Rmu_sc0001851.1_g000019

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001851.1
N/A
Physical Location & Seq
Reverse (-)
94558 .. 102673
8116 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
atgaagctcgcacaacaagaaaaaatctgtttacacattgaagatgacgtggctcaatcaaatcatgctgccataatcattgaagaactcgaagcagtgtcgtcgtcacctttgctgggggtgactcgcagtaccaggaaaaagtgtcggccgtcgacgtcaagcttcaagtcagaagaaatcgacgtcgagcttcggtgttggagcagtacaattcggcgcgacgaggtggatgtagagggcgaagtcggcgaggaagagaaaaaggtcagtggctactccgacgaggactggaggttcggagaggtgagagaggttggtggagagcttcggagaaaaattcggtgggcggcggccaatgacgggattctggcaaaagttggtcggaatctggcggctgttgattgggctccggcaaagtctcatatgctggatgatttgcatttgaagaagttgaaagtcactgaaggtaaagttggaagaagaagaagaagagagaaatggcaagccaggcagctaggtcttttaacgaaagctgttgccggcctcagacgtattaatcttgacggtctgagatggagagtattcgatgcgaaaggccaggttcttggaaggctagcatctcaaatatctactgtgattcaaggaaaggataaaccaacatacactccaaatcgagatgatggagatatgtgcattgtgctgaacgcgaaggatatttgcgtcacgggtagtaaactgactgataaagtttatcattggcatactgggtatgtgggtcatctgaaggagaggacgttaaaagatcagatggtcaaagatcctacagaagtcattcgcaaagctgtgttgcgtatgcttccaaagaacaaattgcgcgatgatagagatagaaagctgaggatatttcctggtagtgaacacccctttggtgatcggccccttgaaccatatgtgatgccccctaggagagtaagggaaatgcggccccgtacaagacgagccattgtccgagctcagaaaaaggctgaacagaaacaacaagatgctaatgatccacgaaagggcaaaaagaaggatacacgggaattggttgcttctaattactcgagcttatttgggcttatgaaagttgttgaggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13

Protein Analysis

381

Amino Acids

43.64

Weight (kDa)

