Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001793.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

166442 .. 167874

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ctgtgctcggcgactttacgtttatcgggattcgtgctgagagcatcttggagtataaccgcgaacccccatttcttcaagcttaaacctttcaaacctcacaagctgaacccactcagagcttccggcgaagatagtgggagcattgaagaacctaagaagcccggtcgccgtggcaggaaaaagaccccaacttatgcttcaacttcaccatcgaagaaaacccagtgctccaaaaaagcccaggttgaaaatggcccgatagaactagaacccgaatcttcagatccggaactcatagattacgacgacggcatcgatctcctgtacgattacctgcgcttggtctgctacttcaaggcagcccagaaagagttcgtcccgaaggcctgggtcgctggagacctgggtcgagcgtcagtaacagtgagagagaggccatctgggtcgccggaagtcgtcgacccagcagagtccagtgacagagagatgccgagagagagagagacgtcgtctgagtttgagaagagagactggatggatatatatctaacccgaactttaagacattggaaacctatttccaatagacatagaaaccattaccaagtagaattatgtaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaggaggaggaggaggagaagaagaaggaggaggaggaggaggagaaggagaagaagaagaagaagaagaagaagaagaaggagaagaggaagaagaagaaccaatttcacagagttgaaatttatattaatcacttattcaacaccgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

274

Amino Acids

32.3

Weight (kDa)

