Rmu_sc0001768.1_g000040

Belongs to the eukaryotic ribosomal protein eS8 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001768.1
N/A
Physical Location & Seq
Reverse (-)
150715 .. 155144
4430 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1467 bp
atggcggccgcagctcgggctttcactctctctcgcctcatcgacctgtcactcaagccccgccacccacaaccaccaccgcctcccgtttcccgccaccacctcctcgcccgccaattacttccctccttccgtgcccaacagcgtcgtctggcctgctcggcttccacaatccgatgcctcatctccggcgtcggtggcggcggcgtgtccgacgactccgttatctccaaaggcgtttccgattccgctaaggactcgatgaagcagaccatctctactatgcttggattgctgccgtccggtcagttctccgtcaccgttagggtttgcagagctccccttgatcgcctcctcgcctcttccataatcaccggtggtttagattatggatcaggtatacactgtggaacgcggaatgggagttcggagacggtggatggtgaggaaaggggtagcgagaatggatttggggcgagtaatcaatacctgggctcaacaactcctcaagttttcggggatttgtctccggaggctttgaattacatccagaggttgcaatcggagttaactaatgttaaggagaaagtattccttaagacgagaagaggatttgttcgcatagccatggagaatggctatcccctggtttcagttttctgctttggtcaggtatcaccttcttattatctagtttttcatggtatttccagggactctatgcacaagaggcgcaccactggtggcaagaagaaagcttggaggaagaagcgaaagtatgagcttggtcgtcagccggcaaataccaagatctcaagcaacaaaactgtaagaagaattcgtgttagaggtggcaatttgaagtggagggccctgagattggatattgggaacttttcttggggtagtgaggctgttactcgcaagactcgtattcttgatgtcgtttacaatgcctcaaacaacgaacttggtaggacacagactcttgtgaagagtgcaattgttcaggtggatgctgctccttttaggcaatggtatctacagcactacaatgttgatatcgggaggaagaaaaagacagctgcaaaaaaggatgccaaagatgctgctacggaggtgatgagagtttataataccctatcaatggcttatatacagcagcgtcctttttctattattgtttatgaagctgcaatgagttttcgaatagaggcagatggcaccacagaagaaaccaaaaatagcagcaatctcctgaggaagcttgagaagctccagaaagatcgtactcttgattcctacatcgaagagcagtttagtggtggtaggttgttggcttgcatttcttcccgcccaggccaatgtggaagatctgatgggtacattttggaggggaaagaattagagttttacatgaagaaactccagaggaagaagggaaaggcagctggtgctgctgcataa

Protein Analysis

488

Amino Acids

54.09

Weight (kDa)