9.79

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13 PF00572 192 - 309 1.8e-44 Ribosomal protein L13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 161, 189
AccI GTMKAC 1 cut(s) 155
AccII CGCG 3 cut(s) 222, 710, 879
AciI CCGC 4 cut(s) 350, 353, 395, 985
AclWI GGATC 2 cut(s) 815, 1049
AcoI YGGCCR 2 cut(s) 149, 354
AcsI RAATTY 1 cut(s) 339
AcuI CTGAAG 2 cut(s) 486, 806
AcyI GRCGYC 2 cut(s) 158, 186
AfaI GTAC 3 cut(s) 133, 211, 994
AfiI CCNNNNNNNGG 3 cut(s) 116, 363, 1064
AgsI TTSAA 7 cut(s) 41, 83, 169, 448, 457, 644, 947
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 4 cut(s) 134, 509, 600, 910
AjuI GAANNNNNNNTTGG 4 cut(s) 459, 491, 912, 944
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
Alw21I GWGCWC 1 cut(s) 1018
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 2 cut(s) 815, 1049
Ama87I CYCGRG 1 cut(s) 1108
AoxI GGCC 6 cut(s) 149, 354, 544, 598, 938, 986
ApeKI GCWGC 2 cut(s) 68, 514
ApoI RAATTY 1 cut(s) 339
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AseI ATTAAT 1 cut(s) 558
Asp700I GAANNNNTTC 1 cut(s) 834
AspA2I CCTAGG 1 cut(s) 965
AspLEI GCGC 2 cut(s) 222, 879
AspS9I GGNCC 2 cut(s) 939, 987
AsuHPI GGTGA 4 cut(s) 99, 133, 319, 944
AsuNHI GCTAGC 1 cut(s) 616
AvaI CYCGRG 1 cut(s) 1108
AvrII CCTAGG 1 cut(s) 965
BanII GRGCYC 2 cut(s) 412, 1018
Bbv12I GWGCWC 1 cut(s) 1018
BbvCI CCTCAGC 1 cut(s) 899
BbvI GCAGC 2 cut(s) 55, 526
BccI CCATC 3 cut(s) 570, 677, 805
BceAI ACGGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 4 cut(s) 136, 511, 602, 912
BciVI GTATCC 1 cut(s) 1072
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 3 cut(s) 518, 617, 966
BfmI CTRYAG 1 cut(s) 825
BfuI GTATCC 1 cut(s) 1072
BisI GCNGC 6 cut(s) 69, 351, 354, 396, 515, 986
BlnI CCTAGG 1 cut(s) 965
BlsI GCNGC 6 cut(s) 70, 352, 355, 397, 516, 987
Bme1390I CCNGG 4 cut(s) 136, 511, 602, 912
BmeT110I CYCGRG 1 cut(s) 1108
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 939, 987
BmiI GGNNCC 3 cut(s) 411, 941, 989
BmrFI CCNGG 4 cut(s) 136, 511, 602, 912
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 4 cut(s) 580, 629, 948, 1036
BmtI GCTAGC 1 cut(s) 620
BmuI ACTGGG 1 cut(s) 777
BpmI CTGGAG 1 cut(s) 313
Bpu10I CCTNAGC 1 cut(s) 899
BsaHI GRCGYC 2 cut(s) 158, 186
BsaJI CCNNGG 1 cut(s) 965
BsaXI ACNNNNNCTCC 4 cut(s) 652, 682, 782, 812
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 363, 1064
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 2 cut(s) 296, 772
BseBI CCWGG 4 cut(s) 136, 511, 602, 912
BseDI CCNNGG 1 cut(s) 965
BseGI GGATG 2 cut(s) 238, 439
BseLI CCNNNNNNNGG 3 cut(s) 116, 363, 1064
BseMII CTCAG 4 cut(s) 562, 563, 890, 1031
BseNI ACTGG 2 cut(s) 296, 772
BseX3I CGGCCG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 55, 526
BseYI CCCAGC 1 cut(s) 115
Bsh1236I CGCG 3 cut(s) 222, 710, 879
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 6 cut(s) 151, 356, 546, 600, 940, 988
BsiEI CGRYCG 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 1018
BsiHKCI CYCGRG 1 cut(s) 1108
BsiSI CCGG 2 cut(s) 413, 543
BslI CCNNNNNNNGG 3 cut(s) 116, 363, 1064
BsmAI GTCTC 1 cut(s) 426
BsnI GGCC 6 cut(s) 151, 356, 546, 600, 940, 988
BsoBI CYCGRG 1 cut(s) 1108
Bsp1286I GDGCHC 2 cut(s) 412, 1018
Bsp143I GATC 4 cut(s) 805, 820, 934, 1054
BspACI CCGC 4 cut(s) 350, 353, 395, 985
BspANI GGCC 6 cut(s) 151, 356, 546, 600, 940, 988
BspCNI CTCAG 4 cut(s) 561, 564, 891, 1030
BspFNI CGCG 3 cut(s) 222, 710, 879
BspLI GGNNCC 3 cut(s) 411, 941, 989
BspOI GCTAGC 1 cut(s) 620
BspPI GGATC 2 cut(s) 815, 1049
