Rmu_sc0001776.1_g000001

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001776.1
N/A
Physical Location & Seq
Forward (+)
1 .. 1881
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 368 bp
gactaggatgctcatctcttgggtatggagccatggaagagataggaccttccagagtcaacagtgatggaaagacactcttccaaaatgactttgcttggaataatgttaagcacgatctgggctggtctgtgccatctggtgttcgaaaaatctggcaaactctgccggaggatctccaggtctgggtggagcgccggaagcctgcttgggtcgacgacgagacgtcgtcgtttgtggtacgacgtcgggtcttgcgtaggagaatgacggtccagcgacgtgttggaggtttgagatggtctgggtcgtcggttccggttcaagtagcaaggttcgggtctgggtcgaaggacgccggagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

10.51

Isoelectric Point (pI)

66.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 2 - 38 1.9e-08 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 229, 249
AccI GTMKAC 1 cut(s) 215
AclWI GGATC 1 cut(s) 182
AcyI GRCGYC 3 cut(s) 226, 246, 356
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 1 cut(s) 325
AhdI GACNNNNNGTC 2 cut(s) 225, 250
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 46, 273
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 46, 273
BccI CCATC 3 cut(s) 61, 144, 293
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 4
BfoI RGCGCY 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 2 cut(s) 46, 273
BmeRI GACNNNNNGTC 2 cut(s) 225, 250
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 46, 273
BmiI GGNNCC 2 cut(s) 30, 317
BmrFI CCNGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 3 cut(s) 226, 246, 356
BsaJI CCNNGG 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 186
BsiSI CCGG 4 cut(s) 169, 198, 319, 359
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
Bsp119I TTCGAA 1 cut(s) 147
Bsp143I GATC 2 cut(s) 117, 174
Bsp19I CCATGG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 30, 317
BspPI GGATC 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 2 cut(s) 117, 174
BssNI GRCGYC 3 cut(s) 226, 246, 356
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 64, 273
Bst6I CTCTTC 2 cut(s) 32, 85
BstACI GRCGYC 3 cut(s) 226, 246, 356
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 120, 177
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 117, 174
BstMWI GCNNNNNNNGC 2 cut(s) 165, 201
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 32
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 46, 273
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 33
CviJI RGCY 3 cut(s) 31, 125, 204
CviKI_1 RGCY 3 cut(s) 31, 125, 204
CviQI GTAC 1 cut(s) 241
DpnI GATC 2 cut(s) 119, 176
DpnII GATC 2 cut(s) 117, 174
DriI GACNNNNNGTC 2 cut(s) 225, 250
Eam1104I CTCTTC 2 cut(s) 32, 85
Eam1105I GACNNNNNGTC 2 cut(s) 225, 250
EarI CTCTTC 2 cut(s) 32, 85
Eco130I CCWWGG 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 46, 273
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 1 cut(s) 36
FaiI YATR 2 cut(s) 26, 34
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FatI CATG 1 cut(s) 32
FblI GTMKAC 1 cut(s) 215
FokI GGATG 1 cut(s) 20
FspBI CTAG 1 cut(s) 4
GlaI GCGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 198
HapII CCGG 4 cut(s) 169, 198, 319, 359
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 3 cut(s) 226, 246, 356
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 2 cut(s) 60, 216
HindII GTYRAC 2 cut(s) 60, 216
HinfI GANTC 1 cut(s) 56
HpaII CCGG 4 cut(s) 169, 198, 319, 359
Hpy166II GTNNAC 2 cut(s) 60, 216
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 60, 216
Hpy99I CGWCG 8 cut(s) 220, 223, 231, 234, 248, 251, 284, 315
HpyAV CCTTC 2 cut(s) 59, 345
HpyCH4III ACNGT 2 cut(s) 64, 273
HpyCH4IV ACGT 3 cut(s) 226, 246, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 201
HpySE526I ACGT 3 cut(s) 226, 246, 282
Hsp92I GRCGYC 3 cut(s) 226, 246, 356
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 117, 174
LmnI GCTCC 2 cut(s) 28, 192
MaeI CTAG 1 cut(s) 4
MaeII ACGT 3 cut(s) 226, 246, 282
MalI GATC 2 cut(s) 119, 176
MboI GATC 2 cut(s) 117, 174
MboII GAAGA 2 cut(s) 49, 72
MflI RGATCY 1 cut(s) 174
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 2 cut(s) 165, 283
MseI TTAA 1 cut(s) 110
MspI CCGG 4 cut(s) 169, 198, 319, 359
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 165, 201
NcoI CCATGG 1 cut(s) 32
NdeII GATC 2 cut(s) 117, 174
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 30, 317
NspV TTCGAA 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PflFI GACNNNGTC 1 cut(s) 228
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 30, 317
PspPI GGNCC 2 cut(s) 46, 273
PspPPI RGGWCCY 1 cut(s) 46
PsuI RGATCY 1 cut(s) 174
PsyI GACNNNGTC 1 cut(s) 228
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 110
Sau3AI GATC 2 cut(s) 117, 174
Sau96I GGNCC 2 cut(s) 46, 273
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 181
SetI ASST 7 cut(s) 51, 185, 229, 249, 285, 294, 337
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 2 cut(s) 46, 273
SspMI CTAG 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 64, 273
TaiI ACGT 3 cut(s) 229, 249, 285
TaqI TCGA 3 cut(s) 147, 215, 349
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 69
TspRI CASTG 1 cut(s) 69
Tth111I GACNNNGTC 1 cut(s) 228
VpaK11BI GGWCC 2 cut(s) 46, 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 215
XspI CTAG 1 cut(s) 4
ZraI GACGTC 2 cut(s) 227, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.