Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001851.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

88376 .. 93601

Gene Structure 5226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgccgcaagatgtccctgcattttcgttcaagagtaatgatcaccttttccttcactgtccagtggtgttaagattaaggtataaacttcttcaggttgctagagtgagttgggtgccatctcagctggttcttcttctgctgagaggtttcttccttctggaggtggaagataaagtgttgttggaggaactcgtgttagccaatttttcaagtggtttcatcactaaggaaaaatgtttacgcccattacaggaatgcgactatcttagagctattgcctctcctcgccttgaagtatccactgtagtggacatcaaaacaggaaaggggatcaagagtaaggttcgtaccagctctggtatgttcttgagtcctcaagagaaaaagttcccaatgatacaggcaattgaaaaacgtatttctgtctattctcaagtgccaatagaaaatggggaactgattcaagttttgaggtatgaaaaggaccagtattataaacctcatcatgactacttctctgacacttttaacttgaaacgtggtggtcagcgagtagcaacaattctgatgtatctgagtgacaacgttgagggtggagaaacttattttcctatggctggctcaggtgaatgtagctgtggtggaaaagttgtcaagggtatgtctgtcaagccaactaaaggagatgctgtacttttctggagcatgggtctggatggccaatcagatccaaatagcatgcatgcagggtgtgaggtgctagctggggaaaagtggtcagccacaaaatggatgaggcaaagatctacctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

272

Amino Acids

30.66

Weight (kDa)

