Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001851.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

190858 .. 197834

Gene Structure 6977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atgattggctttggggacattctgtttccgggtttgcttattttatttactttcagatttgacaaagaaaacaagaagagtatgatcaatgggtattttctatggttgctaattggctatggaatggggcttttttttacgtacttgggcttgtacctcatgaatggcaatggtcagcctgcactcctctatcttgttccatgcacactaggtgttacagtgattttgggtttgataagaggtgagctgaaagaactttggagttatggcacagtgctatatccaactctgggtgattctggacaagacaatagatcacaacagcttccaggcggcgcgcggcttgcaggagggaggccggaggcatcccagactattctgggtagcgatcaaggtcagaggagatcgaggttgcacgttctaggcagcggccggacctgcaactgcaaggttctgggtagcgccgcaacctcattgccggcgactccacccgactgcagaccggtttctcagacccctaactctcctctaccaagacgcgctgcgtcgtcgaagcttgatcgaggcaggaggagcgacgtccgcactttttctgggttgctgacgtccgctctcaaacggctccgtcagcagcttccaggaggcgcgcggcttgcaggagggaggtcggaggcatcccggactgttctgggtagcgatcaaggtcagaggagatcaaggttgcacattctgggtggtggctggacctgcaactgcaaggttctgggtagcgccgcaacctcaccgccagcgactccaccctactgcagaccggtttctcagacccctaacccccctccagtaagctgcgccgcgtcgttgaagcttgatcgaggcaggaggagcgacgtccgcactttttctgggttgctgaggtctgctctcgaacggctccgtgtataccacgggatgtcatctttaggcgagagtcgcgctgagccaaaatccaacggaaattgcgaaaccgaatcgacagaagcgagagcaacaccgacttcacctggcgtgcggcttcgtggccatcaccagctccaacagttacccacgacgatgaagaagacgacggagccgagggaggagagcacgtggcagggaatcgaacgccgggtgaggaagcttgcacttggcagggagctgcatggcaaggttagggtcaatccccagagaaggcaacaggttcgagttcctgtaggagcagaggcacttcaagtcggcgtgcgacagcgccgagcagcaggtcttggtcggcctggaagggttaggttttgttacggccggcttgcaggacatcaagttattcacagacacattgcaaatggtctgcgcatcggagacctctacattaatgcaagcaaccaccaccagcaccgctgccatgaccaacaccagcttccgagcagcctccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

482

Amino Acids

52.79

Weight (kDa)

