Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

88645 .. 89004

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggcctcctcctcgacctcgtacaaagagtacgagatcagaaaaagaaacccaaacccgaaagtggctgcccttttagtcatcgacatgcagaactacttcgccgccatggctaagcctatcctccaaaacctcctcaccaccatccgtctctgccgacgcgcttccatccccgtcatcttcacgcgccactcccagaagtccccctccgactatggcatgctggacgagtggtggaacggcgtcttcacactacgctgctctgattcccaattccgactctttatttcaattcccacactcctcgtatttcatattgattccttcaagtttgatgtttttctcaaaatgcccctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009117 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

119

Amino Acids

13.84

Weight (kDa)

9.64

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	23 - 81	5.2e-08	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	162, 187
AciI	CCGC	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	23, 32
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	291, 328
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	68, 258
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	2 cut(s)	164, 189
AsuHPI	GGTGA	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	55, 245
BccI	CCATC	2 cut(s)	152, 176
BceAI	ACGGC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	110
BisI	GCNGC	3 cut(s)	69, 105, 259
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	3 cut(s)	70, 106, 260
BpiI	GAAGAC	1 cut(s)	238
Bpu1102I	GCTNAGC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	144, 168
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	125, 293
BseXI	GCAGC	2 cut(s)	55, 245
Bsh1236I	CGCG	2 cut(s)	162, 187
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	155
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	36
Bsp1720I	GCTNAGC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	162, 187
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	36
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	144, 168
BstFNI	CGCG	2 cut(s)	162, 187
BstHHI	GCGC	2 cut(s)	164, 189
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	91, 223
BstSFI	CTRYAG	1 cut(s)	356
BstUI	CGCG	2 cut(s)	162, 187
BstV1I	GCAGC	2 cut(s)	55, 245
BstV2I	GAAGAC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	144, 168
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	2 cut(s)	164, 189
CseI	GACGC	2 cut(s)	168, 232
Csp6I	GTAC	2 cut(s)	22, 31
CviAII	CATG	3 cut(s)	88, 109, 220
CviJI	RGCY	4 cut(s)	5, 68, 113, 118
CviKI_1	RGCY	4 cut(s)	5, 68, 113, 118
CviQI	GTAC	2 cut(s)	22, 31
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	3 cut(s)	91, 112, 223
FaiI	YATR	6 cut(s)	89, 110, 216, 221, 315, 358
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	87, 108, 219
Fnu4HI	GCNGC	3 cut(s)	69, 105, 259
FokI	GGATG	2 cut(s)	131, 155
Fsp4HI	GCNGC	3 cut(s)	69, 105, 259
GlaI	GCGC	2 cut(s)	163, 188
GluI	GCNGC	3 cut(s)	69, 105, 259
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	2 cut(s)	168, 232
HhaI	GCGC	2 cut(s)	164, 189
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	91, 112, 223
Hin6I	GCGC	2 cut(s)	162, 187
HinP1I	GCGC	2 cut(s)	162, 187
HinfI	GANTC	3 cut(s)	266, 279, 320
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	41, 211, 265, 278
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	91, 112, 223
HspAI	GCGC	2 cut(s)	162, 187
Kzo9I	GATC	1 cut(s)	36
LpnPI	CCDG	2 cut(s)	209, 209
Lsp1109I	GCAGC	2 cut(s)	55, 245
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	172, 238
MluCI	AATT	2 cut(s)	272, 291
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	2 cut(s)	234, 301
MnlI	CCTC	9 cut(s)	16, 19, 22, 28, 134, 143, 146, 217, 314
MroXI	GAANNNNTTC	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	162, 187
MwoI	GCNNNNNNNGC	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	3 cut(s)	91, 112, 223
NspI	RCATGY	2 cut(s)	91, 223
PaeI	GCATGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	266, 320
PkrI	GCNGC	3 cut(s)	70, 106, 260
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
RsaI	GTAC	2 cut(s)	23, 32
RsaNI	GTAC	2 cut(s)	22, 31
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	3 cut(s)	69, 105, 259
Sau3AI	GATC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	273
SetI	ASST	2 cut(s)	20, 135
SfcI	CTRYAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	2 cut(s)	272, 291
SsiI	CCGC	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	2 cut(s)	14, 84
TasI	AATT	2 cut(s)	272, 291
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	266, 320
TseI	GCWGC	2 cut(s)	68, 258
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	137
XceI	RCATGY	2 cut(s)	91, 223
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.