10.12

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 75 - 126 6e-10 Protein of unknown function (DUF760)
DAGAT PF03982 193 - 225 2.1e-07 Diacylglycerol acyltransferase
Ribosomal_S8e PF01201 238 - 464 4.1e-51 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1134
AccB1I GGYRCC 1 cut(s) 1223
AccI GTMKAC 1 cut(s) 400
AccII CGCG 1 cut(s) 415
AccIII TCCGGA 1 cut(s) 529
AclWI GGATC 1 cut(s) 400
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 2 cut(s) 1291, 1385
AfiI CCNNNNNNNGG 3 cut(s) 15, 880, 1147
AflII CTTAAG 1 cut(s) 596
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 2 cut(s) 541, 862
AjnI CCWGG 4 cut(s) 489, 645, 710, 1357
AloI GAACNNNNNNTCC 2 cut(s) 409, 441
AluBI AGCT 9 cut(s) 14, 338, 758, 784, 1085, 1193, 1267, 1276, 1451
AluI AGCT 9 cut(s) 14, 338, 758, 784, 1085, 1193, 1267, 1276, 1451
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 2 cut(s) 425, 531
AlwI GGATC 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 15
Aor13HI TCCGGA 1 cut(s) 529
AoxI GGCC 4 cut(s) 6, 153, 870, 1360
ApaI GGGCCC 1 cut(s) 874
ApoI RAATTY 1 cut(s) 837
AsiGI ACCGGT 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 590
AspLEI GCGC 1 cut(s) 735
AspS9I GGNCC 2 cut(s) 870, 871
AsuHPI GGTGA 5 cut(s) 310, 364, 455, 669, 1132
AsuII TTCGAA 1 cut(s) 1207
AvaI CYCGRG 1 cut(s) 15
AxyI CCTNAGG 1 cut(s) 1259
BaeGI GKGCMC 2 cut(s) 139, 874
BanI GGYRCC 1 cut(s) 1223
BanII GRGCYC 3 cut(s) 340, 497, 874
Bbv12I GWGCWC 1 cut(s) 340
BccI CCATC 4 cut(s) 281, 434, 1214, 1373
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 4 cut(s) 491, 647, 712, 1359
BcoDI GTCTC 2 cut(s) 425, 531
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 1 cut(s) 1043
BfrI CTTAAG 1 cut(s) 596
BglI GCCNNNNNGGC 1 cut(s) 161
BglII AGATCT 2 cut(s) 810, 1373
Bme1390I CCNGG 4 cut(s) 491, 647, 712, 1359
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 870, 871
BmiI GGNNCC 2 cut(s) 872, 1225
BmrFI CCNGG 4 cut(s) 491, 647, 712, 1359
BmsI GCATC 4 cut(s) 167, 1006, 1087, 1096
BpmI CTGGAG 2 cut(s) 1262, 1412
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 1207
BpuEI CTTGAG 4 cut(s) 38, 492, 799, 1289
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 5 cut(s) 490, 627, 645, 711, 1357
BsaWI WCCGGW 3 cut(s) 302, 374, 529
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 880, 1147
Bse118I RCCGGY 2 cut(s) 374, 796
Bse1I ACTGG 1 cut(s) 745
Bse21I CCTNAGG 1 cut(s) 1259
Bse3DI GCAATG 2 cut(s) 1040, 1203
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 4 cut(s) 491, 647, 712, 1359
BseDI CCNNGG 5 cut(s) 490, 627, 645, 711, 1357
BseGI GGATG 4 cut(s) 445, 546, 1021, 1102
BseLI CCNNNNNNNGG 3 cut(s) 15, 880, 1147
BseMI GCAATG 2 cut(s) 1040, 1203
BseMII CTCAG 2 cut(s) 866, 1250
BseNI ACTGG 1 cut(s) 745
BseRI GAGGAG 3 cut(s) 95, 344, 495
BseSI GKGCMC 2 cut(s) 139, 874
BseX3I CGGCCG 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 415
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 8, 155, 872, 1362
BshNI GGYRCC 1 cut(s) 1223
BshTI ACCGGT 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 5 cut(s) 189, 303, 375, 530, 797
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 3 cut(s) 15, 880, 1147
BsmAI GTCTC 2 cut(s) 425, 531
BsmBI CGTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 4 cut(s) 8, 155, 872, 1362
BsoBI CYCGRG 1 cut(s) 15
Bsp119I TTCGAA 1 cut(s) 1207
Bsp120I GGGCCC 1 cut(s) 870
Bsp1286I GDGCHC 4 cut(s) 139, 340, 497, 874
Bsp13I TCCGGA 1 cut(s) 529
Bsp143I GATC 5 cut(s) 346, 392, 810, 1285, 1373
Bsp19I CCATGG 1 cut(s) 627
BspANI GGCC 4 cut(s) 8, 155, 872, 1362
BspCNI CTCAG 2 cut(s) 867, 1251
BspEI TCCGGA 1 cut(s) 529
BspFNI CGCG 1 cut(s) 415
BspLI GGNNCC 2 cut(s) 872, 1225
BspPI GGATC 1 cut(s) 400
BspQI GCTCTTC 1 cut(s) 1305
