Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001752.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

32494 .. 32925

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgcgccgccatgaaatcctaacagtaggaaaccatgcaccgacaccaaacatttttgaggacgctcgggatgacgagaagaaatatgtccaaaaagagcctgtcaacccagaaacatctttgagggttatcaacatctctgacgagcaccctgagctgacagtccgcatcagtactcagctggcttcggaagtagcggcagaacttacacaattcctacctgacaacgccgccgtctttgcatggtcctatgctgatatgccctacatctcccctgagatcatcacacacaagttgagcatcaaaccatccttctatcctgtaaagcagcggcggagggccttcgatgaggaaagatacctcgctatcagggaagaggtcgccaagctccagaacattgggttcatcctccaggtcaattatcctcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

143

Amino Acids

16.59

Weight (kDa)

5.82

Isoelectric Point (pI)

69.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	7, 166, 197, 231, 331, 334
AfaI	GTAC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	3 cut(s)	157, 181, 388
AluI	AGCT	3 cut(s)	157, 181, 388
Alw21I	GWGCWC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	246, 339
AvaI	CYCGRG	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	413
BisI	GCNGC	5 cut(s)	7, 198, 231, 329, 332
BlsI	GCNGC	5 cut(s)	8, 199, 232, 330, 333
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	66
BmgT120I	GGNCC	2 cut(s)	246, 339
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	177, 309
BpmI	CTGGAG	2 cut(s)	374, 395
Bpu10I	CCTNAGC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	3 cut(s)	76, 308, 405
BseMII	CTCAG	3 cut(s)	144, 191, 267
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	66
BsnI	GGCC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	6 cut(s)	7, 166, 197, 231, 331, 334
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	3 cut(s)	145, 190, 268
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	2 cut(s)	25, 163
Bst6I	CTCTTC	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	153, 177, 276
BstF5I	GGATG	3 cut(s)	76, 308, 405
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 239
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	3 cut(s)	76, 308, 405
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	246, 339
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	11, 35, 243
CviJI	RGCY	6 cut(s)	100, 157, 181, 185, 341, 388
CviKI_1	RGCY	6 cut(s)	100, 157, 181, 185, 341, 388
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	3 cut(s)	153, 177, 276
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	411
FaeI	CATG	3 cut(s)	14, 38, 246
FaiI	YATR	6 cut(s)	12, 36, 87, 244, 252, 260
FatI	CATG	3 cut(s)	10, 34, 242
Fnu4HI	GCNGC	5 cut(s)	7, 198, 231, 329, 332
FokI	GGATG	3 cut(s)	83, 295, 392
Fsp4HI	GCNGC	5 cut(s)	7, 198, 231, 329, 332
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	5 cut(s)	7, 198, 231, 329, 332
GsuI	CTGGAG	2 cut(s)	374, 395
HaeIII	GGCC	1 cut(s)	341
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	14, 38, 246
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	142, 190
Hpy188III	TCNNGA	2 cut(s)	68, 391
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	322, 352
HpyCH4III	ACNGT	2 cut(s)	25, 163
HpyCH4V	TGCA	2 cut(s)	38, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 239
HpyF3I	CTNAG	3 cut(s)	153, 177, 276
Hsp92II	CATG	3 cut(s)	14, 38, 246
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	393
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	2 cut(s)	177, 309
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	2 cut(s)	91, 386
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	212, 418
MnlI	CCTC	7 cut(s)	52, 117, 330, 343, 370, 371, 419
MspA1I	CMGCKG	2 cut(s)	181, 331
MspR9I	CCNGG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	154, 239
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	3 cut(s)	14, 38, 246
PkrI	GCNGC	5 cut(s)	8, 199, 232, 330, 333
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	246, 339
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SatI	GCNGC	5 cut(s)	7, 198, 231, 329, 332
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	2 cut(s)	246, 339
ScaI	AGTACT	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	159, 183, 223, 363, 381, 390, 417
SfaNI	GCATC	2 cut(s)	177, 309
SinI	GGWCC	1 cut(s)	246
Sse9I	AATT	2 cut(s)	212, 418
SsiI	CCGC	6 cut(s)	7, 166, 197, 231, 331, 334
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	25, 163
TaqI	TCGA	1 cut(s)	345
TasI	AATT	2 cut(s)	212, 418
TatI	WGTACW	1 cut(s)	173
TauI	GCSGC	4 cut(s)	9, 200, 233, 334
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	27, 394
VpaK11BI	GGWCC	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.