Rmu_sc0001849.1_g000048

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001849.1
N/A
Physical Location & Seq
Forward (+)
173277 .. 173990
714 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
atgtcaaaggaaccaagactcgacttttccatgcttgactcaacaggcttggattaccatagctgggtaaccgatgttgagaaccacctcacttcaaagggaatactacccataatccaggcacctaacccggatctcgtattagagtacatgtcaatcaaagatgcaagagagctatgggtagtgctagaagagcactttggtaatgtccaaaattccttcctccctgacttgaaagttcaatggaacaatctgtgcttcgctgacttcaagtccgttgctgaatataattcagaagctcttcgcctacaatccatgttgagattttgtggacaacctgtcacagaccaagagctaattgagaaaactatctccaacttccccgtttcagcaattgtggtctcaaagcaatatcgtaccgaggtcaatgctgaacggatcacgaggtttcatcaacttatcaatataatgtctgtagttgagaaacacgataacatactcgtgaggaattataattcaaggcccaatagaactaagaacgttcatgaggcgaattataatgcacccaaaggaaggcgcaaggagccgaaccctaagaataagagacatgagggacgtatgggcccatataaccgcccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

213

Amino Acids

24.77

Weight (kDa)

8.48

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 513, 558
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 1 cut(s) 634
AclI AACGTT 1 cut(s) 540
AclWI GGATC 2 cut(s) 141, 446
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 2 cut(s) 149, 418
AfiI CCNNNNNNNGG 2 cut(s) 64, 573
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 5 cut(s) 96, 235, 242, 271, 519
AhdI GACNNNNNGTC 2 cut(s) 271, 338
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 4 cut(s) 63, 175, 299, 355
AluI AGCT 4 cut(s) 63, 175, 299, 355
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 406, 598
AlwI GGATC 2 cut(s) 141, 446
AoxI GGCC 2 cut(s) 521, 622
ApaI GGGCCC 1 cut(s) 626
ApoI RAATTY 1 cut(s) 214
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 3 cut(s) 522, 622, 623
AsuC2I CCSGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 626
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 626
BauI CACGAG 2 cut(s) 442, 500
Bbv12I GWGCWC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 406, 598
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 474
Bme1390I CCNGG 2 cut(s) 119, 131
BmeRI GACNNNNNGTC 2 cut(s) 271, 338
BmgT120I GGNCC 3 cut(s) 522, 622, 623
BmiI GGNNCC 4 cut(s) 12, 123, 585, 624
BmrFI CCNGG 2 cut(s) 119, 131
BmsI GCATC 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 420
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 573
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 420
BseLI CCNNNNNNNGG 2 cut(s) 64, 573
BseSI GKGCMC 1 cut(s) 626
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 2 cut(s) 523, 624
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 2 cut(s) 64, 573
BsmAI GTCTC 2 cut(s) 406, 598
BsmFI GGGAC 1 cut(s) 627
BsnI GGCC 2 cut(s) 523, 624
Bso31I GGTCTC 1 cut(s) 406
Bsp120I GGGCCC 1 cut(s) 622
Bsp1286I GDGCHC 2 cut(s) 198, 626
Bsp143I GATC 2 cut(s) 133, 438
BspACI CCGC 1 cut(s) 634
BspANI GGCC 2 cut(s) 523, 624
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 4 cut(s) 12, 123, 585, 624
BspPI GGATC 2 cut(s) 141, 446
BspQI GCTCTTC 2 cut(s) 186, 306
BspT107I GGYRCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 2 cut(s) 133, 438
BssSI CACGAG 2 cut(s) 442, 500
Bst2BI CACGAG 2 cut(s) 442, 500
Bst2UI CCWGG 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 186, 306
BstDEI CTNAG 2 cut(s) 534, 594
BstEII GGTNACC 1 cut(s) 67
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 2 cut(s) 136, 441
BstMAI GTCTC 2 cut(s) 406, 598
BstMBI GATC 2 cut(s) 133, 438
BstMWI GCNNNNNNNGC 2 cut(s) 193, 583
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 154
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BstSFI CTRYAG 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 626