9.8

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	792
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	8 cut(s)	79, 94, 149, 204, 251, 358, 791, 814
AjnI	CCWGG	3 cut(s)	243, 389, 405
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	3 cut(s)	82, 106, 122
AluI	AGCT	3 cut(s)	82, 106, 122
Alw21I	GWGCWC	2 cut(s)	8, 233
Alw26I	GTCTC	3 cut(s)	396, 500, 525
AlwI	GGATC	1 cut(s)	281
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	3 cut(s)	256, 387, 437
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	792
AseI	ATTAAT	1 cut(s)	801
Asp700I	GAANNNNTTC	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	8, 233
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	3 cut(s)	220, 448, 532
BceAI	ACGGC	2 cut(s)	156, 328
BciT130I	CCWGG	3 cut(s)	245, 391, 407
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	3 cut(s)	396, 500, 525
BfaI	CTAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	4 cut(s)	165, 245, 391, 407
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	4 cut(s)	165, 245, 391, 407
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	53, 324, 480
BmuI	ACTGGG	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	172, 243, 390, 406
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	3 cut(s)	226, 477, 539
Bse8I	GATNNNNATC	1 cut(s)	546
BseAI	TCCGGA	1 cut(s)	289
BseBI	CCWGG	3 cut(s)	245, 391, 407
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	4 cut(s)	172, 243, 390, 406
BseGI	GGATG	1 cut(s)	543
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	3 cut(s)	29, 130, 507
BseNI	ACTGG	3 cut(s)	226, 477, 539
BseRI	GAGGAG	9 cut(s)	692, 695, 698, 701, 716, 719, 722, 725, 728
BseXI	GCAGC	1 cut(s)	374
BseYI	CCCAGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	258, 389, 439
BshVI	ATCGAT	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	8, 233
BsiSI	CCGG	4 cut(s)	126, 165, 290, 452
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	3 cut(s)	396, 500, 525
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	258, 389, 439
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	8, 233
Bsp13I	TCCGGA	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	286, 319
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	3 cut(s)	258, 389, 439
BspCNI	CTCAG	3 cut(s)	30, 129, 508
BspDI	ATCGAT	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	62
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	226, 477, 539
BssECI	CCNNGG	4 cut(s)	172, 243, 390, 406
BssMI	GATC	2 cut(s)	286, 319
BssNI	GRCGYC	1 cut(s)	509
Bst2UI	CCWGG	3 cut(s)	245, 391, 407
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	2 cut(s)	521, 752
BstACI	GRCGYC	1 cut(s)	509
BstDEI	CTNAG	4 cut(s)	38, 116, 156, 516
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	543
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	2 cut(s)	289, 322
BstMAI	GTCTC	3 cut(s)	396, 500, 525
BstMBI	GATC	2 cut(s)	286, 319
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 395
BstNI	CCWGG	3 cut(s)	245, 391, 407
BstPAI	GACNNNNGTC	1 cut(s)	408
BstSCI	CCNGG	4 cut(s)	163, 243, 389, 405
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	258, 389, 439
BsuTUI	ATCGAT	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	543
BtsIMutI	CAGTG	3 cut(s)	233, 432, 484
BveI	ACCTGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	257
ClaI	ATCGAT	1 cut(s)	318
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	328
CviJI	RGCY	9 cut(s)	82, 106, 122, 163, 242, 258, 365, 389, 439
CviKI_1	RGCY	9 cut(s)	82, 106, 122, 163, 242, 258, 365, 389, 439
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	38, 116, 156, 516
DpnI	GATC	2 cut(s)	288, 321
DpnII	GATC	2 cut(s)	286, 319
Eam1104I	CTCTTC	2 cut(s)	521, 752
EarI	CTCTTC	2 cut(s)	521, 752
Eco147I	AGGCCT	1 cut(s)	389
Eco31I	GGTCTC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	3 cut(s)	243, 389, 405
Esp3I	CGTCTC	1 cut(s)	500
FaiI	YATR	8 cut(s)	56, 198, 299, 545, 547, 594, 619, 798
FaqI	GGGAC	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	550
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	363
GsaI	CCCAGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	258, 389, 439
HapII	CCGG	4 cut(s)	126, 165, 290, 452
HgaI	GACGC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	509
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	30, 278, 473
HpaII	CCGG	4 cut(s)	126, 165, 290, 452
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	119, 286, 517
Hpy188III	TCNNGA	3 cut(s)	27, 290, 382
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	4 cut(s)	311, 314, 464, 514
HpyAV	CCTTC	5 cut(s)	379, 667, 691, 712, 745
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	2 cut(s)	19, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 395
HpyF3I	CTNAG	4 cut(s)	38, 116, 156, 516
HpySE526I	ACGT	2 cut(s)	19, 509
Hsp92I	GRCGYC	1 cut(s)	509
HspAI	GCGC	1 cut(s)	340
Kpn2I	TCCGGA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	286, 319
LmnI	GCTCC	2 cut(s)	141, 236
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	3 cut(s)	53, 324, 480
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	2 cut(s)	19, 509
MaeIII	GTNAC	2 cut(s)	421, 479
MalI	GATC	2 cut(s)	288, 321
MboI	GATC	2 cut(s)	286, 319
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	8, 233
MluCI	AATT	3 cut(s)	614, 776, 792
MlyI	GAGTC	1 cut(s)	482
MroI	TCCGGA	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	3 cut(s)	84, 563, 801
MspI	CCGG	4 cut(s)	126, 165, 290, 452
MspR9I	CCNGG	4 cut(s)	165, 245, 391, 407
MvaI	CCWGG	3 cut(s)	245, 391, 407
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	348, 395
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	286, 319
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	479
PceI	AGGCCT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	30, 278
PflFI	GACNNNGTC	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PshAI	GACNNNNGTC	1 cut(s)	408
PshBI	ATTAAT	1 cut(s)	801
Psp6I	CCWGG	3 cut(s)	243, 389, 405
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	3 cut(s)	243, 389, 405
PspPI	GGNCC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	511
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SalI	GTCGAC	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	84, 563, 801
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	2 cut(s)	286, 319
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	4 cut(s)	165, 245, 391, 407
SduI	GDGCHC	2 cut(s)	8, 233
SfaNI	GCATC	3 cut(s)	53, 324, 480
Sse9I	AATT	3 cut(s)	614, 776, 792
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	269
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	4 cut(s)	163, 243, 389, 405
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	2 cut(s)	22, 512
TaqI	TCGA	4 cut(s)	215, 318, 412, 462
TasI	AATT	3 cut(s)	614, 776, 792
TfiI	GAWTC	2 cut(s)	30, 278
Tru1I	TTAA	3 cut(s)	84, 563, 801
Tru9I	TTAA	3 cut(s)	84, 563, 801
TscAI	CASTG	3 cut(s)	233, 432, 484
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	479
TspRI	CASTG	3 cut(s)	233, 432, 484
Tth111I	GACNNNGTC	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	801
XapI	RAATTY	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.