BspT104I TTCGAA 1 cut(s) 1207
BspT107I GGYRCC 1 cut(s) 1223
BspTI CTTAAG 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 1040, 1203
BsrFI RCCGGY 2 cut(s) 374, 796
BsrI ACTGG 1 cut(s) 745
BssAI RCCGGY 2 cut(s) 374, 796
BssECI CCNNGG 5 cut(s) 490, 627, 645, 711, 1357
BssMI GATC 5 cut(s) 346, 392, 810, 1285, 1373
BssNAI GTATAC 1 cut(s) 401
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 627
Bst1107I GTATAC 1 cut(s) 401
Bst2UI CCWGG 4 cut(s) 491, 647, 712, 1359
Bst4CI ACNGT 4 cut(s) 322, 407, 436, 829
Bst6I CTCTTC 4 cut(s) 367, 601, 989, 1305
BstACI GRCGYC 1 cut(s) 192
BstAFI CTTAAG 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 1454
BstBI TTCGAA 1 cut(s) 1207
BstC8I GCNNGC 4 cut(s) 112, 157, 798, 1342
BstDEI CTNAG 3 cut(s) 252, 875, 1259
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 4 cut(s) 445, 546, 1021, 1102
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 5 cut(s) 349, 395, 813, 1288, 1376
BstMAI GTCTC 2 cut(s) 425, 531
BstMBI GATC 5 cut(s) 346, 392, 810, 1285, 1373
BstMCI CGRYCG 1 cut(s) 9
BstNI CCWGG 4 cut(s) 491, 647, 712, 1359
BstSCI CCNGG 4 cut(s) 489, 645, 710, 1357
BstSFI CTRYAG 1 cut(s) 1043
BstSLI GKGCMC 2 cut(s) 139, 874
BstUI CGCG 1 cut(s) 415
BstX2I RGATCY 2 cut(s) 810, 1373
BstYI RGATCY 2 cut(s) 810, 1373
BstZ17I GTATAC 1 cut(s) 401
BstZI CGGCCG 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 1259
BsuRI GGCC 4 cut(s) 8, 155, 872, 1362
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 4 cut(s) 445, 546, 1021, 1102
BtsIMutI CAGTG 2 cut(s) 403, 738
Cac8I GCNNGC 4 cut(s) 112, 157, 798, 1342
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 735
Cfr10I RCCGGY 2 cut(s) 374, 796
Cfr13I GGNCC 2 cut(s) 870, 871
CseI GACGC 3 cut(s) 134, 181, 1154
Csp6I GTAC 2 cut(s) 1290, 1384
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 3 cut(s) 628, 701, 1417
CviQI GTAC 2 cut(s) 1290, 1384
DdeI CTNAG 3 cut(s) 252, 875, 1259
DpnI GATC 5 cut(s) 348, 394, 812, 1287, 1375
DpnII GATC 5 cut(s) 346, 392, 810, 1285, 1373
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 4 cut(s) 367, 601, 989, 1305
EarI CTCTTC 4 cut(s) 367, 601, 989, 1305
Ecl136II GAGCTC 1 cut(s) 338
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 3 cut(s) 340, 497, 874
Eco32I GATATC 1 cut(s) 1063
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 1259
Eco88I CYCGRG 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 338
EcoO109I RGGNCCY 2 cut(s) 870, 871
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 4 cut(s) 489, 645, 710, 1357
EcoRV GATATC 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 3 cut(s) 340, 497, 874
ErhI CCWWGG 1 cut(s) 627
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 3 cut(s) 631, 704, 1420
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 728
FatI CATG 3 cut(s) 627, 700, 1416
FauI CCCGC 4 cut(s) 68, 101, 119, 1361
FblI GTMKAC 1 cut(s) 400
FokI GGATG 4 cut(s) 452, 533, 1028, 1109
FriOI GRGCYC 3 cut(s) 340, 497, 874
FspBI CTAG 1 cut(s) 692
GlaI GCGC 1 cut(s) 734
GsuI CTGGAG 2 cut(s) 1262, 1412
HaeIII GGCC 4 cut(s) 8, 155, 872, 1362
HapII CCGG 5 cut(s) 189, 303, 375, 530, 797
HgaI GACGC 3 cut(s) 134, 181, 1154
HhaI GCGC 1 cut(s) 735
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 3 cut(s) 631, 704, 1420
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 2 cut(s) 756, 1265
HinfI GANTC 7 cut(s) 218, 245, 257, 716, 928, 985, 1298
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 5 cut(s) 189, 303, 375, 530, 797
HphI GGTGA 5 cut(s) 310, 364, 455, 669, 1132
Hpy166II GTNNAC 3 cut(s) 401, 570, 949
Hpy188I TCNGA 6 cut(s) 176, 214, 244, 430, 565, 1378
Hpy188III TCNNGA 8 cut(s) 530, 550, 938, 1066, 1258, 1279, 1295, 1429
Hpy8I GTNNAC 3 cut(s) 401, 570, 949
Hpy99I CGWCG 3 cut(s) 150, 197, 218