10.96

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	1 - 90	2.4e-33	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	582, 608, 891
Acc16I	TGCGCA	1 cut(s)	1364
Acc36I	ACCTGC	3 cut(s)	446, 755, 1265
AccBSI	CCGCTC	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	939
AccII	CGCG	7 cut(s)	338, 340, 540, 647, 649, 854, 972
AcoI	YGGCCR	3 cut(s)	430, 1057, 1312
AcvI	CACGTG	1 cut(s)	1125
AcyI	GRCGYC	3 cut(s)	579, 605, 888
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	2 cut(s)	143, 155
AfiI	CCNNNNNNNGG	2 cut(s)	290, 1206
AgeI	ACCGGT	2 cut(s)	502, 811
AgsI	TTSAA	2 cut(s)	862, 1247
AjnI	CCWGG	4 cut(s)	328, 637, 1039, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	1413, 1445
Alw21I	GWGCWC	1 cut(s)	1124
Alw26I	GTCTC	1 cut(s)	1365
AoxI	GGCC	5 cut(s)	356, 430, 1057, 1286, 1312
ApeKI	GCWGC	8 cut(s)	426, 542, 631, 846, 1174, 1271, 1410, 1437
AseI	ATTAAT	1 cut(s)	1383
AsiGI	ACCGGT	2 cut(s)	502, 811
AspS9I	GGNCC	2 cut(s)	435, 744
AsuC2I	CCSGG	3 cut(s)	30, 679, 1145
AsuHPI	GGTGA	6 cut(s)	254, 305, 774, 1029, 1055, 1159
AvaII	GGWCC	2 cut(s)	435, 744
BalI	TGGCCA	1 cut(s)	1059
BbrPI	CACGTG	1 cut(s)	1125
BbsI	GAAGAC	1 cut(s)	1103
Bbv12I	GWGCWC	1 cut(s)	1124
BbvCI	CCTCAGC	1 cut(s)	911
BbvI	GCAGC	7 cut(s)	438, 529, 643, 833, 1161, 1283, 1397
BccI	CCATC	1 cut(s)	1068
BceAI	ACGGC	3 cut(s)	635, 944, 1327
BcgI	CGANNNNNNTGC	2 cut(s)	1199, 1233
BciT130I	CCWGG	4 cut(s)	330, 639, 1041, 1290
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	3 cut(s)	30, 679, 1145
BcoDI	GTCTC	1 cut(s)	1365
BfaI	CTAG	2 cut(s)	209, 422
BfmI	CTRYAG	3 cut(s)	496, 805, 1227
BfoI	RGCGCY	3 cut(s)	465, 774, 1267
BfuAI	ACCTGC	3 cut(s)	446, 755, 1265
BlpI	GCTNAGC	1 cut(s)	975
Bme1390I	CCNGG	7 cut(s)	30, 330, 639, 679, 1041, 1145, 1290
Bme18I	GGWCC	2 cut(s)	435, 744
BmgT120I	GGNCC	2 cut(s)	435, 744
BmiI	GGNNCC	3 cut(s)	623, 932, 1107
BmrFI	CCNGG	7 cut(s)	30, 330, 639, 679, 1041, 1145, 1290
BmsI	GCATC	3 cut(s)	374, 683, 1374
BpiI	GAAGAC	1 cut(s)	1103
BplI	GAGNNNNNCTC	2 cut(s)	904, 936
BpmI	CTGGAG	1 cut(s)	822
Bpu10I	CCTNAGC	1 cut(s)	911
Bpu1102I	GCTNAGC	1 cut(s)	975
BpuMI	CCSGG	3 cut(s)	30, 679, 1145
BsaAI	YACGTR	2 cut(s)	141, 1125
BsaHI	GRCGYC	3 cut(s)	579, 605, 888
BsaI	GGTCTC	1 cut(s)	1365
BsaJI	CCNNGG	2 cut(s)	943, 1109
BsaWI	WCCGGW	2 cut(s)	502, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	1109, 1139
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 1206
Bse118I	RCCGGY	4 cut(s)	478, 502, 811, 1314
Bse1I	ACTGG	1 cut(s)	839
Bse3DI	GCAATG	3 cut(s)	175, 473, 1347
BseBI	CCWGG	4 cut(s)	330, 639, 1041, 1290
BseDI	CCNNGG	2 cut(s)	943, 1109
BseGI	GGATG	3 cut(s)	365, 674, 954
BseLI	CCNNNNNNNGG	2 cut(s)	290, 1206
BseMI	GCAATG	3 cut(s)	175, 473, 1347
