Rmu_sc0001782.1_g000052

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001782.1
N/A
Physical Location & Seq
Forward (+)
248678 .. 249133
456 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
atggtgttatactcgggaggcagaccattgagagctaagatgataatgtcttcatcaggaaaatgtacacctacaaaagccaacttgtctctctctcataggcacaagtcgcaggtgagctccgccgtagcacaagaagaagagtcagaagaagaaagcaggagcgagaaaaatggcgatggcaagcaaagtgaaagatgtgtcccctcacgagtttgcaaggcctatgctgctcatcttaaacaatccgacaagattgagcttcctgaatggaccgatatcatgaagactactacatttaaggagctagctccttatgaccctgattggtattatatcagagctacatctatggcaaggaaaatctacttgaggggtggtcttggtgttggtgccttatgtaggatctatcgaggaagcaagaggaacggaagccgcccaccacactatggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19e

Protein Analysis

151

Amino Acids

16.93

Weight (kDa)

9.58

Isoelectric Point (pI)

71.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19e PF01090 69 - 150 8.7e-31 Ribosomal protein S19e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 103
AccB1I GGYRCC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 449
AciI CCGC 2 cut(s) 123, 436
AclWI GGATC 1 cut(s) 413
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 402, 449
AluBI AGCT 6 cut(s) 35, 120, 262, 307, 311, 344
AluI AGCT 6 cut(s) 35, 120, 262, 307, 311, 344
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 307
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 122
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 42, 293
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 2 cut(s) 231, 436
BlsI GCNGC 2 cut(s) 232, 437
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 394
BmtI GCTAGC 1 cut(s) 311
BpiI GAAGAC 2 cut(s) 42, 293
BpuEI CTTGAG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 449
BseLI CCNNNNNNNGG 2 cut(s) 402, 449
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 402, 449
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 224
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 122
Bsp1407I TGTACA 1 cut(s) 65
Bsp143I GATC 1 cut(s) 405
BspACI CCGC 2 cut(s) 123, 436
BspANI GGCC 1 cut(s) 224
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 65
BssMI GATC 1 cut(s) 405
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 185, 309
BstDEI CTNAG 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 400
BstKTI GATC 1 cut(s) 408
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 405
BstMWI GCNNNNNNNGC 2 cut(s) 109, 230
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 2 cut(s) 42, 293
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
BsuRI GGCC 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 185, 309
CciI TCATGA 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 66
CviAII CATG 1 cut(s) 283
CviJI RGCY 9 cut(s) 35, 80, 120, 224, 262, 307, 311, 344, 435
CviKI_1 RGCY 9 cut(s) 35, 80, 120, 224, 262, 307, 311, 344, 435
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 36
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 122
FaeI CATG 1 cut(s) 286
FaiI YATR 9 cut(s) 10, 99, 228, 284, 318, 336, 353, 400, 450
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 231, 436
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 231, 436
FspBI CTAG 1 cut(s) 308
GluI GCNGC 2 cut(s) 231, 436
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 1 cut(s) 286
HinfI GANTC 1 cut(s) 143
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 148, 250, 341
Hpy188III TCNNGA 5 cut(s) 15, 57, 210, 266, 283
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 230
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 286
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 4 cut(s) 125, 162, 304, 316
LpnPI CCDG 5 cut(s) 42, 98, 145, 279, 336
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 1 cut(s) 308
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 6 cut(s) 42, 149, 152, 161, 164, 298
MflI RGATCY 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 5 cut(s) 11, 217, 366, 407, 417
MseI TTAA 2 cut(s) 240, 300
MwoI GCNNNNNNNGC 2 cut(s) 109, 230
NdeII GATC 1 cut(s) 405
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 394
PagI TCATGA 1 cut(s) 282
PaqCI CACCTGC 1 cut(s) 103
PceI AGGCCT 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 2 cut(s) 232, 437
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 405
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 240, 300
SatI GCNGC 2 cut(s) 231, 436
Sau3AI GATC 1 cut(s) 405
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 122
SetI ASST 8 cut(s) 37, 73, 117, 122, 264, 309, 313, 346
SinI GGWCC 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 2 cut(s) 123, 436
SspMI CTAG 1 cut(s) 308
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 1 cut(s) 224
TaqI TCGA 1 cut(s) 412
TaqII GACCGA 1 cut(s) 290
TatI WGTACW 1 cut(s) 65
TauI GCSGC 1 cut(s) 438
Tru1I TTAA 2 cut(s) 240, 300
Tru9I TTAA 2 cut(s) 240, 300
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 42, 299
TspGWI ACGGA 1 cut(s) 444
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 400
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.