Rmu_sc0001788.1_g000001
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001788.1
N/A
Physical Location & Seq
Reverse (-)
8265 .. 9227
963 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
atgggatttgaccctcagaaaacgagctttgtggaggccttgcatgcatggaaacgatgtcaagaggcttataggagctggaaacgacatggaaaccattgtgtatggttggttatgtcggagaagaaaataatgggaataatggatttcttagtcaacaagatggggtggcattcccagaagattgcaatatcccaatgttttgtgttactgcttggagaagagaatcatcccaacttcccaaggtgctcggttttgagagttttgatcttgaaaggattgatagaagagaagaagttgagtttggctactgttattattaagccagagaagtacttgttaaataggttttgtgaccagatatctcgaccaagtgcctcaattgtcgaaagtataccatgggaaagtggacgtccaggatgttttgtgaccagatatctcgaccaagtgcctcaattgtcgaaagtataccatgggaaagtggacgttcaggatgtgcgcaacaattctaggctgacagttttgaatctggaggtgctacttgaaaaaatgggaaggctccatgatttgaaagagccaaagaggtttcatcgtcatgaacaattaatgaggtattttatcggcgtaaggtatacatggcacaaaaaggtggaggtcggaggtcgagcgaggcctggtggcatgcgaacccagcccataccgatagactcaggagggaacacatacgtgaggcacgatctcgctttctctgataaggaaacgagtattgcctcagtgggtcaggcagagaggcaaagacctccttatgtacatgctcctccagaaatcgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

277

Amino Acids

31.99

Weight (kDa)