BseMII	CTCAG	4 cut(s)	524, 833, 902, 966
BseNI	ACTGG	1 cut(s)	839
BsePI	GCGCGC	2 cut(s)	336, 645
BseRI	GAGGAG	7 cut(s)	176, 415, 516, 586, 724, 895, 1130
BseX3I	CGGCCG	2 cut(s)	430, 1312
BseXI	GCAGC	7 cut(s)	438, 529, 643, 833, 1161, 1283, 1397
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	7 cut(s)	338, 340, 540, 647, 649, 854, 972
Bsh1285I	CGRYCG	2 cut(s)	433, 1315
BshFI	GGCC	5 cut(s)	358, 432, 1059, 1288, 1314
BshTI	ACCGGT	2 cut(s)	502, 811
BsiEI	CGRYCG	2 cut(s)	433, 1315
BsiHKAI	GWGCWC	1 cut(s)	1124
BsiSI	CCGG	9 cut(s)	29, 359, 433, 479, 503, 679, 812, 1144, 1315
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	290, 1206
BsmAI	GTCTC	1 cut(s)	1365
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	5 cut(s)	358, 432, 1059, 1288, 1314
Bso31I	GGTCTC	1 cut(s)	1365
Bsp1286I	GDGCHC	1 cut(s)	1124
Bsp143I	GATC	8 cut(s)	84, 314, 388, 404, 559, 697, 713, 868
Bsp1720I	GCTNAGC	1 cut(s)	975
BspANI	GGCC	5 cut(s)	358, 432, 1059, 1288, 1314
BspCNI	CTCAG	4 cut(s)	523, 832, 903, 967
BspFNI	CGCG	7 cut(s)	338, 340, 540, 647, 649, 854, 972
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	623, 932, 1107
BspMAI	CTGCAG	2 cut(s)	500, 809
BspMI	ACCTGC	3 cut(s)	446, 755, 1265
BspTNI	GGTCTC	1 cut(s)	1365
BsrBI	CCGCTC	1 cut(s)	611
BsrDI	GCAATG	3 cut(s)	175, 473, 1347
BsrFI	RCCGGY	4 cut(s)	478, 502, 811, 1314
BsrI	ACTGG	1 cut(s)	839
BssAI	RCCGGY	4 cut(s)	478, 502, 811, 1314
BssECI	CCNNGG	2 cut(s)	943, 1109
BssHII	GCGCGC	2 cut(s)	336, 645
BssMI	GATC	8 cut(s)	84, 314, 388, 404, 559, 697, 713, 868
BssNAI	GTATAC	1 cut(s)	940
BssNI	GRCGYC	3 cut(s)	579, 605, 888
Bst1107I	GTATAC	1 cut(s)	940
Bst2UI	CCWGG	4 cut(s)	330, 639, 1041, 1290
Bst4CI	ACNGT	4 cut(s)	220, 274, 685, 1077
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	3 cut(s)	579, 605, 888
BstBAI	YACGTR	2 cut(s)	141, 1125
BstDEI	CTNAG	4 cut(s)	510, 819, 911, 975
BstDSI	CCRYGG	1 cut(s)	943
BstF5I	GGATG	3 cut(s)	365, 674, 954
BstFNI	CGCG	7 cut(s)	338, 340, 540, 647, 649, 854, 972
BstH2I	RGCGCY	3 cut(s)	465, 774, 1267
BstKTI	GATC	8 cut(s)	87, 317, 391, 407, 562, 700, 716, 871
BstMAI	GTCTC	1 cut(s)	1365
BstMBI	GATC	8 cut(s)	84, 314, 388, 404, 559, 697, 713, 868
BstMCI	CGRYCG	2 cut(s)	433, 1315
BstNI	CCWGG	4 cut(s)	330, 639, 1041, 1290
BstSCI	CCNGG	7 cut(s)	28, 328, 637, 677, 1039, 1143, 1288
BstSFI	CTRYAG	3 cut(s)	496, 805, 1227
BstSNI	TACGTA	1 cut(s)	141
BstUI	CGCG	7 cut(s)	338, 340, 540, 647, 649, 854, 972
BstV1I	GCAGC	7 cut(s)	438, 529, 643, 833, 1161, 1283, 1397
BstV2I	GAAGAC	1 cut(s)	1103
BstZ17I	GTATAC	1 cut(s)	940
BstZI	CGGCCG	2 cut(s)	430, 1312
BsuRI	GGCC	5 cut(s)	358, 432, 1059, 1288, 1314
BtgI	CCRYGG	1 cut(s)	943
BtsCI	GGATG	3 cut(s)	365, 674, 954
BtsIMutI	CAGTG	2 cut(s)	225, 279
