Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001750.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

77766 .. 88573

Gene Structure 10808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgagagaacattacagcgagaaagccttcgatgcctcgtcgatccaaaccaccgtcgtcgtcgtcgtcccagattgctacaataaatccgccactccaccctacgccaacctcgaatcaacaaagcctcgaggcagacggaagtggttccttgtgcttctagattgggttggacaaaatgtacagaaggcgatggatagcggttggagtcttggcgctgctggtagggtttatgttcatgagggggctgatctccgccgtgctgacatccgtgccaaacaacgtgcaatgcaagatgccttaatggctttggagtttgtcaaagacattcttgacatgatggtgagcaaaatgtacaattttcctctgcagagagtagatggcattcaatcagaaaatgataaactggggtgtataatgctcgaaaagaatggcataactcttaatttccctccaggggtagtatctactgatcaaattactgcaattcaggaagcttactggagtatggcatctgccctctctgaagctgatggaattgactatactgatcctgaagagcttgagttgttaattgcaactcttatagatcttgatgccatggatggtaaaagtagtgtatccttgttggcagagtgttctagttcccctgatgtcaatactaggcgagcattagctaatgctttggctgcagctccatctatgtggacgttgggtaatgcaggaatgggagccttgcagcttcatatggacaatacttggggtggcgacggcaatgacgccgtcacaattatagagggaaaatcaatttcccggttacttgcgacggcgttttcagtcgctacacgccgtcgccaaataagctaccaaatcattgctacgctcgttgccgtggctaaatacggttgcgatggcattttgccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

33.59

Weight (kDa)

