Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

125048 .. 125713

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ctggcctttttggccctagcggctcgggcttttcaagttggtcgtgttggtcctgcagctcatcggtcctataggtgcattgttcgctatggataccgagatgttcaccaggatgttgactcctttgaatcccagctagttgagaagctgtctgatttcatccgttatgactggtatcgaactcgtagaactagctcaggcactgaagatgatgcgtcacgctctactgatattagtgactgtagattggctgtgattggaacagtggcattgtctggtgtaccagcttatgagatggaggagactctgcagacaagtgtatctggttttgcaactgttgaaagtgtcacagatgttattgagatggcacccgtagaaagaagagtgaggtttgcaattgatgatcaggagtctcaggctgatacgctgactgacaatgacatgttacgagaagagctccacgatctgcatgaagctcagcaagccgggaccgcgtttatacttgggcatacacatgttaaagcaaagcaaggctcatcggtgatgaagagattggccattaacttcggatacaatttcatgaggaggaactgcaggggggcggatgtggcgctcaaggtgccaccagtgtcgcttcttgaggttggcatggtctatattgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

221

Amino Acids

24.7

Weight (kDa)

5.54

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans_C	PF22776	11 - 219	7.9e-15	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	367, 619
AccII	CGCG	1 cut(s)	494
AciI	CCGC	3 cut(s)	20, 492, 602
AcoI	YGGCCR	1 cut(s)	555
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	282
AflIII	ACRYGT	2 cut(s)	441, 514
AgsI	TTSAA	3 cut(s)	35, 128, 341
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	7 cut(s)	59, 136, 148, 195, 287, 457, 476
AluI	AGCT	7 cut(s)	59, 136, 148, 195, 287, 457, 476
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	296, 417
AlwNI	CAGNNNCTG	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	3 cut(s)	3, 12, 555
ApeKI	GCWGC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	4 cut(s)	13, 50, 66, 489
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	2 cut(s)	98, 553
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	3 cut(s)	50, 66, 489
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BalI	TGGCCA	1 cut(s)	557
BanI	GGYRCC	2 cut(s)	367, 619
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	289, 358
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	2 cut(s)	86, 563
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	296, 417
BfaI	CTAG	3 cut(s)	17, 137, 192
BfmI	CTRYAG	5 cut(s)	54, 70, 241, 308, 592
BfoI	RGCGCY	1 cut(s)	614
BfuI	GTATCC	2 cut(s)	86, 563
BglI	GCCNNNNNGGC	2 cut(s)	11, 20
BisI	GCNGC	2 cut(s)	21, 57
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	2 cut(s)	22, 58
Bme1390I	CCNGG	2 cut(s)	110, 487
Bme18I	GGWCC	3 cut(s)	50, 66, 489
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	4 cut(s)	13, 50, 66, 489
BmiI	GGNNCC	3 cut(s)	369, 490, 621
BmrFI	CCNGG	2 cut(s)	110, 487
BmsI	GCATC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
Bpu10I	CCTNAGC	1 cut(s)	196
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	599, 659
BpuMI	CCSGG	1 cut(s)	487
Bse1I	ACTGG	2 cut(s)	176, 626
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	3 cut(s)	118, 159, 610
BseMII	CTCAG	3 cut(s)	210, 428, 491
BseNI	ACTGG	2 cut(s)	176, 626
BseRI	GAGGAG	2 cut(s)	314, 598
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	3 cut(s)	5, 14, 557
BshNI	GGYRCC	2 cut(s)	367, 619
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	502
BsmAI	GTCTC	2 cut(s)	296, 417
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	3 cut(s)	5, 14, 557
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	403, 463
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	3 cut(s)	20, 492, 602
BspANI	GGCC	3 cut(s)	5, 14, 557
BspCNI	CTCAG	3 cut(s)	209, 427, 490
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	3 cut(s)	369, 490, 621
BspMAI	CTGCAG	3 cut(s)	58, 312, 596
BspQI	GCTCTTC	1 cut(s)	447
BspT107I	GGYRCC	2 cut(s)	367, 619
BsrI	ACTGG	2 cut(s)	176, 626
BssMI	GATC	2 cut(s)	403, 463
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	242, 265, 337
Bst6I	CTCTTC	3 cut(s)	376, 447, 542
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	3 cut(s)	196, 414, 477
BstF5I	GGATG	3 cut(s)	118, 159, 610
BstFNI	CGCG	1 cut(s)	494
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	2 cut(s)	406, 466
BstMAI	GTCTC	2 cut(s)	296, 417
BstMBI	GATC	2 cut(s)	403, 463
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 20, 26, 84, 482, 491, 608, 619
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	445, 518
BstSCI	CCNGG	2 cut(s)	108, 485
BstSFI	CTRYAG	5 cut(s)	54, 70, 241, 308, 592
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	68
BsuI	GTATCC	2 cut(s)	86, 563
BsuRI	GGCC	3 cut(s)	5, 14, 557
BtsCI	GGATG	3 cut(s)	118, 159, 610
BtsIMutI	CAGTG	3 cut(s)	201, 270, 633
Cac8I	GCNNGC	1 cut(s)	483