8.92

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	154 - 267	1.1e-10	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	155 - 267	4.5e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	792
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	588
AclWI	GGATC	2 cut(s)	341, 725
AcoI	YGGCCR	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	352, 696
AfiI	CCNNNNNNNGG	5 cut(s)	163, 253, 620, 683, 792
AgsI	TTSAA	6 cut(s)	31, 213, 296, 413, 467, 538
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	5 cut(s)	127, 275, 357, 639, 767
AluI	AGCT	5 cut(s)	127, 275, 357, 639, 767
AlwI	GGATC	2 cut(s)	341, 725
AoxI	GGCC	1 cut(s)	721
Asp700I	GAANNNNTTC	2 cut(s)	389, 462
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	2 cut(s)	35, 641
AsuNHI	GCTAGC	1 cut(s)	763
AvaII	GGWCC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	723
BanI	GGYRCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	194
BccI	CCATC	2 cut(s)	127, 713
BciVI	GTATCC	1 cut(s)	310
BclI	TGATCA	1 cut(s)	40
BfaI	CTAG	2 cut(s)	102, 764
BfmI	CTRYAG	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	806
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	679
BmtI	GCTAGC	1 cut(s)	767
BpmI	CTGGAG	2 cut(s)	182, 724
Bpu10I	CCTNAGC	1 cut(s)	625
BpuEI	CTTGAG	3 cut(s)	363, 391, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	678, 697, 708, 727
Bsc4I	CCNNNNNNNGG	5 cut(s)	163, 253, 620, 683, 792
Bse1I	ACTGG	2 cut(s)	62, 490
BseGI	GGATG	2 cut(s)	724, 801
BseLI	CCNNNNNNNGG	5 cut(s)	163, 253, 620, 683, 792
BseMII	CTCAG	4 cut(s)	134, 137, 569, 639
BseNI	ACTGG	2 cut(s)	62, 490
BseRI	GAGGAG	1 cut(s)	276
BseYI	CCCAGC	1 cut(s)	767
BshFI	GGCC	1 cut(s)	723
BshNI	GGYRCC	1 cut(s)	115
BslI	CCNNNNNNNGG	5 cut(s)	163, 253, 620, 683, 792
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	40, 333, 730, 806
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	723
BspCNI	CTCAG	4 cut(s)	135, 136, 570, 638
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	117
BspOI	GCTAGC	1 cut(s)	767
BspPI	GGATC	2 cut(s)	341, 725
BspT107I	GGYRCC	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	62, 490
BssMI	GATC	4 cut(s)	40, 333, 730, 806
BssSI	CACGAG	1 cut(s)	194
Bst2BI	CACGAG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	59, 307
BstC8I	GCNNGC	4 cut(s)	622, 743, 747, 765
BstDEI	CTNAG	6 cut(s)	123, 143, 228, 269, 578, 625
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	724, 801
BstKTI	GATC	4 cut(s)	43, 336, 733, 809
BstMBI	GATC	4 cut(s)	40, 333, 730, 806
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	2 cut(s)	745, 749
BstSFI	CTRYAG	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	730, 806
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	2 cut(s)	730, 806
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	723
BtsCI	GGATG	2 cut(s)	724, 801
BtsIMutI	CAGTG	3 cut(s)	55, 69, 303
Cac8I	GCNNGC	4 cut(s)	622, 743, 747, 765
CciI	TCATGA	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	351, 695
CviAII	CATG	4 cut(s)	509, 709, 742, 746
CviQI	GTAC	2 cut(s)	351, 695
DdeI	CTNAG	6 cut(s)	123, 143, 228, 269, 578, 625
DpnI	GATC	4 cut(s)	42, 335, 732, 808
DpnII	GATC	4 cut(s)	40, 333, 730, 806
EaeI	YGGCCR	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	747
FaeI	CATG	4 cut(s)	512, 712, 745, 749
FatI	CATG	4 cut(s)	508, 708, 741, 745
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	731, 808
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	102, 764
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	771
GsuI	CTGGAG	2 cut(s)	182, 724
HaeIII	GGCC	1 cut(s)	723
Hin1II	CATG	4 cut(s)	512, 712, 745, 749
HinfI	GANTC	2 cut(s)	373, 463
HphI	GGTGA	2 cut(s)	35, 641
Hpy166II	GTNNAC	2 cut(s)	242, 313
Hpy188I	TCNGA	4 cut(s)	523, 570, 579, 730
Hpy188III	TCNNGA	9 cut(s)	31, 161, 337, 370, 380, 509, 703, 716, 816
Hpy8I	GTNNAC	2 cut(s)	242, 313
HpyAV	CCTTC	2 cut(s)	62, 167
HpyCH4III	ACNGT	2 cut(s)	59, 307
HpyCH4IV	ACGT	3 cut(s)	418, 541, 588
HpyCH4V	TGCA	3 cut(s)	20, 745, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	6 cut(s)	123, 143, 228, 269, 578, 625
HpySE526I	ACGT	3 cut(s)	418, 541, 588
Hsp92II	CATG	4 cut(s)	512, 712, 745, 749
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	40, 333, 730, 806
LmnI	GCTCC	1 cut(s)	705
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	2 cut(s)	102, 764
MaeII	ACGT	3 cut(s)	418, 541, 588
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	4 cut(s)	42, 335, 732, 808
MboI	GATC	4 cut(s)	40, 333, 730, 806
MboII	GAAGA	5 cut(s)	83, 125, 128, 145, 182
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	2 cut(s)	730, 806
MlsI	TGGCCA	1 cut(s)	723
MluCI	AATT	3 cut(s)	205, 408, 564
MluNI	TGGCCA	1 cut(s)	723
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	165
Mox20I	TGGCCA	1 cut(s)	723
Mph1103I	ATGCAT	1 cut(s)	747
MroXI	GAANNNNTTC	2 cut(s)	389, 462
MscI	TGGCCA	1 cut(s)	723
MseI	TTAA	3 cut(s)	71, 77, 531
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	723
MspA1I	CMGCKG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	4 cut(s)	40, 333, 730, 806
NheI	GCTAGC	1 cut(s)	763
NlaIII	CATG	4 cut(s)	512, 712, 745, 749
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	747
NspI	RCATGY	2 cut(s)	745, 749
OliI	CACNNNNGTG	1 cut(s)	308
PaeI	GCATGC	2 cut(s)	745, 749
PagI	TCATGA	1 cut(s)	508
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	2 cut(s)	389, 462
PfeI	GAWTC	1 cut(s)	463
PflMI	CCANNNNNTGG	1 cut(s)	792
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	498
Psp1406I	AACGTT	1 cut(s)	588
PspFI	CCCAGC	1 cut(s)	767
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	730, 806
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	2 cut(s)	352, 696
RsaNI	GTAC	2 cut(s)	351, 695
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	71, 77, 531
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	40, 333, 730, 806
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	679
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	3 cut(s)	370, 378, 435
SmoI	CTYRAG	3 cut(s)	370, 378, 435
SphI	GCATGC	2 cut(s)	745, 749
Sse9I	AATT	3 cut(s)	205, 408, 564
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	102, 764
TaaI	ACNGT	2 cut(s)	59, 307
TaiI	ACGT	3 cut(s)	421, 544, 591
TasI	AATT	3 cut(s)	205, 408, 564
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	3 cut(s)	71, 77, 531
Tru9I	TTAA	3 cut(s)	71, 77, 531
TscAI	CASTG	3 cut(s)	62, 69, 310
TseFI	GTSAC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	2 cut(s)	211, 495
TspRI	CASTG	3 cut(s)	62, 69, 310
Van91I	CCANNNNNTGG	1 cut(s)	792
VpaK11BI	GGWCC	1 cut(s)	487
XagI	CCTNNNNNAGG	1 cut(s)	161
XceI	RCATGY	2 cut(s)	745, 749
XmnI	GAANNNNTTC	2 cut(s)	389, 462
XspI	CTAG	2 cut(s)	102, 764
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.