Rmu_sc0001849.1_g000085

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001849.1
N/A
Physical Location & Seq
Reverse (-)
324537 .. 325034
498 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
atgcttgactcaacaggctcggattaccaaagttgggtaaccgatgttgagaaccacctcacttcaaaggaaatattacccataatccaagcacctaacccggatcttgtgttcgtgcgaatacctacaaagaatgctcaagtagttatcttgatgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagagttttggcaatgtccaatattccctcctccctgacttgaaggttcaatggaacaatctacgctttgctgatttcaagtctgttgctaaatataattcagaagctctttgcctacagtccatgttgaggttttgtggacaacttgtcacagagcaagagctaattgagaaaactctctccaccttccctgtttcagccattgtggtatcaaagcaataccgcactgaagtcaatgttggacggatcacgaggtttcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

165

Amino Acids

19.07

Weight (kDa)

6.83

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 457
AclWI GGATC 2 cut(s) 111, 488
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 160
AfeI AGCGCT 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 34, 363
AgsI TTSAA 4 cut(s) 66, 277, 284, 313
AhdI GACNNNNNGTC 1 cut(s) 380
AjuI GAANNNNNNNTTGG 4 cut(s) 225, 257, 456, 488
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 3 cut(s) 217, 341, 397
AluI AGCT 3 cut(s) 217, 341, 397
AlwI GGATC 2 cut(s) 111, 488
Aor51HI AGCGCT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 101
BauI CACGAG 1 cut(s) 484
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 101
BmeRI GACNNNNNGTC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 144, 196
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 363
Bse3DI GCAATG 1 cut(s) 253
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 34, 363
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 34, 363
BsmI GAATGC 1 cut(s) 139
Bsp143I GATC 3 cut(s) 103, 198, 480
BspACI CCGC 1 cut(s) 457
BspCNI CTCAG 1 cut(s) 192
BspPI GGATC 2 cut(s) 111, 488
BsrDI GCAATG 1 cut(s) 253
BssMI GATC 3 cut(s) 103, 198, 480
BssNI GRCGYC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 484
Bst2BI CACGAG 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 179
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 3 cut(s) 106, 201, 483
BstMBI GATC 3 cut(s) 103, 198, 480
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 459
CfoI GCGC 1 cut(s) 229
CseI GACGC 1 cut(s) 168
CviAII CATG 1 cut(s) 358
CviJI RGCY 5 cut(s) 18, 217, 341, 397, 434
CviKI_1 RGCY 5 cut(s) 18, 217, 341, 397, 434
DdeI CTNAG 1 cut(s) 179
DpnI GATC 3 cut(s) 105, 200, 482
DpnII GATC 3 cut(s) 103, 198, 480
DriI GACNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 483
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
FaeI CATG 1 cut(s) 361
FaiI YATR 8 cut(s) 83, 165, 167, 192, 194, 220, 330, 359
FatI CATG 1 cut(s) 357
FauNDI CATATG 1 cut(s) 165
FokI GGATG 1 cut(s) 218
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 230
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 3 cut(s) 22, 182, 337
Hpy188III TCNNGA 2 cut(s) 151, 484
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 271, 430
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 3 cut(s) 103, 198, 480
LpnPI CCDG 3 cut(s) 114, 282, 438
LweI GCATC 2 cut(s) 144, 196
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 37, 382
MalI GATC 3 cut(s) 105, 200, 482
MboI GATC 3 cut(s) 103, 198, 480
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 103
MluCI AATT 2 cut(s) 331, 399
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 5 cut(s) 68, 272, 275, 357, 480
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 139
NciI CCSGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 165
NdeII GATC 3 cut(s) 103, 198, 480
NlaIII CATG 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 382
PctI GAATGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PspEI GGTNACC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 103
Sau3AI GATC 3 cut(s) 103, 198, 480
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 101
SfaNI GCATC 2 cut(s) 144, 196
SfcI CTRYAG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 2 cut(s) 331, 399
SsiI CCGC 1 cut(s) 457
SspI AATATT 2 cut(s) 75, 257
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 197
TasI AATT 2 cut(s) 331, 399
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 493
TspRI CASTG 1 cut(s) 466
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.