Rmu_sc0001817.1_g000007

HEAT repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001817.1
N/A
Physical Location & Seq
Reverse (-)
43493 .. 43840
348 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
atggcattgtcaacattagtgccttcaactgcgagctcaatttctttgcttgctaaaagttcaatagctggtttacagatctggtctttacatggacttctgttaaccacagaagctgctggcttgtcctatgtatctcaagttcaggcaacacttggccttgctttggacattcttttgtctgaggagaatggttggatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

6.93

Weight (kDa)

4.4

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 2 cut(s) 27, 63
AluBI AGCT 3 cut(s) 36, 68, 116
AluI AGCT 3 cut(s) 36, 68, 116
Alw21I GWGCWC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 103
BglII AGATCT 1 cut(s) 78
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 78
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 175
BssMI GATC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 34, 51, 121
BstDEI CTNAG 1 cut(s) 183
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 1 cut(s) 159
Cac8I GCNNGC 3 cut(s) 34, 51, 121
CaiI CAGNNNCTG 1 cut(s) 116
CviAII CATG 1 cut(s) 92
CviJI RGCY 5 cut(s) 36, 68, 116, 123, 159
CviKI_1 RGCY 5 cut(s) 36, 68, 116, 123, 159
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 1 cut(s) 95
FaiI YATR 2 cut(s) 93, 132
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 2 cut(s) 12, 105
HindII GTYRAC 2 cut(s) 12, 105
HpaI GTTAAC 1 cut(s) 105
Hpy166II GTNNAC 3 cut(s) 12, 74, 105
Hpy188I TCNGA 1 cut(s) 184
Hpy8I GTNNAC 3 cut(s) 12, 74, 105
HpyAV CCTTC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 95
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 54, 67, 105, 131
Lsp1109I GCAGC 1 cut(s) 103
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 1 cut(s) 178
MseI TTAA 1 cut(s) 104
NdeII GATC 1 cut(s) 78
NlaIII CATG 1 cut(s) 95
PkrI GCNGC 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 38
PsrI GAACNNNNNNTAC 2 cut(s) 126, 158
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 78
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 78
SduI GDGCHC 1 cut(s) 38
SetI ASST 3 cut(s) 38, 70, 118
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 1 cut(s) 39
SstI GAGCTC 1 cut(s) 38
TasI AATT 1 cut(s) 39
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.