Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001787.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

96897 .. 101505

Gene Structure 4609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

atggaaagtgatgaaagaaaagaacaggctgtcattgagagcgttcctctcaaacaaaagatttttggtgaacttgagaaagtttgcccttctcgttgcattttggctacaaacacatccactattgacctcaatatagttggagaaaagacgagatctcaggatcgcatcgtgggggcacactttttcagtcctgctcatgtgatgcctcttcttgaaatagtacggacagagaagacttcggcacaagtaattcttgaccttttgacggttggaaaagtaataaagaaagttcctgttgtggttggtaactgtacgggatttgcagtcaatcgggcattctttccctatacccaaggcgcacatatattggtcaattcaggtgtcgatgtgttcaggattgacaggatcatcagcaattttggccttcctatgggtccattccaacttcaggatttggcaggctatggagtagctcttgctgttggaaaggaatttgctagtgctttccctgatcgcacatttcaatcaccattggtcgaactcttagtcaaaaatggacgaaatggtaaaaacaatggaaaaggatattacacttatgaaaagggaagcaagcccaagcctgatctgtctgtgctaccaattattgaggagtctagacgaattaccaatatgatgcctggtggaaagcctttatctgttacagaccaagaaattctggagataatactctttcctgtggtgaatgaggcatgtcgtattttggatgaaggagtagttattcgagcagcagaccttgacattgcatctgttcttggcatgagtttcccaaattaccggggtggcattgtcttttgggcagatatggttgggcctaagcatatatacgctactctcaagaaatggtcaggagtatacggtggtttcttcaaaccatcaaggtttttggaagaaagagcaacaaaaggcttgcctctgagtgcacccgcatcatcctcatcttcaaggtcacgcatgttatcctcccgattacacccctccttcactcacaagctcaccaaaacgacgtcgtccgaactctcttccctcaaatcgagccttcactttccggcacccgctcccgtccgacgcatttccaggttaccattggaactgagcagcgtggagtcgatgatgccattgcacagtgcaattgcttcggcgcggttaacatcgagcttgtcaattgagtcccagagctggggattagtccctcaaggaatttcaatgcctttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003857 GO:0004165 GO:0004300 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008692 GO:0009056 GO:0009058 GO:0009062 GO:0009506 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010817 GO:0015631 GO:0016042 GO:0016053 GO:0016054 GO:0016491 GO:0016614 GO:0016616 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0016856 GO:0016860 GO:0016863 GO:0018812 GO:0019395 GO:0019752 GO:0022414 GO:0030054 GO:0030258 GO:0030312 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0055044 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072329 GO:0072330 GO:0090567 GO:0097159 GO:1901363 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01100 ko01110 ko01212 map00071 map00592 map01100 map01110 map01212

Pfam Domains

Protein Families

3HCDH 3HCDH_N ECH_1

Protein Analysis

425

Amino Acids

46.46

Weight (kDa)