9.61

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 415
Acc16I TGCGCA 1 cut(s) 500
AccI GTMKAC 3 cut(s) 394, 468, 632
AcyI GRCGYC 1 cut(s) 412
AfaI GTAC 2 cut(s) 335, 810
AgsI TTSAA 4 cut(s) 274, 526, 545, 571
AjnI CCWGG 2 cut(s) 415, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AleI CACNNNNGTG 1 cut(s) 725
AluBI AGCT 2 cut(s) 27, 78
AluI AGCT 2 cut(s) 27, 78
Alw21I GWGCWC 1 cut(s) 251
AoxI GGCC 2 cut(s) 36, 671
AseI ATTAAT 1 cut(s) 605
AspLEI GCGC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 251
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 2 cut(s) 417, 675
BfaI CTAG 1 cut(s) 510
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 417, 675
BmiI GGNNCC 1 cut(s) 560
BmrFI CCNGG 2 cut(s) 417, 675
BpmI CTGGAG 2 cut(s) 551, 804
BsaAI YACGTR 1 cut(s) 727
BsaHI GRCGYC 1 cut(s) 412
BsaJI CCNNGG 3 cut(s) 242, 398, 472
BseBI CCWGG 2 cut(s) 417, 675
BseDI CCNNGG 3 cut(s) 242, 398, 472
BseGI GGATG 3 cut(s) 229, 425, 499
BseMII CTCAG 3 cut(s) 29, 723, 786
BseRI GAGGAG 1 cut(s) 807
BseYI CCCAGC 1 cut(s) 690
BshFI GGCC 2 cut(s) 38, 673
BsiHKAI GWGCWC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 2 cut(s) 38, 673
Bsp1286I GDGCHC 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 808
Bsp143I GATC 2 cut(s) 267, 736
Bsp19I CCATGG 2 cut(s) 398, 472
BspANI GGCC 2 cut(s) 38, 673
BspCNI CTCAG 3 cut(s) 28, 722, 785
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 808
BssECI CCNNGG 3 cut(s) 242, 398, 472
BssMI GATC 2 cut(s) 267, 736
BssNAI GTATAC 3 cut(s) 395, 469, 633
BssNI GRCGYC 1 cut(s) 412
BssT1I CCWWGG 3 cut(s) 242, 398, 472
Bst1107I GTATAC 3 cut(s) 395, 469, 633
Bst2UI CCWGG 2 cut(s) 417, 675
Bst4CI ACNGT 2 cut(s) 313, 520
Bst6I CTCTTC 2 cut(s) 216, 282
BstACI GRCGYC 1 cut(s) 412
BstAUI TGTACA 1 cut(s) 808
BstBAI YACGTR 1 cut(s) 727
BstC8I GCNNGC 2 cut(s) 45, 683
BstDEI CTNAG 4 cut(s) 15, 151, 709, 772
BstDSI CCRYGG 2 cut(s) 398, 472
BstF5I GGATG 3 cut(s) 229, 425, 499
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 2 cut(s) 270, 739
BstMBI GATC 2 cut(s) 267, 736
BstMWI GCNNNNNNNGC 2 cut(s) 44, 691
BstNI CCWGG 2 cut(s) 417, 675
BstNSI RCATGY 3 cut(s) 47, 685, 815
BstSCI CCNGG 2 cut(s) 415, 673
BstZ17I GTATAC 3 cut(s) 395, 469, 633
BsuRI GGCC 2 cut(s) 38, 673
BtgI CCRYGG 2 cut(s) 398, 472
BtsCI GGATG 3 cut(s) 229, 425, 499
BtsIMutI CAGTG 1 cut(s) 780
Cac8I GCNNGC 2 cut(s) 45, 683
CciI TCATGA 1 cut(s) 595
CfoI GCGC 1 cut(s) 501
Csp6I GTAC 2 cut(s) 334, 809
CviQI GTAC 2 cut(s) 334, 809
DdeI CTNAG 4 cut(s) 15, 151, 709, 772
DpnI GATC 2 cut(s) 269, 738
DpnII GATC 2 cut(s) 267, 736
Eam1104I CTCTTC 2 cut(s) 216, 282
EarI CTCTTC 2 cut(s) 216, 282
Eco130I CCWWGG 3 cut(s) 242, 398, 472
Eco147I AGGCCT 2 cut(s) 38, 673
Eco32I GATATC 2 cut(s) 363, 437
EcoRII CCWGG 2 cut(s) 415, 673
EcoRV GATATC 2 cut(s) 363, 437
EcoT14I CCWWGG 3 cut(s) 242, 398, 472
EcoT22I ATGCAT 1 cut(s) 49
ErhI CCWWGG 3 cut(s) 242, 398, 472
FalI AAGNNNNNCTT 2 cut(s) 787, 819
FblI GTMKAC 3 cut(s) 394, 468, 632
FokI GGATG 3 cut(s) 216, 432, 506
FspBI CTAG 1 cut(s) 510
FspI TGCGCA 1 cut(s) 500
GlaI GCGC 1 cut(s) 500
GsaI CCCAGC 1 cut(s) 694
GsuI CTGGAG 2 cut(s) 551, 804
HaeIII GGCC 2 cut(s) 38, 673
HhaI GCGC 1 cut(s) 501