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 2 cut(s) 296, 772
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 965
BssMI GATC 4 cut(s) 805, 820, 934, 1054
BssNI GRCGYC 2 cut(s) 158, 186
BssT1I CCWWGG 1 cut(s) 965
Bst2UI CCWGG 4 cut(s) 136, 511, 602, 912
Bst4CI ACNGT 2 cut(s) 569, 637
Bst6I CTCTTC 2 cut(s) 252, 487
BstACI GRCGYC 2 cut(s) 158, 186
BstC8I GCNNGC 4 cut(s) 9, 507, 544, 618
BstDEI CTNAG 4 cut(s) 548, 572, 899, 1017
BstF5I GGATG 2 cut(s) 238, 439
BstFNI CGCG 3 cut(s) 222, 710, 879
BstHHI GCGC 2 cut(s) 222, 879
BstKTI GATC 4 cut(s) 808, 823, 937, 1057
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 4 cut(s) 805, 820, 934, 1054
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 249, 511
BstNI CCWGG 4 cut(s) 136, 511, 602, 912
BstSCI CCNGG 4 cut(s) 134, 509, 600, 910
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 3 cut(s) 222, 710, 879
BstV1I GCAGC 2 cut(s) 55, 526
BstX2I RGATCY 1 cut(s) 820
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 1 cut(s) 820
BstZI CGGCCG 1 cut(s) 149
BsuI GTATCC 1 cut(s) 1072
BsuRI GGCC 6 cut(s) 151, 356, 546, 600, 940, 988
BtgZI GCGATG 1 cut(s) 894
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 238, 439
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 3 cut(s) 102, 277, 462
Cac8I GCNNGC 4 cut(s) 9, 507, 544, 618
CfoI GCGC 2 cut(s) 222, 879
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 2 cut(s) 939, 987
CseI GACGC 1 cut(s) 712
Csp6I GTAC 3 cut(s) 132, 210, 993
CviAII CATG 1 cut(s) 65
CviQI GTAC 3 cut(s) 132, 210, 993
DdeI CTNAG 4 cut(s) 548, 572, 899, 1017
DpnI GATC 4 cut(s) 807, 822, 936, 1056
DpnII GATC 4 cut(s) 805, 820, 934, 1054
EaeI YGGCCR 2 cut(s) 149, 354
EagI CGGCCG 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 252, 487
EarI CTCTTC 2 cut(s) 252, 487
Ecl136II GAGCTC 1 cut(s) 1016
EclXI CGGCCG 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 965
Eco24I GRGCYC 2 cut(s) 412, 1018
Eco52I CGGCCG 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 1016
Eco57I CTGAAG 2 cut(s) 486, 806
Eco88I CYCGRG 1 cut(s) 1108
EcoICRI GAGCTC 1 cut(s) 1016
EcoRII CCWGG 4 cut(s) 134, 509, 600, 910
EcoT14I CCWWGG 1 cut(s) 965
EcoT38I GRGCYC 2 cut(s) 412, 1018
ErhI CCWWGG 1 cut(s) 965
FaeI CATG 1 cut(s) 68
FatI CATG 1 cut(s) 64
FauNDI CATATG 2 cut(s) 426, 952
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 6 cut(s) 69, 351, 354, 396, 515, 986
FokI GGATG 2 cut(s) 245, 446
FriOI GRGCYC 2 cut(s) 412, 1018
Fsp4HI GCNGC 6 cut(s) 69, 351, 354, 396, 515, 986
FspBI CTAG 3 cut(s) 518, 617, 966
GlaI GCGC 2 cut(s) 221, 878
GluI GCNGC 6 cut(s) 69, 351, 354, 396, 515, 986
GsaI CCCAGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 6 cut(s) 151, 356, 546, 600, 940, 988
HapII CCGG 2 cut(s) 413, 543
HgaI GACGC 1 cut(s) 712
HhaI GCGC 2 cut(s) 222, 879
Hin1I GRCGYC 2 cut(s) 158, 186
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 2 cut(s) 220, 877
HinP1I GCGC 2 cut(s) 220, 877
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 4 cut(s) 124, 367, 388, 640
HpaII CCGG 2 cut(s) 413, 543
HphI GGTGA 4 cut(s) 99, 133, 319, 944
Hpy166II GTNNAC 4 cut(s) 32, 156, 737, 920
Hpy188III TCNNGA 2 cut(s) 563, 677
Hpy8I GTNNAC 4 cut(s) 32, 156, 737, 920
Hpy99I CGWCG 7 cut(s) 106, 157, 160, 188, 191, 227, 287
HpyAV CCTTC 5 cut(s) 461, 606, 706, 781, 1069
HpyCH4III ACNGT 2 cut(s) 569, 637
HpyCH4IV ACGT 5 cut(s) 48, 158, 186, 553, 797
HpyCH4V TGCA 2 cut(s) 442, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 511
HpyF3I CTNAG 4 cut(s) 548, 572, 899, 1017