9.43

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3HCDH_N	PF02737	10 - 104	8.4e-31	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH	PF00725	107 - 200	1.9e-22	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1070
AccB1I	GGYRCC	1 cut(s)	1111
AccBSI	CCGCTC	1 cut(s)	1118
AccI	GTMKAC	1 cut(s)	915
AccII	CGCG	1 cut(s)	1204
AciI	CCGC	3 cut(s)	987, 1116, 1204
AclWI	GGATC	2 cut(s)	171, 416
AcsI	RAATTY	3 cut(s)	494, 714, 1260
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	1067
AfaI	GTAC	2 cut(s)	225, 316
AfiI	CCNNNNNNNGG	5 cut(s)	268, 433, 451, 1239, 1240
AgsI	TTSAA	5 cut(s)	218, 527, 931, 1005, 1266
AjnI	CCWGG	2 cut(s)	679, 1136
AluBI	AGCT	4 cut(s)	476, 1054, 1218, 1239
AluI	AGCT	4 cut(s)	476, 1054, 1218, 1239
Alw21I	GWGCWC	1 cut(s)	985
Alw44I	GTGCAC	1 cut(s)	981
AlwI	GGATC	2 cut(s)	171, 416
AoxI	GGCC	2 cut(s)	424, 872
ApaLI	GTGCAC	1 cut(s)	981
ApeKI	GCWGC	2 cut(s)	788, 1158
ApoI	RAATTY	3 cut(s)	494, 714, 1260
ArsI	GACNNNNNNTTYG	2 cut(s)	534, 566
AspLEI	GCGC	2 cut(s)	362, 1204
AspS9I	GGNCC	2 cut(s)	437, 872
AsuC2I	CCSGG	1 cut(s)	839
AsuHPI	GGTGA	4 cut(s)	80, 522, 754, 1048
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	2 cut(s)	181, 985
BanI	GGYRCC	1 cut(s)	1111
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	985
BbvI	GCAGC	2 cut(s)	800, 1170
BccI	CCATC	1 cut(s)	943
BcgI	CGANNNNNNTGC	2 cut(s)	1179, 1213
BciT130I	CCWGG	2 cut(s)	681, 1138
BcnI	CCSGG	1 cut(s)	839
BfaI	CTAG	2 cut(s)	501, 657
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	2 cut(s)	789, 1159
BlsI	GCNGC	2 cut(s)	790, 1160
Bme1390I	CCNGG	3 cut(s)	681, 839, 1138
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	437, 872
BmiI	GGNNCC	2 cut(s)	438, 1113
BmrFI	CCNGG	3 cut(s)	681, 839, 1138
BmsI	GCATC	6 cut(s)	177, 195, 666, 815, 998, 1164
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	3 cut(s)	95, 881, 1239
BpuMI	CCSGG	1 cut(s)	839
BsaHI	GRCGYC	1 cut(s)	1067
BsaJI	CCNNGG	2 cut(s)	355, 838
Bsc4I	CCNNNNNNNGG	5 cut(s)	268, 433, 451, 1239, 1240
Bse3DI	GCAATG	2 cut(s)	801, 1178
BseBI	CCWGG	2 cut(s)	681, 1138
BseDI	CCNNGG	2 cut(s)	355, 838
BseGI	GGATG	3 cut(s)	116, 772, 992
BseLI	CCNNNNNNNGG	5 cut(s)	268, 433, 451, 1239, 1240
BseMI	GCAATG	2 cut(s)	801, 1178
BseMII	CTCAG	3 cut(s)	173, 968, 1145
BseRI	GAGGAG	1 cut(s)	665
BseSI	GKGCMC	2 cut(s)	181, 985
BseXI	GCAGC	2 cut(s)	800, 1170
BseYI	CCCAGC	1 cut(s)	1239
Bsh1236I	CGCG	1 cut(s)	1204
BshFI	GGCC	2 cut(s)	426, 874
BshNI	GGYRCC	1 cut(s)	1111
BsiHKAI	GWGCWC	1 cut(s)	985
BsiSI	CCGG	2 cut(s)	838, 1109
BslFI	GGGAC	2 cut(s)	1216, 1235
BslI	CCNNNNNNNGG	5 cut(s)	268, 433, 451, 1239, 1240
BsmFI	GGGAC	2 cut(s)	1216, 1235
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	426, 874
Bsp1286I	GDGCHC	2 cut(s)	181, 985
Bsp143I	GATC	5 cut(s)	155, 163, 408, 514, 625
BspACI	CCGC	3 cut(s)	987, 1116, 1204
BspANI	GGCC	2 cut(s)	426, 874
BspCNI	CTCAG	3 cut(s)	172, 969, 1146
BspFNI	CGCG	1 cut(s)	1204
BspLI	GGNNCC	2 cut(s)	438, 1113
BspPI	GGATC	2 cut(s)	171, 416
BspT107I	GGYRCC	1 cut(s)	1111