Hin1I GRCGYC 1 cut(s) 412
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 3 cut(s) 226, 526, 707
Hpy166II GTNNAC 6 cut(s) 157, 395, 410, 469, 484, 633
Hpy188I TCNGA 4 cut(s) 18, 121, 659, 751
Hpy188III TCNNGA 9 cut(s) 62, 271, 366, 440, 491, 530, 596, 711, 821
Hpy8I GTNNAC 6 cut(s) 157, 395, 410, 469, 484, 633
HpyAV CCTTC 1 cut(s) 549
HpyCH4III ACNGT 2 cut(s) 313, 520
HpyCH4IV ACGT 3 cut(s) 412, 486, 726
HpyCH4V TGCA 3 cut(s) 43, 47, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 691
HpyF3I CTNAG 4 cut(s) 15, 151, 709, 772
HpySE526I ACGT 3 cut(s) 412, 486, 726
Hsp92I GRCGYC 1 cut(s) 412
HspAI GCGC 1 cut(s) 499
Kzo9I GATC 2 cut(s) 267, 736
LmnI GCTCC 3 cut(s) 75, 564, 820
MaeI CTAG 1 cut(s) 510
MaeII ACGT 3 cut(s) 412, 486, 726
MaeIII GTNAC 3 cut(s) 207, 353, 427
MalI GATC 2 cut(s) 269, 738
MboI GATC 2 cut(s) 267, 736
MboII GAAGA 5 cut(s) 136, 193, 233, 299, 304
MfeI CAATTG 2 cut(s) 381, 455
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 4 cut(s) 381, 455, 505, 602
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 2 cut(s) 99, 637
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 3 cut(s) 321, 341, 605
MslI CAYNNNNRTG 2 cut(s) 594, 725
MspR9I CCNGG 2 cut(s) 417, 675
MunI CAATTG 2 cut(s) 381, 455
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 2 cut(s) 417, 675
MwoI GCNNNNNNNGC 2 cut(s) 44, 691
NcoI CCATGG 2 cut(s) 398, 472
NdeII GATC 2 cut(s) 267, 736
NlaIV GGNNCC 1 cut(s) 560
NmuCI GTSAC 2 cut(s) 353, 427
NsbI TGCGCA 1 cut(s) 500
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 3 cut(s) 47, 685, 815
OliI CACNNNNGTG 1 cut(s) 725
PaeI GCATGC 2 cut(s) 47, 685
PagI TCATGA 1 cut(s) 595
PceI AGGCCT 2 cut(s) 38, 673
PcsI WCGNNNNNNNCGW 1 cut(s) 732
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 226, 526
PfoI TCCNGGA 1 cut(s) 415
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
Ppu21I YACGTR 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 605
Psp6I CCWGG 2 cut(s) 415, 673
PspFI CCCAGC 1 cut(s) 690
PspGI CCWGG 2 cut(s) 415, 673
PspN4I GGNNCC 1 cut(s) 560
RsaI GTAC 2 cut(s) 335, 810
RsaNI GTAC 2 cut(s) 334, 809
RseI CAYNNNNRTG 2 cut(s) 594, 725
SaqAI TTAA 3 cut(s) 321, 341, 605
Sau3AI GATC 2 cut(s) 267, 736
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 2 cut(s) 417, 675
SduI GDGCHC 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 594, 725
SphI GCATGC 2 cut(s) 47, 685
Sse9I AATT 4 cut(s) 381, 455, 505, 602
SseBI AGGCCT 2 cut(s) 38, 673
SspMI CTAG 1 cut(s) 510
StuI AGGCCT 2 cut(s) 38, 673
StyD4I CCNGG 2 cut(s) 415, 673
StyI CCWWGG 3 cut(s) 242, 398, 472
TaaI ACNGT 2 cut(s) 313, 520
TaiI ACGT 3 cut(s) 415, 489, 729
TaqI TCGA 5 cut(s) 367, 387, 441, 461, 664
TasI AATT 4 cut(s) 381, 455, 505, 602
TatI WGTACW 2 cut(s) 333, 808
TfiI GAWTC 2 cut(s) 226, 526
Tru1I TTAA 3 cut(s) 321, 341, 605
Tru9I TTAA 3 cut(s) 321, 341, 605
TscAI CASTG 1 cut(s) 780
TseFI GTSAC 2 cut(s) 353, 427
Tsp45I GTSAC 2 cut(s) 353, 427
TspDTI ATGAA 2 cut(s) 578, 612
TspRI CASTG 1 cut(s) 780
VspI ATTAAT 1 cut(s) 605
XceI RCATGY 3 cut(s) 47, 685, 815
XmiI GTMKAC 3 cut(s) 394, 468, 632
XspI CTAG 1 cut(s) 510
ZraI GACGTC 1 cut(s) 413
ZrmI AGTACT 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.