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 523, 624
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 3 cut(s) 522, 622, 623
Csp6I GTAC 2 cut(s) 148, 417
CviAII CATG 5 cut(s) 31, 151, 316, 545, 608
CviJI RGCY 8 cut(s) 48, 63, 175, 299, 355, 523, 586, 624
CviKI_1 RGCY 8 cut(s) 48, 63, 175, 299, 355, 523, 586, 624
CviQI GTAC 2 cut(s) 148, 417
DdeI CTNAG 2 cut(s) 534, 594
DpnI GATC 2 cut(s) 135, 440
DpnII GATC 2 cut(s) 133, 438
DriI GACNNNNNGTC 2 cut(s) 271, 338
Eam1104I CTCTTC 2 cut(s) 186, 306
Eam1105I GACNNNNNGTC 2 cut(s) 271, 338
EarI CTCTTC 2 cut(s) 186, 306
Eco24I GRGCYC 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 406
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 626
FaeI CATG 5 cut(s) 34, 154, 319, 548, 611
FaqI GGGAC 1 cut(s) 627
FatI CATG 5 cut(s) 30, 150, 315, 544, 607
FriOI GRGCYC 1 cut(s) 626
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 578
GsaI CCCAGC 1 cut(s) 67
HaeIII GGCC 2 cut(s) 523, 624
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 579
Hin1II CATG 5 cut(s) 34, 154, 319, 548, 611
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HinfI GANTC 2 cut(s) 18, 38
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 3 cut(s) 442, 502, 545
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 229, 567
HpyCH4IV ACGT 2 cut(s) 540, 616
HpyCH4V TGCA 2 cut(s) 167, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 583
HpyF3I CTNAG 2 cut(s) 534, 594
HpySE526I ACGT 2 cut(s) 540, 616
Hsp92II CATG 5 cut(s) 34, 154, 319, 548, 611
HspAI GCGC 1 cut(s) 577
Kzo9I GATC 2 cut(s) 133, 438
LguI GCTCTTC 2 cut(s) 186, 306
LmnI GCTCC 1 cut(s) 583
LpnPI CCDG 7 cut(s) 30, 49, 104, 131, 144, 240, 351
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 188
MaeII ACGT 2 cut(s) 540, 616
MaeIII GTNAC 2 cut(s) 67, 340
MalI GATC 2 cut(s) 135, 440
MboI GATC 2 cut(s) 133, 438
MboII GAAGA 2 cut(s) 203, 293
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 198, 626
MluCI AATT 7 cut(s) 214, 289, 357, 393, 508, 514, 553
MlyI GAGTC 2 cut(s) 12, 32
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 7 cut(s) 98, 233, 415, 438, 498, 541, 604
MroXI GAANNNNTTC 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 119, 131
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 193, 583
NciI CCSGG 1 cut(s) 131
NdeII GATC 2 cut(s) 133, 438
NlaIII CATG 5 cut(s) 34, 154, 319, 548, 611
NlaIV GGNNCC 4 cut(s) 12, 123, 585, 624
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 154
PagI TCATGA 1 cut(s) 544
PciI ACATGT 1 cut(s) 150
PciSI GCTCTTC 2 cut(s) 186, 306
PdmI GAANNNNTTC 1 cut(s) 300
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
PscI ACATGT 1 cut(s) 150
PsiI TTATAA 2 cut(s) 513, 558
Psp1406I AACGTT 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 4 cut(s) 12, 123, 585, 624
PspOMI GGGCCC 1 cut(s) 622
PspPI GGNCC 3 cut(s) 522, 622, 623
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 2 cut(s) 149, 418
RsaNI GTAC 2 cut(s) 148, 417
RseI CAYNNNNRTG 1 cut(s) 500
SapI GCTCTTC 2 cut(s) 186, 306
Sau3AI GATC 2 cut(s) 133, 438
Sau96I GGNCC 3 cut(s) 522, 622, 623
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SduI GDGCHC 2 cut(s) 198, 626
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 500
Sse9I AATT 7 cut(s) 214, 289, 357, 393, 508, 514, 553
SsiI CCGC 1 cut(s) 634
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 117, 129
TaiI ACGT 2 cut(s) 543, 619
TaqI TCGA 1 cut(s) 21
TasI AATT 7 cut(s) 214, 289, 357, 393, 508, 514, 553
TatI WGTACW 1 cut(s) 147
TseFI GTSAC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 440, 533
TspGWI ACGGA 2 cut(s) 265, 451
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.