Rmu_sc0001791.1_g000009

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001791.1
N/A
Physical Location & Seq
Reverse (-)
45235 .. 47311
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001791.1_g000009.1.cds

Sequence Viewer

Length: 690 bp
atggctgaggcactagttaacgttctcctagagcgtttgactatgattgccctagacaaggtcggacaagagctaaaactggtggttggggttaagaaagaagtcaagagcctcacctgcaatctcgaagctattcaagctgttctgcaggatgcaaagcagaggcaagtgacggaagccacacaacctgcacagcagcctgcatccttcaccaccggcctgcatccctcctccggcaacttgcatcccagcccactgcaacacacgggcctgcagcacaccaccggcccccaacctagaccaggccaccaccagcacctgcgcgcacaacccagctcctccatcaccaccttgcagcagcacatgcaaacccgcattgctaagcaaagccccgccccgcccatcgtcgccagcagcccaagccttgaacagcccaagccgacagcccaagccgccagcagcccaagccgcgaacaacccagcatcccatatctccgacttgcagcggcaccaccggagaactgcagtagcagaagcgcctccgatttgcagaagcctcccaccggcgaactgcagcagagcctcccaccggcctccagcctagaccaggccaccaccgacctgcttcagcctcgtcttgcgcccatctgcttcacccacctgctcccacagtcgatcggtgtagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

229

Amino Acids

24.48

Weight (kDa)

8.51

Isoelectric Point (pI)

