Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001784.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

31797 .. 32526

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgatgatgaccagttcgcacatgctccaggtggcgccactcgcaccacacgctttctcatcatcatcttcttcgtcgtcccaaaccctcccagtctggttcaaccattgccattgccacccttcacggcctcaactcactccccgccaccgcccaagtcccacaatactactcgccggaaacccagataggaagttgcaagtttcttcgttatcgtggactacccaacaagaccaggaggatgaagaagaagaagaagaagatgaagacgatgaccaagaagaagaagaagaagaaaaaagtgatcctactcctgaagacctcgaatacatcagccaaatcaaaaggtttgcaatgttgtggaatatgaaggttaagcttactattgcaattgaggacataagaaagttgagcggaggagaccccttggcattgaggatcctgatgctcctaccagggaagagttggctgctgttcttgaagactaagtcctacctttttaaattcctatgcttagtgctcattgtaagcgaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.57

Weight (kDa)

4.87

Isoelectric Point (pI)

76.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	414
AciI	CCGC	3 cut(s)	145, 151, 414
AclWI	GGATC	3 cut(s)	299, 433, 446
AcsI	RAATTY	2 cut(s)	503, 533
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	103, 481
AjnI	CCWGG	3 cut(s)	27, 234, 454
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	3 cut(s)	299, 433, 446
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	2 cut(s)	503, 533
AspLEI	GCGC	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	34
BbsI	GAAGAC	3 cut(s)	273, 324, 488
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	456
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	3 cut(s)	29, 236, 456
BcoDI	GTCTC	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	471
Bme1390I	CCNGG	3 cut(s)	29, 236, 456
BmiI	GGNNCC	2 cut(s)	36, 440
BmrFI	CCNGG	3 cut(s)	29, 236, 456
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	3 cut(s)	273, 324, 488
BpmI	CTGGAG	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	426, 455
Bse1I	ACTGG	2 cut(s)	12, 92
Bse3DI	GCAATG	3 cut(s)	106, 112, 360
BseBI	CCWGG	3 cut(s)	29, 236, 456
BseDI	CCNNGG	2 cut(s)	426, 455
BseGI	GGATG	1 cut(s)	247
BseMI	GCAATG	3 cut(s)	106, 112, 360
BseNI	ACTGG	2 cut(s)	12, 92
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	456
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	64, 144
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	64, 144
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	304, 438
BspACI	CCGC	3 cut(s)	145, 151, 414
BspANI	GGCC	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	36, 440
BspPI	GGATC	3 cut(s)	299, 433, 446
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	414
BsrBI	CCGCTC	1 cut(s)	414
BsrDI	GCAATG	3 cut(s)	106, 112, 360
BsrI	ACTGG	2 cut(s)	12, 92
BssECI	CCNNGG	2 cut(s)	426, 455
BssMI	GATC	2 cut(s)	304, 438
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	3 cut(s)	29, 236, 456
Bst6I	CTCTTC	1 cut(s)	455
BstACI	GRCGYC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	486, 514
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	307, 441
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	2 cut(s)	304, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	3 cut(s)	29, 236, 456
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	27, 234, 454
BstV1I	GCAGC	1 cut(s)	456
BstV2I	GAAGAC	3 cut(s)	273, 324, 488
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	247
CfoI	GCGC	1 cut(s)	37
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	130, 336, 379, 469
CviKI_1	RGCY	4 cut(s)	130, 336, 379, 469
DdeI	CTNAG	2 cut(s)	486, 514
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	2 cut(s)	306, 440
DpnII	GATC	2 cut(s)	304, 438
DraI	TTTAAA	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	336
EcoRII	CCWGG	3 cut(s)	27, 234, 454
EcoT14I	CCWWGG	1 cut(s)	426
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	25
FaiI	YATR	4 cut(s)	23, 368, 401, 511
FaqI	GGGAC	2 cut(s)	64, 144
FatI	CATG	1 cut(s)	21
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	470
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	470
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	377
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188III	TCNNGA	3 cut(s)	314, 442, 478
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	132, 364
HpyCH4V	TGCA	3 cut(s)	199, 353, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	2 cut(s)	486, 514
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	304, 438
LmnI	GCTCC	2 cut(s)	30, 453
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	1 cut(s)	435
MalI	GATC	2 cut(s)	306, 440
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	2 cut(s)	304, 438
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	3 cut(s)	390, 503, 533
Mly113I	GGCGCC	1 cut(s)	35
MnlI	CCTC	7 cut(s)	98, 141, 232, 332, 388, 410, 429
MseI	TTAA	2 cut(s)	375, 501
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	29, 236, 456
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	3 cut(s)	29, 236, 456
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	2 cut(s)	304, 438
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	36, 440
NspI	RCATGY	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	471
PluTI	GGCGCC	1 cut(s)	38
Psp6I	CCWGG	3 cut(s)	27, 234, 454
PspGI	CCWGG	3 cut(s)	27, 234, 454
PspN4I	GGNNCC	2 cut(s)	36, 440
PsuI	RGATCY	1 cut(s)	438
PsyI	GACNNNGTC	1 cut(s)	487
SaqAI	TTAA	2 cut(s)	375, 501
SatI	GCNGC	1 cut(s)	470
Sau3AI	GATC	2 cut(s)	304, 438
ScrFI	CCNGG	3 cut(s)	29, 236, 456
SduI	GDGCHC	1 cut(s)	522
SetI	ASST	6 cut(s)	33, 324, 350, 375, 381, 498
SfaNI	GCATC	1 cut(s)	435
SfoI	GGCGCC	1 cut(s)	36
Sse9I	AATT	3 cut(s)	390, 503, 533
SsiI	CCGC	3 cut(s)	145, 151, 414
SspDI	GGCGCC	1 cut(s)	34
StyD4I	CCNGG	3 cut(s)	27, 234, 454
StyI	CCWWGG	1 cut(s)	426
TaqI	TCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	390, 503, 533
Tru1I	TTAA	2 cut(s)	375, 501
Tru9I	TTAA	2 cut(s)	375, 501
TseI	GCWGC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	258, 279, 383
Tth111I	GACNNNGTC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	503, 533
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.