HpySE526I ACGT 5 cut(s) 48, 158, 186, 553, 797
Hsp92I GRCGYC 2 cut(s) 158, 186
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 2 cut(s) 220, 877
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
Kzo9I GATC 4 cut(s) 805, 820, 934, 1054
LmnI GCTCC 2 cut(s) 204, 415
Lsp1109I GCAGC 2 cut(s) 55, 526
LweI GCATC 4 cut(s) 580, 629, 948, 1036
MaeI CTAG 3 cut(s) 518, 617, 966
MaeII ACGT 5 cut(s) 48, 158, 186, 553, 797
MaeIII GTNAC 4 cut(s) 105, 121, 460, 724
MalI GATC 4 cut(s) 807, 822, 936, 1056
MboI GATC 4 cut(s) 805, 820, 934, 1054
MflI RGATCY 1 cut(s) 820
MhlI GDGCHC 2 cut(s) 412, 1018
MluCI AATT 5 cut(s) 213, 339, 872, 1088, 1102
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 4 cut(s) 182, 306, 365, 457
MroNI GCCGGC 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 3 cut(s) 527, 558, 800
MspI CCGG 2 cut(s) 413, 543
MspR9I CCNGG 4 cut(s) 136, 511, 602, 912
MvaI CCWGG 4 cut(s) 136, 511, 602, 912
MvnI CGCG 3 cut(s) 222, 710, 879
MwoI GCNNNNNNNGC 2 cut(s) 249, 511
NaeI GCCGGC 1 cut(s) 544
NdeI CATATG 2 cut(s) 426, 952
NdeII GATC 4 cut(s) 805, 820, 934, 1054
NgoMIV GCCGGC 1 cut(s) 542
NheI GCTAGC 1 cut(s) 616
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 3 cut(s) 411, 941, 989
NmuCI GTSAC 4 cut(s) 105, 121, 460, 724
PaeR7I CTCGAG 1 cut(s) 1108
PdiI GCCGGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 834
PfeI GAWTC 3 cut(s) 367, 388, 640
PkrI GCNGC 6 cut(s) 70, 352, 355, 397, 516, 987
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PshBI ATTAAT 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 1018
Psp6I CCWGG 4 cut(s) 134, 509, 600, 910
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 4 cut(s) 134, 509, 600, 910
PspN4I GGNNCC 3 cut(s) 411, 941, 989
PspPI GGNCC 2 cut(s) 939, 987
PspXI VCTCGAGB 1 cut(s) 1108
PsuI RGATCY 1 cut(s) 820
RsaI GTAC 3 cut(s) 133, 211, 994
RsaNI GTAC 3 cut(s) 132, 210, 993
SacI GAGCTC 1 cut(s) 1018
SalI GTCGAC 1 cut(s) 154
SaqAI TTAA 3 cut(s) 527, 558, 800
SatI GCNGC 6 cut(s) 69, 351, 354, 396, 515, 986
Sau3AI GATC 4 cut(s) 805, 820, 934, 1054
Sau96I GGNCC 2 cut(s) 939, 987
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 4 cut(s) 136, 511, 602, 912
SduI GDGCHC 2 cut(s) 412, 1018
SfaNI GCATC 4 cut(s) 580, 629, 948, 1036
SfcI CTRYAG 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 1108
SgrDI CGTCGACG 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 1108
SmlI CTYRAG 1 cut(s) 1108
SmoI CTYRAG 1 cut(s) 1108
Sse9I AATT 5 cut(s) 213, 339, 872, 1088, 1102
SsiI CCGC 4 cut(s) 350, 353, 395, 985
SspMI CTAG 3 cut(s) 518, 617, 966
SstI GAGCTC 1 cut(s) 1018
StyD4I CCNGG 4 cut(s) 134, 509, 600, 910
StyI CCWWGG 1 cut(s) 965
TaaI ACNGT 2 cut(s) 569, 637
TaiI ACGT 5 cut(s) 51, 161, 189, 556, 800
TaqI TCGA 7 cut(s) 90, 155, 183, 189, 588, 676, 1109
TasI AATT 5 cut(s) 213, 339, 872, 1088, 1102
TatI WGTACW 1 cut(s) 209
TauI GCSGC 4 cut(s) 353, 356, 398, 988
TfiI GAWTC 3 cut(s) 367, 388, 640
Tru1I TTAA 3 cut(s) 527, 558, 800
Tru9I TTAA 3 cut(s) 527, 558, 800
TscAI CASTG 3 cut(s) 102, 277, 469
TseFI GTSAC 4 cut(s) 105, 121, 460, 724
TseI GCWGC 2 cut(s) 68, 514
Tsp45I GTSAC 4 cut(s) 105, 121, 460, 724
TspDTI ATGAA 2 cut(s) 17, 1142
TspRI CASTG 3 cut(s) 102, 277, 469
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 1 cut(s) 339
XhoI CTCGAG 1 cut(s) 1108
XmaJI CCTAGG 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 834
XspI CTAG 3 cut(s) 518, 617, 966
ZraI GACGTC 2 cut(s) 159, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.