70.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 125, 327, 669
Acc36I ACCTGC 5 cut(s) 125, 196, 327, 630, 669
AccB1I GGYRCC 1 cut(s) 508
AccII CGCG 2 cut(s) 324, 471
AciI CCGC 6 cut(s) 373, 393, 398, 453, 469, 506
AclI AACGTT 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 611
AfiI CCNNNNNNNGG 6 cut(s) 58, 233, 302, 563, 589, 607
AgsI TTSAA 2 cut(s) 137, 428
AhlI ACTAGT 1 cut(s) 13
AjnI CCWGG 2 cut(s) 301, 606
AluBI AGCT 4 cut(s) 73, 131, 140, 336
AluI AGCT 4 cut(s) 73, 131, 140, 336
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 6 cut(s) 217, 268, 286, 304, 591, 609
ApeKI GCWGC 8 cut(s) 196, 274, 355, 358, 414, 459, 503, 574
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 4 cut(s) 324, 326, 539, 643
AspS9I GGNCC 2 cut(s) 268, 287
AsuHPI GGTGA 4 cut(s) 106, 202, 337, 646
BanI GGYRCC 1 cut(s) 508
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 8 cut(s) 208, 286, 367, 370, 426, 471, 515, 586
BccI CCATC 3 cut(s) 350, 410, 653
BciT130I CCWGG 2 cut(s) 303, 608
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 5 cut(s) 14, 29, 53, 297, 602
BfmI CTRYAG 4 cut(s) 146, 272, 523, 572
BfoI RGCGCY 1 cut(s) 540
BfuAI ACCTGC 5 cut(s) 125, 196, 327, 630, 669
BlpI GCTNAGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 303, 608
BmgT120I GGNCC 2 cut(s) 268, 287
BmiI GGNNCC 2 cut(s) 289, 510
BmrFI CCNGG 2 cut(s) 303, 608
BmsI GCATC 5 cut(s) 142, 212, 232, 253, 492
BpmI CTGGAG 1 cut(s) 580
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 233, 302, 563, 589, 607
Bse118I RCCGGY 4 cut(s) 215, 284, 563, 589
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 2 cut(s) 303, 608
BseGI GGATG 5 cut(s) 157, 203, 223, 244, 483
BseLI CCNNNNNNNGG 6 cut(s) 58, 233, 302, 563, 589, 607
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 84
BsePI GCGCGC 1 cut(s) 322
BseRI GAGGAG 2 cut(s) 220, 328
BseXI GCAGC 8 cut(s) 208, 286, 367, 370, 426, 471, 515, 586
BseYI CCCAGC 3 cut(s) 248, 332, 479
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 324, 471
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 6 cut(s) 219, 270, 288, 306, 593, 611
BshNI GGYRCC 1 cut(s) 508
BsiEI CGRYCG 1 cut(s) 678
BsiSI CCGG 6 cut(s) 216, 234, 285, 515, 564, 590
BslI CCNNNNNNNGG 6 cut(s) 58, 233, 302, 563, 589, 607
BsnI GGCC 6 cut(s) 219, 270, 288, 306, 593, 611
Bsp143I GATC 1 cut(s) 675
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 6 cut(s) 373, 393, 398, 453, 469, 506
BspANI GGCC 6 cut(s) 219, 270, 288, 306, 593, 611
BspFNI CGCG 2 cut(s) 324, 471
BspLI GGNNCC 2 cut(s) 289, 510
BspMAI CTGCAG 4 cut(s) 150, 276, 527, 576
BspMI ACCTGC 5 cut(s) 125, 196, 327, 630, 669
BspT107I GGYRCC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 4 cut(s) 215, 284, 563, 589
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 4 cut(s) 215, 284, 563, 589
BssHII GCGCGC 1 cut(s) 322
BssMI GATC 1 cut(s) 675
Bst2UI CCWGG 2 cut(s) 303, 608
Bst4CI ACNGT 1 cut(s) 672
BstAPI GCANNNNNTGC 1 cut(s) 364
BstC8I GCNNGC 6 cut(s) 201, 221, 272, 324, 412, 457
BstDEI CTNAG 2 cut(s) 6, 381
BstENI CCTNNNNNAGG 3 cut(s) 56, 300, 605
BstF5I GGATG 5 cut(s) 157, 203, 223, 244, 483
BstFNI CGCG 2 cut(s) 324, 471
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 4 cut(s) 324, 326, 539, 643
BstKTI GATC 1 cut(s) 678
BstMBI GATC 1 cut(s) 675
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 7 cut(s) 117, 137, 364, 420, 452, 465, 468
BstNI CCWGG 2 cut(s) 303, 608
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 301, 606
BstSFI CTRYAG 4 cut(s) 146, 272, 523, 572
BstUI CGCG 2 cut(s) 324, 471
BstV1I GCAGC 8 cut(s) 208, 286, 367, 370, 426, 471, 515, 586
BsuRI GGCC 6 cut(s) 219, 270, 288, 306, 593, 611
BtsCI GGATG 5 cut(s) 157, 203, 223, 244, 483
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 254
BveI ACCTGC 5 cut(s) 125, 196, 327, 630, 669
Cac8I GCNNGC 6 cut(s) 201, 221, 272, 324, 412, 457
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 4 cut(s) 324, 326, 539, 643
Cfr10I RCCGGY 4 cut(s) 215, 284, 563, 589
Cfr13I GGNCC 2 cut(s) 268, 287
CviAII CATG 1 cut(s) 364
DdeI CTNAG 2 cut(s) 6, 381
DpnI GATC 1 cut(s) 677
DpnII GATC 1 cut(s) 675
Eco57I CTGAAG 1 cut(s) 611
EcoNI CCTNNNNNAGG 3 cut(s) 56, 300, 605
EcoRII CCWGG 2 cut(s) 301, 606
FaeI CATG 1 cut(s) 367
FaiI YATR 3 cut(s) 44, 365, 490
FatI CATG 1 cut(s) 363
FauI CCCGC 3 cut(s) 380, 400, 405
FokI GGATG 5 cut(s) 164, 190, 210, 231, 470
FspBI CTAG 5 cut(s) 14, 29, 53, 297, 602
GlaI GCGC 4 cut(s) 323, 325, 538, 642
GsaI CCCAGC 3 cut(s) 252, 336, 483
GsuI CTGGAG 1 cut(s) 580
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 6 cut(s) 219, 270, 288, 306, 593, 611
HapII CCGG 6 cut(s) 216, 234, 285, 515, 564, 590
HhaI GCGC 4 cut(s) 324, 326, 539, 643
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 4 cut(s) 322, 324, 537, 641
HinP1I GCGC 4 cut(s) 322, 324, 537, 641
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 6 cut(s) 216, 234, 285, 515, 564, 590
HphI GGTGA 4 cut(s) 106, 202, 337, 646
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 65, 497, 544
Hpy188III TCNNGA 2 cut(s) 106, 125
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 7 cut(s) 117, 137, 364, 420, 452, 465, 468
HpyF3I CTNAG 2 cut(s) 6, 381
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 4 cut(s) 322, 324, 537, 641
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 675
LmnI GCTCC 2 cut(s) 341, 669
Lsp1109I GCAGC 8 cut(s) 208, 286, 367, 370, 426, 471, 515, 586
LweI GCATC 5 cut(s) 142, 212, 232, 253, 492
MaeI CTAG 5 cut(s) 14, 29, 53, 297, 602
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 677
MboI GATC 1 cut(s) 675
MmeI TCCRAC 2 cut(s) 43, 520
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 18, 93
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 6 cut(s) 216, 234, 285, 515, 564, 590
MspR9I CCNGG 2 cut(s) 303, 608
MvaI CCWGG 2 cut(s) 303, 608
MvnI CGCG 2 cut(s) 324, 471
MwoI GCNNNNNNNGC 7 cut(s) 117, 137, 364, 420, 452, 465, 468
NdeII GATC 1 cut(s) 675
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 2 cut(s) 289, 510
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 367
PaqCI CACCTGC 3 cut(s) 125, 327, 669
PauI GCGCGC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 132
PflFI GACNNNGTC 1 cut(s) 59
Ple19I CGATCG 1 cut(s) 678
Psp1406I AACGTT 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 301, 606
PspFI CCCAGC 3 cut(s) 248, 332, 479
PspGI CCWGG 2 cut(s) 301, 606
PspN4I GGNNCC 2 cut(s) 289, 510
PspPI GGNCC 2 cut(s) 268, 287
PstI CTGCAG 4 cut(s) 150, 276, 527, 576
PstNI CAGNNNCTG 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 59
PteI GCGCGC 1 cut(s) 322
PvuI CGATCG 1 cut(s) 678
SaqAI TTAA 2 cut(s) 18, 93
Sau3AI GATC 1 cut(s) 675
Sau96I GGNCC 2 cut(s) 268, 287
ScrFI CCNGG 2 cut(s) 303, 608
SfaNI GCATC 5 cut(s) 142, 212, 232, 253, 492
SfcI CTRYAG 4 cut(s) 146, 272, 523, 572
SgrAI CRCCGGYG 1 cut(s) 563
SpeI ACTAGT 1 cut(s) 13
SsiI CCGC 6 cut(s) 373, 393, 398, 453, 469, 506
SspMI CTAG 5 cut(s) 14, 29, 53, 297, 602
StyD4I CCNGG 2 cut(s) 301, 606
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 126, 674
TauI GCSGC 3 cut(s) 455, 471, 509
Tru1I TTAA 2 cut(s) 18, 93
Tru9I TTAA 2 cut(s) 18, 93
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 8 cut(s) 196, 274, 355, 358, 414, 459, 503, 574
Tsp45I GTSAC 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 261
Tth111I GACNNNGTC 1 cut(s) 59
XagI CCTNNNNNAGG 3 cut(s) 56, 300, 605
XceI RCATGY 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 5 cut(s) 14, 29, 53, 297, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.