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	4 cut(s)	13, 50, 66, 489
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	5 cut(s)	442, 470, 515, 580, 649
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	3 cut(s)	196, 414, 477
DpnI	GATC	2 cut(s)	405, 465
DpnII	GATC	2 cut(s)	403, 463
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	3 cut(s)	376, 447, 542
EarI	CTCTTC	3 cut(s)	376, 447, 542
EciI	GGCGGA	1 cut(s)	617
Ecl136II	GAGCTC	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	3 cut(s)	50, 66, 489
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	459
FaeI	CATG	5 cut(s)	445, 473, 518, 583, 652
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	5 cut(s)	441, 469, 514, 579, 648
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	21, 57
FokI	GGATG	3 cut(s)	125, 146, 617
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	2 cut(s)	21, 57
FspBI	CTAG	3 cut(s)	17, 137, 192
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	2 cut(s)	21, 57
GsaI	CCCAGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	3 cut(s)	5, 14, 557
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	5 cut(s)	445, 473, 518, 583, 652
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	119, 128, 304, 410
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	2 cut(s)	98, 553
Hpy166II	GTNNAC	3 cut(s)	106, 118, 281
Hpy188I	TCNGA	2 cut(s)	154, 569
Hpy188III	TCNNGA	3 cut(s)	407, 580, 638
Hpy8I	GTNNAC	3 cut(s)	106, 118, 281
HpyCH4III	ACNGT	3 cut(s)	242, 265, 337
HpyCH4V	TGCA	7 cut(s)	56, 78, 310, 332, 395, 469, 594
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 20, 26, 84, 482, 491, 608, 619
HpyF3I	CTNAG	3 cut(s)	196, 414, 477
Hsp92II	CATG	5 cut(s)	445, 473, 518, 583, 652
HspAI	GCGC	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	403, 463
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	462
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	3 cut(s)	17, 137, 192
MaeIII	GTNAC	4 cut(s)	216, 236, 346, 444
MalI	GATC	2 cut(s)	405, 465
MboI	GATC	2 cut(s)	403, 463
MboII	GAAGA	4 cut(s)	218, 393, 464, 559
MfeI	CAATTG	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	459
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	2 cut(s)	396, 574
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	3 cut(s)	113, 298, 419
MnlI	CCTC	5 cut(s)	292, 381, 576, 579, 634
Mox20I	TGGCCA	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	2 cut(s)	519, 561
MslI	CAYNNNNRTG	2 cut(s)	111, 513
Msp20I	TGGCCA	1 cut(s)	557
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	2 cut(s)	110, 487
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	8 cut(s)	11, 20, 26, 84, 482, 491, 608, 619
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	2 cut(s)	403, 463
NlaIII	CATG	5 cut(s)	445, 473, 518, 583, 652
NlaIV	GGNNCC	3 cut(s)	369, 490, 621
NmuCI	GTSAC	3 cut(s)	216, 236, 346
NspI	RCATGY	2 cut(s)	445, 518
PagI	TCATGA	1 cut(s)	579
PciI	ACATGT	2 cut(s)	441, 514
PciSI	GCTCTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	22, 58
PleI	GAGTC	3 cut(s)	113, 298, 418
PpsI	GAGTC	3 cut(s)	113, 298, 418
PscI	ACATGT	2 cut(s)	441, 514
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	369, 490, 621
PspPI	GGNCC	4 cut(s)	13, 50, 66, 489
PstI	CTGCAG	3 cut(s)	58, 312, 596
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	111, 513
SacI	GAGCTC	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	519, 561
SatI	GCNGC	2 cut(s)	21, 57
Sau3AI	GATC	2 cut(s)	403, 463
Sau96I	GGNCC	4 cut(s)	13, 50, 66, 489
SchI	GAGTC	3 cut(s)	113, 298, 419
ScrFI	CCNGG	2 cut(s)	110, 487
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	5 cut(s)	54, 70, 241, 308, 592
SfiI	GGCCNNNNNGGCC	1 cut(s)	11
SinI	GGWCC	3 cut(s)	50, 66, 489
SmiMI	CAYNNNNRTG	2 cut(s)	111, 513
SmlI	CTYRAG	2 cut(s)	614, 638
SmoI	CTYRAG	2 cut(s)	614, 638
Sse9I	AATT	2 cut(s)	396, 574
SsiI	CCGC	3 cut(s)	20, 492, 602
SspMI	CTAG	3 cut(s)	17, 137, 192
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	108, 485
TaaI	ACNGT	3 cut(s)	242, 265, 337
TaqI	TCGA	1 cut(s)	178
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	396, 574
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	519, 561
Tru9I	TTAA	2 cut(s)	519, 561
TscAI	CASTG	3 cut(s)	208, 270, 633
TseFI	GTSAC	3 cut(s)	216, 236, 346
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	3 cut(s)	216, 236, 346
TspDTI	ATGAA	4 cut(s)	148, 486, 560, 568
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	3 cut(s)	208, 270, 633
VpaK11BI	GGWCC	3 cut(s)	50, 66, 489
XceI	RCATGY	2 cut(s)	445, 518
XspI	CTAG	3 cut(s)	17, 137, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.