, 654
HpySE526I	ACGT	2 cut(s)	36, 107
Hsp92II	CATG	5 cut(s)	467, 596, 707, 772, 898
HspAI	GCGC	1 cut(s)	276
Kpn2I	TCCGGA	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	195, 762, 888
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	52, 143
MaeI	CTAG	2 cut(s)	44, 521
MaeII	ACGT	2 cut(s)	36, 107
MaeIII	GTNAC	4 cut(s)	494, 516, 608, 719
MalI	GATC	3 cut(s)	197, 764, 890
MboI	GATC	3 cut(s)	195, 762, 888
MboII	GAAGA	8 cut(s)	69, 260, 361, 398, 417, 470, 772, 898
MfeI	CAATTG	4 cut(s)	271, 530, 641, 870
MhlI	GDGCHC	2 cut(s)	573, 684
MluCI	AATT	9 cut(s)	60, 200, 271, 359, 530, 620, 641, 731, 870
MmeI	TCCRAC	2 cut(s)	107, 453
MnlI	CCTC	4 cut(s)	301, 439, 858, 984
MroI	TCCGGA	1 cut(s)	49
MseI	TTAA	5 cut(s)	39, 624, 735, 849, 975
MslI	CAYNNNNRTG	3 cut(s)	632, 807, 933
MspI	CCGG	2 cut(s)	50, 141
MspR9I	CCNGG	3 cut(s)	18, 141, 443
MunI	CAATTG	4 cut(s)	271, 530, 641, 870
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	2 cut(s)	18, 443
MwoI	GCNNNNNNNGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	195, 762, 888
NlaIII	CATG	5 cut(s)	467, 596, 707, 772, 898
NlaIV	GGNNCC	1 cut(s)	145
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	3 cut(s)	516, 608, 719
NspV	TTCGAA	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	4 cut(s)	55, 214, 601, 712
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	451
PmaCI	CACGTG	1 cut(s)	108
PmlI	CACGTG	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	16, 441
PspCI	CACGTG	1 cut(s)	108
PspGI	CCWGG	2 cut(s)	16, 441
PspN4I	GGNNCC	1 cut(s)	145
RsaI	GTAC	3 cut(s)	154, 821, 947
RsaNI	GTAC	3 cut(s)	153, 820, 946
RseI	CAYNNNNRTG	3 cut(s)	632, 807, 933
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	5 cut(s)	39, 624, 735, 849, 975
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	3 cut(s)	195, 762, 888
ScrFI	CCNGG	3 cut(s)	18, 141, 443
SduI	GDGCHC	2 cut(s)	573, 684
SetI	ASST	8 cut(s)	39, 45, 49, 110, 288, 322, 869, 995
SfcI	CTRYAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	58
SmiMI	CAYNNNNRTG	3 cut(s)	632, 807, 933
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	9 cut(s)	60, 200, 271, 359, 530, 620, 641, 731, 870
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	2 cut(s)	44, 521
StyD4I	CCNGG	3 cut(s)	16, 139, 441
TaaI	ACNGT	5 cut(s)	169, 608, 719, 830, 956
TaiI	ACGT	2 cut(s)	39, 110
TaqI	TCGA	1 cut(s)	58
TasI	AATT	9 cut(s)	60, 200, 271, 359, 530, 620, 641, 731, 870
TatI	WGTACW	3 cut(s)	152, 819, 945
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	4 cut(s)	55, 214, 601, 712
Tru1I	TTAA	5 cut(s)	39, 624, 735, 849, 975
Tru9I	TTAA	5 cut(s)	39, 624, 735, 849, 975
TscAI	CASTG	3 cut(s)	492, 611, 722
TseFI	GTSAC	3 cut(s)	516, 608, 719
Tsp45I	GTSAC	3 cut(s)	516, 608, 719
TspDTI	ATGAA	2 cut(s)	633, 744
TspGWI	ACGGA	2 cut(s)	124, 138
TspRI	CASTG	3 cut(s)	492, 611, 722
XapI	RAATTY	4 cut(s)	60, 359, 620, 731
XspI	CTAG	2 cut(s)	44, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.