HpyAV CCTTC 3 cut(s) 139, 690, 1432
HpyCH4III ACNGT 4 cut(s) 322, 407, 436, 829
HpyCH4V TGCA 8 cut(s) 333, 559, 724, 1001, 1088, 1196, 1344, 1463
HpyF3I CTNAG 3 cut(s) 252, 875, 1259
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 3 cut(s) 631, 704, 1420
HspAI GCGC 1 cut(s) 733
Kpn2I TCCGGA 1 cut(s) 529
KroI GCCGGC 1 cut(s) 796
KroNI GCCGGC 1 cut(s) 798
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 5 cut(s) 346, 392, 810, 1285, 1373
LguI GCTCTTC 1 cut(s) 1305
LmnI GCTCC 3 cut(s) 343, 1027, 1281
LweI GCATC 4 cut(s) 167, 1006, 1087, 1096
MaeI CTAG 1 cut(s) 692
MaeIII GTNAC 3 cut(s) 48, 316, 916
MalI GATC 5 cut(s) 348, 394, 812, 1287, 1375
MboI GATC 5 cut(s) 346, 392, 810, 1285, 1373
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 2 cut(s) 810, 1373
MhlI GDGCHC 4 cut(s) 139, 340, 497, 874
MluCI AATT 6 cut(s) 116, 541, 837, 856, 1002, 1403
MlyI GAGTC 5 cut(s) 212, 251, 710, 922, 979
MmeI TCCRAC 1 cut(s) 237
MroI TCCGGA 1 cut(s) 529
MroNI GCCGGC 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 590
MseI TTAA 3 cut(s) 569, 579, 597
MslI CAYNNNNRTG 2 cut(s) 626, 1053
MspA1I CMGCKG 2 cut(s) 1085, 1451
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 5 cut(s) 189, 303, 375, 530, 797
MspR9I CCNGG 4 cut(s) 491, 647, 712, 1359
MunI CAATTG 1 cut(s) 1002
MvaI CCWGG 4 cut(s) 491, 647, 712, 1359
MvnI CGCG 1 cut(s) 415
NaeI GCCGGC 1 cut(s) 798
NcoI CCATGG 1 cut(s) 627
NdeII GATC 5 cut(s) 346, 392, 810, 1285, 1373
NgoMIV GCCGGC 1 cut(s) 796
NlaIII CATG 3 cut(s) 631, 704, 1420
NlaIV GGNNCC 2 cut(s) 872, 1225
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 48, 316
NotI GCGGCCGC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 1207
PciSI GCTCTTC 1 cut(s) 1305
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PdiI GCCGGC 1 cut(s) 798
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 245, 1298
PinAI ACCGGT 1 cut(s) 374
PleI GAGTC 5 cut(s) 212, 251, 710, 922, 979
PpsI GAGTC 5 cut(s) 212, 251, 710, 922, 979
PsiI TTATAA 1 cut(s) 1134
Psp124BI GAGCTC 1 cut(s) 340
Psp6I CCWGG 4 cut(s) 489, 645, 710, 1357
PspGI CCWGG 4 cut(s) 489, 645, 710, 1357
PspN4I GGNNCC 2 cut(s) 872, 1225
PspOMI GGGCCC 1 cut(s) 870
PspPI GGNCC 2 cut(s) 870, 871
PsuI RGATCY 2 cut(s) 810, 1373
PvuII CAGCTG 2 cut(s) 1085, 1451
RsaI GTAC 2 cut(s) 1291, 1385
RsaNI GTAC 2 cut(s) 1290, 1384
RseI CAYNNNNRTG 2 cut(s) 626, 1053
SacI GAGCTC 1 cut(s) 340
SapI GCTCTTC 1 cut(s) 1305
SaqAI TTAA 3 cut(s) 569, 579, 597
Sau3AI GATC 5 cut(s) 346, 392, 810, 1285, 1373
Sau96I GGNCC 2 cut(s) 870, 871
SchI GAGTC 5 cut(s) 212, 251, 710, 922, 979
ScrFI CCNGG 4 cut(s) 491, 647, 712, 1359
SduI GDGCHC 4 cut(s) 139, 340, 497, 874
SfaNI GCATC 4 cut(s) 167, 1006, 1087, 1096
SfcI CTRYAG 1 cut(s) 1043
SfuI TTCGAA 1 cut(s) 1207
SgrAI CRCCGGYG 1 cut(s) 374
SmiMI CAYNNNNRTG 2 cut(s) 626, 1053
SmlI CTYRAG 5 cut(s) 53, 507, 596, 814, 1268
SmoI CTYRAG 5 cut(s) 53, 507, 596, 814, 1268
Sse9I AATT 6 cut(s) 116, 541, 837, 856, 1002, 1403
SspMI CTAG 1 cut(s) 692
SstI GAGCTC 1 cut(s) 340
StyD4I CCNGG 4 cut(s) 489, 645, 710, 1357
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 4 cut(s) 322, 407, 436, 829
TaqI TCGA 4 cut(s) 42, 260, 1207, 1308
TasI AATT 6 cut(s) 116, 541, 837, 856, 1002, 1403
TauI GCSGC 4 cut(s) 8, 11, 204, 207
TfiI GAWTC 2 cut(s) 245, 1298
Tru1I TTAA 3 cut(s) 569, 579, 597
Tru9I TTAA 3 cut(s) 569, 579, 597
TscAI CASTG 2 cut(s) 410, 745
TseFI GTSAC 2 cut(s) 48, 316
Tsp45I GTSAC 2 cut(s) 48, 316
TspDTI ATGAA 4 cut(s) 278, 689, 1203, 1433
TspGWI ACGGA 4 cut(s) 122, 211, 304, 1130
TspRI CASTG 2 cut(s) 410, 745
Vha464I CTTAAG 1 cut(s) 596
XapI RAATTY 1 cut(s) 837
XmiI GTMKAC 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 590
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.