BsrBI	CCGCTC	1 cut(s)	1118
BsrDI	GCAATG	2 cut(s)	801, 1178
BssECI	CCNNGG	2 cut(s)	355, 838
BssMI	GATC	5 cut(s)	155, 163, 408, 514, 625
BssNAI	GTATAC	1 cut(s)	916
BssNI	GRCGYC	1 cut(s)	1067
BssT1I	CCWWGG	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	916
Bst2UI	CCWGG	2 cut(s)	681, 1138
Bst4CI	ACNGT	4 cut(s)	271, 314, 920, 1187
Bst6I	CTCTTC	2 cut(s)	216, 1087
BstACI	GRCGYC	1 cut(s)	1067
BstC8I	GCNNGC	3 cut(s)	463, 614, 971
BstDEI	CTNAG	5 cut(s)	159, 547, 876, 977, 1154
BstEII	GGTNACC	1 cut(s)	1140
BstF5I	GGATG	3 cut(s)	116, 772, 992
BstFNI	CGCG	1 cut(s)	1204
BstHHI	GCGC	2 cut(s)	362, 1204
BstKTI	GATC	5 cut(s)	158, 166, 411, 517, 628
BstMBI	GATC	5 cut(s)	155, 163, 408, 514, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstNI	CCWGG	2 cut(s)	681, 1138
BstNSI	RCATGY	2 cut(s)	756, 1018
BstPI	GGTNACC	1 cut(s)	1140
BstSCI	CCNGG	3 cut(s)	679, 837, 1136
BstSLI	GKGCMC	2 cut(s)	181, 985
BstUI	CGCG	1 cut(s)	1204
BstV1I	GCAGC	2 cut(s)	800, 1170
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BstZ17I	GTATAC	1 cut(s)	916
BsuRI	GGCC	2 cut(s)	426, 874
BtsCI	GGATG	3 cut(s)	116, 772, 992
BtsIMutI	CAGTG	1 cut(s)	1192
Cac8I	GCNNGC	3 cut(s)	463, 614, 971
CfoI	GCGC	2 cut(s)	362, 1204
Cfr13I	GGNCC	2 cut(s)	437, 872
CseI	GACGC	1 cut(s)	1137
Csp6I	GTAC	2 cut(s)	224, 315
CviAII	CATG	4 cut(s)	200, 753, 820, 1015
CviQI	GTAC	2 cut(s)	224, 315
DdeI	CTNAG	5 cut(s)	159, 547, 876, 977, 1154
DpnI	GATC	5 cut(s)	157, 165, 410, 516, 627
DpnII	GATC	5 cut(s)	155, 163, 408, 514, 625
Eam1104I	CTCTTC	2 cut(s)	216, 1087
EarI	CTCTTC	2 cut(s)	216, 1087
Eco130I	CCWWGG	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	1140
EcoO65I	GGTNACC	1 cut(s)	1140
EcoRII	CCWGG	2 cut(s)	679, 1136
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	4 cut(s)	203, 756, 823, 1018
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	2 cut(s)	1216, 1235
FatI	CATG	4 cut(s)	199, 752, 819, 1014
FauI	CCCGC	2 cut(s)	994, 1123
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	2 cut(s)	789, 1159
FokI	GGATG	3 cut(s)	103, 779, 979
Fsp4HI	GCNGC	2 cut(s)	789, 1159
FspBI	CTAG	2 cut(s)	501, 657
GlaI	GCGC	2 cut(s)	361, 1203
GluI	GCNGC	2 cut(s)	789, 1159
GsaI	CCCAGC	1 cut(s)	1243
GsuI	CTGGAG	1 cut(s)	740
HaeIII	GGCC	2 cut(s)	426, 874
HapII	CCGG	2 cut(s)	838, 1109
HgaI	GACGC	1 cut(s)	1137
HhaI	GCGC	2 cut(s)	362, 1204
Hin1I	GRCGYC	1 cut(s)	1067
Hin1II	CATG	4 cut(s)	203, 756, 823, 1018
Hin6I	GCGC	2 cut(s)	360, 1202
HinP1I	GCGC	2 cut(s)	360, 1202
HincII	GTYRAC	1 cut(s)	1209
HindII	GTYRAC	1 cut(s)	1209
HinfI	GANTC	3 cut(s)	653, 1166, 1229
HpaI	GTTAAC	1 cut(s)	1209
HpaII	CCGG	2 cut(s)	838, 1109
HphI	GGTGA	4 cut(s)	80, 522, 754, 1048
Hpy166II	GTNNAC	4 cut(s)	71, 916, 983, 1209
Hpy188I	TCNGA	3 cut(s)	978, 1075, 1127
Hpy8I	GTNNAC	4 cut(s)	71, 916, 983, 1209
Hpy99I	CGWCG	3 cut(s)	1069, 1072, 1131
HpyAV	CCTTC	5 cut(s)	99, 437, 764, 1051, 1109
HpyCH4III	ACNGT	4 cut(s)	271, 314, 920, 1187
HpyCH4IV	ACGT	1 cut(s)	1067
HpyCH4V	TGCA	6 cut(s)	99, 326, 806, 983, 1183, 1190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	5 cut(s)	159, 547, 876, 977, 1154