5.01

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	129
AciI	CCGC	3 cut(s)	90, 201, 256
AclWI	GGATC	2 cut(s)	37, 545
AcuI	CTGAAG	2 cut(s)	546, 576
AcyI	GRCGYC	1 cut(s)	780
AfaI	GTAC	2 cut(s)	183, 356
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	7 cut(s)	497, 530, 562, 677, 695, 742, 864
AluI	AGCT	7 cut(s)	497, 530, 562, 677, 695, 742, 864
AlwI	GGATC	2 cut(s)	37, 545
Ama87I	CYCGRG	1 cut(s)	129
ApeKI	GCWGC	4 cut(s)	218, 689, 692, 739
Asp700I	GAANNNNTTC	2 cut(s)	26, 146
AspLEI	GCGC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	205, 676, 704, 751
BccI	CCATC	7 cut(s)	187, 334, 374, 527, 599, 706, 905
BceAI	ACGGC	7 cut(s)	243, 767, 787, 834, 843, 875, 907
BciT130I	CCWGG	1 cut(s)	456
BciVI	GTATCC	1 cut(s)	631
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	814
BfaI	CTAG	3 cut(s)	161, 642, 663
BfmI	CTRYAG	2 cut(s)	368, 690
BfoI	RGCGCY	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	4 cut(s)	219, 690, 693, 740
BlsI	GCNGC	4 cut(s)	220, 691, 694, 741
Bme1390I	CCNGG	2 cut(s)	456, 814
BmeT110I	CYCGRG	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	149, 733
BmrFI	CCNGG	2 cut(s)	456, 814
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	4 cut(s)	22, 286, 521, 586
BmuI	ACTGGG	1 cut(s)	416
BpmI	CTGGAG	2 cut(s)	438, 523
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	814
BsaHI	GRCGYC	1 cut(s)	780
BsaJI	CCNNGG	3 cut(s)	455, 600, 891
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	411, 506
Bse3DI	GCAATG	3 cut(s)	294, 781, 873
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	455, 600, 891
BseGI	GGATG	2 cut(s)	267, 610
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	3 cut(s)	294, 781, 873
BseNI	ACTGG	2 cut(s)	411, 506
BseXI	GCAGC	4 cut(s)	205, 676, 704, 751
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	814
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	384
BsoBI	CYCGRG	1 cut(s)	129
Bsp1407I	TGTACA	2 cut(s)	181, 354
Bsp143I	GATC	5 cut(s)	42, 250, 472, 550, 589
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	3 cut(s)	90, 201, 256
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	149, 733
BspMAI	CTGCAG	2 cut(s)	372, 694
BspPI	GGATC	2 cut(s)	37, 545
BspQI	GCTCTTC	1 cut(s)	552
BsrDI	GCAATG	3 cut(s)	294, 781, 873
BsrGI	TGTACA	2 cut(s)	181, 354
BsrI	ACTGG	2 cut(s)	411, 506
BssECI	CCNNGG	3 cut(s)	455, 600, 891
BssMI	GATC	5 cut(s)	42, 250, 472, 550, 589
BssNI	GRCGYC	1 cut(s)	780
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	55, 905
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	780
BstAUI	TGTACA	2 cut(s)	181, 354
BstC8I	GCNNGC	1 cut(s)	669
BstDSI	CCRYGG	2 cut(s)	600, 891
BstF5I	GGATG	2 cut(s)	267, 610
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	5 cut(s)	45, 253, 475, 553, 592
BstMBI	GATC	5 cut(s)	42, 250, 472, 550, 589
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 305, 689, 861
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	454, 812
BstSFI	CTRYAG	2 cut(s)	368, 690
BstV1I	GCAGC	4 cut(s)	205, 676, 704, 751
BstX2I	RGATCY	1 cut(s)	589
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	631
BtgI	CCRYGG	2 cut(s)	600, 891
BtgZI	GCGATG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	267, 610
Cac8I	GCNNGC	1 cut(s)	669
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	218
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	182, 355
CviAII	CATG	3 cut(s)	239, 337, 601
CviQI	GTAC	2 cut(s)	182, 355
DpnI	GATC	5 cut(s)	44, 252, 474, 552, 591
DpnII	GATC	5 cut(s)	42, 250, 472, 550, 589
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	2 cut(s)	79, 245
Eco130I	CCWWGG	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	546, 576
Eco88I	CYCGRG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	3 cut(s)	242, 340, 604
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	238, 336, 600
FauNDI	CATATG	1 cut(s)	747
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	219, 690, 693, 740
FokI	GGATG	2 cut(s)	254, 617
Fsp4HI	GCNGC	4 cut(s)	219, 690, 693, 740
FspBI	CTAG	3 cut(s)	161, 642, 663
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	4 cut(s)	219, 690, 693, 740
GsuI	CTGGAG	2 cut(s)	438, 523
HaeII	RGCGCY	1 cut(s)	219
HapII	CCGG	1 cut(s)	814
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	780
Hin1II	CATG	3 cut(s)	242, 340, 604
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	2 cut(s)	116, 208
HpaII	CCGG	1 cut(s)	814
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	2 cut(s)	394, 526
Hpy188III	TCNNGA	6 cut(s)	161, 239, 332, 491, 554, 593
Hpy8I	GTNNAC	1 cut(s)	708
Hpy99I	CGWCG	8 cut(s)	43, 59, 62, 65, 68, 773, 829, 855
HpyAV	CCTTC	2 cut(s)	37, 181
HpyCH4III	ACNGT	2 cut(s)	55, 905
HpyCH4IV	ACGT	2 cut(s)	283, 710
HpyCH4V	TGCA	8 cut(s)	287, 292, 370, 485, 578, 692, 722, 739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 305, 689, 861
HpySE526I	ACGT	2 cut(s)	283, 710
Hsp92I	GRCGYC	1 cut(s)	780
Hsp92II	CATG	3 cut(s)	242, 340, 604
HspAI	GCGC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	42, 250, 472, 550, 589
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	700, 731
Lsp1109I	GCAGC	4 cut(s)	205, 676, 704, 751
LweI	GCATC	4 cut(s)	22, 286, 521, 586
MaeI	CTAG	3 cut(s)	161, 642, 663
MaeII	ACGT	2 cut(s)	283, 710
MaeIII	GTNAC	2 cut(s)	784, 816
MalI	GATC	5 cut(s)	44, 252, 474, 552, 591
MboI	GATC	5 cut(s)	42, 250, 472, 550, 589
MboII	GAAGA	1 cut(s)	569
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	8 cut(s)	358, 445, 477, 486, 537, 573, 789, 807
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	151, 185
MnlI	CCTC	9 cut(s)	46, 122, 125, 138, 235, 375, 462, 530, 790
MroXI	GAANNNNTTC	2 cut(s)	26, 146
MseI	TTAA	3 cut(s)	302, 444, 572
MslI	CAYNNNNRTG	2 cut(s)	341, 703
MspI	CCGG	1 cut(s)	814
MspR9I	CCNGG	2 cut(s)	456, 814
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	32, 305, 689, 861
NciI	CCSGG	1 cut(s)	814
NcoI	CCATGG	1 cut(s)	600
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	5 cut(s)	42, 250, 472, 550, 589
NlaIII	CATG	3 cut(s)	242, 340, 604
NlaIV	GGNNCC	2 cut(s)	149, 733
NmuCI	GTSAC	1 cut(s)	784
PaeR7I	CTCGAG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 111
PctI	GAATGC	1 cut(s)	384
PdmI	GAANNNNTTC	2 cut(s)	26, 146
PfeI	GAWTC	1 cut(s)	116
PflFI	GACNNNGTC	1 cut(s)	782
PkrI	GCNGC	4 cut(s)	220, 691, 694, 741
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	149, 733
PspXI	VCTCGAGB	1 cut(s)	129
PstI	CTGCAG	2 cut(s)	372, 694
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	782
RsaI	GTAC	2 cut(s)	183, 356
RsaNI	GTAC	2 cut(s)	182, 355
RseI	CAYNNNNRTG	2 cut(s)	341, 703
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	302, 444, 572
SatI	GCNGC	4 cut(s)	219, 690, 693, 740
Sau3AI	GATC	5 cut(s)	42, 250, 472, 550, 589
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	456, 814
SfaNI	GCATC	4 cut(s)	22, 286, 521, 586
SfcI	CTRYAG	2 cut(s)	368, 690
Sfr274I	CTCGAG	1 cut(s)	129
SlaI	CTCGAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	341, 703
SmlI	CTYRAG	2 cut(s)	129, 563
SmoI	CTYRAG	2 cut(s)	129, 563
Sse9I	AATT	8 cut(s)	358, 445, 477, 486, 537, 573, 789, 807
SsiI	CCGC	3 cut(s)	90, 201, 256
SspMI	CTAG	3 cut(s)	161, 642, 663
StyD4I	CCNGG	2 cut(s)	454, 812
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	55, 905
TaiI	ACGT	2 cut(s)	286, 713
TaqI	TCGA	5 cut(s)	30, 41, 114, 130, 423
TasI	AATT	8 cut(s)	358, 445, 477, 486, 537, 573, 789, 807
TatI	WGTACW	2 cut(s)	181, 354
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	302, 444, 572
Tru9I	TTAA	3 cut(s)	302, 444, 572
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	4 cut(s)	218, 689, 692, 739
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	2 cut(s)	227, 734
TspGWI	ACGGA	2 cut(s)	154, 260
Tth111I	GACNNNGTC	1 cut(s)	782
XbaI	TCTAGA	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	26, 146
XspI	CTAG	3 cut(s)	161, 642, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.