Rmu_sc0001748.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001748.1
N/A
Physical Location & Seq
Reverse (-)
55970 .. 56395
426 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
atgtcgaatgaaccaagactcgactttcccatgcttgactcaacaggctcggattaccatagcttggtaaccgatgttgagaaccacctcacttcaaagggggtattacccataatccaggcacctaaccaggatctcatgttcgtacaaacacctacaaagcatgctcaagcagttatcttgatgcgacgtcatatggacaaatcactcagattggagtacatgtcgatcaaagatgttcaatggaacaatctgcgcttcgccgacttcaagtccgttgctgagtataattcagaagctcttcgtctacgatccatgttgagattttgtggacaacaagcaagagctaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

117

Amino Acids

13.53

Weight (kDa)

7.94

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 64
AccI GTMKAC 1 cut(s) 307
AclWI GGATC 2 cut(s) 141, 306
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 2 cut(s) 147, 221
AfiI CCNNNNNNNGG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 3 cut(s) 96, 242, 271
AhdI GACNNNNNGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 117, 129
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 3 cut(s) 63, 299, 347
AluI AGCT 3 cut(s) 63, 299, 347
AlwI GGATC 2 cut(s) 141, 306
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 121
BciT130I CCWGG 2 cut(s) 119, 131
Bme1390I CCNGG 2 cut(s) 119, 131
BmeRI GACNNNNNGTC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 119, 131
BmsI GCATC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseBI CCWGG 2 cut(s) 119, 131
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 223, 273
BshNI GGYRCC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp143I GATC 3 cut(s) 133, 228, 311
BspCNI CTCAG 2 cut(s) 222, 274
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 2 cut(s) 141, 306
BspQI GCTCTTC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 121
BssMI GATC 3 cut(s) 133, 228, 311
BssNI GRCGYC 1 cut(s) 190
Bst2UI CCWGG 2 cut(s) 119, 131
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 209, 282
BstEII GGTNACC 1 cut(s) 67
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 3 cut(s) 136, 231, 314
BstMBI GATC 3 cut(s) 133, 228, 311
BstNI CCWGG 2 cut(s) 119, 131
BstNSI RCATGY 2 cut(s) 167, 226
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 258
Csp6I GTAC 2 cut(s) 146, 220
CviAII CATG 5 cut(s) 31, 139, 164, 223, 316
CviJI RGCY 4 cut(s) 48, 63, 299, 347
CviKI_1 RGCY 4 cut(s) 48, 63, 299, 347
CviQI GTAC 2 cut(s) 146, 220
DdeI CTNAG 2 cut(s) 209, 282
DpnI GATC 3 cut(s) 135, 230, 313
DpnII GATC 3 cut(s) 133, 228, 311
DriI GACNNNNNGTC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 306
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 306
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 117, 129
FaeI CATG 5 cut(s) 34, 142, 167, 226, 319
FatI CATG 5 cut(s) 30, 138, 163, 222, 315
FauNDI CATATG 1 cut(s) 195
FblI GTMKAC 1 cut(s) 307
GlaI GCGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 5 cut(s) 34, 142, 167, 226, 319
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 2 cut(s) 18, 38
Hpy166II GTNNAC 2 cut(s) 308, 332
Hpy188I TCNGA 3 cut(s) 52, 212, 295
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 2 cut(s) 308, 332
Hpy99I CGWCG 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 209, 282
HpySE526I ACGT 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 5 cut(s) 34, 142, 167, 226, 319
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 3 cut(s) 133, 228, 311
LguI GCTCTTC 1 cut(s) 306
LpnPI CCDG 5 cut(s) 30, 104, 116, 131, 143
LweI GCATC 1 cut(s) 174
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 135, 230, 313
MboI GATC 3 cut(s) 133, 228, 311
MboII GAAGA 1 cut(s) 293
MflI RGATCY 1 cut(s) 133
MluCI AATT 2 cut(s) 289, 349
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 119, 131
MvaI CCWGG 2 cut(s) 119, 131
NdeI CATATG 1 cut(s) 195
NdeII GATC 3 cut(s) 133, 228, 311
NlaIII CATG 5 cut(s) 34, 142, 167, 226, 319
NlaIV GGNNCC 1 cut(s) 123
NspI RCATGY 2 cut(s) 167, 226
PaeI GCATGC 1 cut(s) 167
PciI ACATGT 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 300
PflMI CCANNNNNTGG 1 cut(s) 64
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
PscI ACATGT 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 117, 129
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 117, 129
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 2 cut(s) 147, 221
RsaNI GTAC 2 cut(s) 146, 220
SapI GCTCTTC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 133, 228, 311
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SetI ASST 7 cut(s) 65, 90, 127, 157, 193, 301, 349
SfaNI GCATC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 2 cut(s) 289, 349
StyD4I CCNGG 2 cut(s) 117, 129
TaiI ACGT 1 cut(s) 193
TaqI TCGA 3 cut(s) 5, 21, 227
TasI AATT 2 cut(s) 289, 349
TatI WGTACW 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 64
XceI RCATGY 2 cut(s) 167, 226
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 300
ZraI GACGTC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.