HpySE526I	ACGT	1 cut(s)	1067
Hsp92I	GRCGYC	1 cut(s)	1067
Hsp92II	CATG	4 cut(s)	203, 756, 823, 1018
HspAI	GCGC	2 cut(s)	360, 1202
KspAI	GTTAAC	1 cut(s)	1209
Kzo9I	GATC	5 cut(s)	155, 163, 408, 514, 625
LmnI	GCTCC	1 cut(s)	1123
Lsp1109I	GCAGC	2 cut(s)	800, 1170
LweI	GCATC	6 cut(s)	177, 195, 666, 815, 998, 1164
MaeI	CTAG	2 cut(s)	501, 657
MaeII	ACGT	1 cut(s)	1067
MaeIII	GTNAC	4 cut(s)	308, 700, 1008, 1140
MalI	GATC	5 cut(s)	157, 165, 410, 516, 627
MbiI	CCGCTC	1 cut(s)	1118
MboI	GATC	5 cut(s)	155, 163, 408, 514, 625
MboII	GAAGA	6 cut(s)	203, 247, 919, 962, 993, 1074
MfeI	CAATTG	2 cut(s)	1191, 1224
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	181, 985
MlyI	GAGTC	3 cut(s)	662, 1175, 1238
MmeI	TCCRAC	5 cut(s)	121, 253, 466, 469, 1150
MseI	TTAA	1 cut(s)	1208
MspI	CCGG	2 cut(s)	838, 1109
MspR9I	CCNGG	3 cut(s)	681, 839, 1138
MunI	CAATTG	2 cut(s)	1191, 1224
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	681, 1138
MvnI	CGCG	1 cut(s)	1204
MwoI	GCNNNNNNNGC	1 cut(s)	423
NciI	CCSGG	1 cut(s)	839
NdeII	GATC	5 cut(s)	155, 163, 408, 514, 625
NlaIII	CATG	4 cut(s)	203, 756, 823, 1018
NlaIV	GGNNCC	2 cut(s)	438, 1113
NmuCI	GTSAC	1 cut(s)	1008
NspI	RCATGY	2 cut(s)	756, 1018
PctI	GAATGC	1 cut(s)	338
PflFI	GACNNNGTC	1 cut(s)	1069
PkrI	GCNGC	2 cut(s)	790, 1160
PleI	GAGTC	3 cut(s)	661, 1174, 1237
PpsI	GAGTC	3 cut(s)	661, 1174, 1237
Psp6I	CCWGG	2 cut(s)	679, 1136
PspEI	GGTNACC	1 cut(s)	1140
PspFI	CCCAGC	1 cut(s)	1239
PspGI	CCWGG	2 cut(s)	679, 1136
PspN4I	GGNNCC	2 cut(s)	438, 1113
PspPI	GGNCC	2 cut(s)	437, 872
PsuI	RGATCY	1 cut(s)	155
PsyI	GACNNNGTC	1 cut(s)	1069
RsaI	GTAC	2 cut(s)	225, 316
RsaNI	GTAC	2 cut(s)	224, 315
SaqAI	TTAA	1 cut(s)	1208
SatI	GCNGC	2 cut(s)	789, 1159
Sau3AI	GATC	5 cut(s)	155, 163, 408, 514, 625
Sau96I	GGNCC	2 cut(s)	437, 872
SchI	GAGTC	3 cut(s)	662, 1175, 1238
ScrFI	CCNGG	3 cut(s)	681, 839, 1138
SduI	GDGCHC	2 cut(s)	181, 985
SfaNI	GCATC	6 cut(s)	177, 195, 666, 815, 998, 1164
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	3 cut(s)	74, 896, 1254
SmoI	CTYRAG	3 cut(s)	74, 896, 1254
SsiI	CCGC	3 cut(s)	987, 1116, 1204
SspMI	CTAG	2 cut(s)	501, 657
StyD4I	CCNGG	3 cut(s)	679, 837, 1136
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	4 cut(s)	271, 314, 920, 1187
TaiI	ACGT	1 cut(s)	1070
TaqI	TCGA	6 cut(s)	387, 540, 784, 1094, 1169, 1214
Tru1I	TTAA	1 cut(s)	1208
Tru9I	TTAA	1 cut(s)	1208
TscAI	CASTG	1 cut(s)	1192
TseFI	GTSAC	1 cut(s)	1008
TseI	GCWGC	2 cut(s)	788, 1158
Tsp45I	GTSAC	1 cut(s)	1008
TspDTI	ATGAA	3 cut(s)	27, 615, 783
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	1192
Tth111I	GACNNNGTC	1 cut(s)	1069
VneI	GTGCAC	1 cut(s)	981
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	3 cut(s)	494, 714, 1260
XbaI	TCTAGA	1 cut(s)	656
XceI	RCATGY	2 cut(s)	756, 1018
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1144
XmiI	GTMKAC	1 cut(s)	915
XspI	CTAG	2 cut(s)	501, 657
ZraI	GACGTC	1 cut(s)	1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.