BveI	ACCTGC	3 cut(s)	446, 755, 1265
CciI	TCATGA	1 cut(s)	159
Cfr10I	RCCGGY	4 cut(s)	478, 502, 811, 1314
Cfr13I	GGNCC	2 cut(s)	435, 744
CseI	GACGC	3 cut(s)	534, 546, 843
Csp6I	GTAC	2 cut(s)	142, 154
CspAI	ACCGGT	2 cut(s)	502, 811
CviAII	CATG	4 cut(s)	160, 201, 1178, 1415
CviQI	GTAC	2 cut(s)	142, 154
DdeI	CTNAG	4 cut(s)	510, 819, 911, 975
DpnI	GATC	8 cut(s)	86, 316, 390, 406, 561, 699, 715, 870
DpnII	GATC	8 cut(s)	84, 314, 388, 404, 559, 697, 713, 868
DraIII	CACNNNGTG	1 cut(s)	212
EaeI	YGGCCR	3 cut(s)	430, 1057, 1312
EagI	CGGCCG	2 cut(s)	430, 1312
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EclXI	CGGCCG	2 cut(s)	430, 1312
Eco105I	TACGTA	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	1365
Eco47I	GGWCC	2 cut(s)	435, 744
Eco52I	CGGCCG	2 cut(s)	430, 1312
Eco72I	CACGTG	1 cut(s)	1125
EcoRII	CCWGG	4 cut(s)	328, 637, 1039, 1288
FaeI	CATG	4 cut(s)	163, 204, 1181, 1418
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	4 cut(s)	159, 200, 1177, 1414
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	939
FokI	GGATG	3 cut(s)	352, 661, 961
FspBI	CTAG	2 cut(s)	209, 422
FspI	TGCGCA	1 cut(s)	1364
GsuI	CTGGAG	1 cut(s)	822
HaeII	RGCGCY	3 cut(s)	465, 774, 1267
HaeIII	GGCC	5 cut(s)	358, 432, 1059, 1288, 1314
HapII	CCGG	9 cut(s)	29, 359, 433, 479, 503, 679, 812, 1144, 1315
HgaI	GACGC	3 cut(s)	534, 546, 843
Hin1I	GRCGYC	3 cut(s)	579, 605, 888
Hin1II	CATG	4 cut(s)	163, 204, 1181, 1418
HindIII	AAGCTT	3 cut(s)	554, 863, 1154
HinfI	GANTC	6 cut(s)	296, 484, 793, 967, 1007, 1134
HpaII	CCGG	9 cut(s)	29, 359, 433, 479, 503, 679, 812, 1144, 1315
HphI	GGTGA	6 cut(s)	254, 305, 774, 1029, 1055, 1159
Hpy166II	GTNNAC	1 cut(s)	940
Hpy188I	TCNGA	8 cut(s)	56, 399, 513, 670, 708, 822, 1370, 1434
Hpy188III	TCNNGA	3 cut(s)	160, 300, 923
Hpy8I	GTNNAC	1 cut(s)	940
Hpy99I	CGWCG	7 cut(s)	550, 553, 581, 859, 890, 1090, 1105
HpyAV	CCTTC	2 cut(s)	1200, 1287
HpyCH4III	ACNGT	4 cut(s)	220, 274, 685, 1077
HpyCH4IV	ACGT	6 cut(s)	140, 417, 579, 605, 888, 1124
HpyF3I	CTNAG	4 cut(s)	510, 819, 911, 975
HpySE526I	ACGT	6 cut(s)	140, 417, 579, 605, 888, 1124
Hsp92I	GRCGYC	3 cut(s)	579, 605, 888
Hsp92II	CATG	4 cut(s)	163, 204, 1181, 1418
KroI	GCCGGC	2 cut(s)	478, 1314
KroNI	GCCGGC	2 cut(s)	480, 1316
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	8 cut(s)	84, 314, 388, 404, 559, 697, 713, 868
LmnI	GCTCC	8 cut(s)	573, 627, 882, 936, 1074, 1105, 1171, 1232
Lsp1109I	GCAGC	7 cut(s)	438, 529, 643, 833, 1161, 1283, 1397
LweI	GCATC	3 cut(s)	374, 683, 1374
MaeI	CTAG	2 cut(s)	209, 422
MaeII	ACGT	6 cut(s)	140, 417, 579, 605, 888, 1124
MaeIII	GTNAC	3 cut(s)	214, 1077, 1307
MalI	GATC	8 cut(s)	86, 316, 390, 406, 561, 699, 715, 870
MbiI	CCGCTC	1 cut(s)	611
MboI	GATC	8 cut(s)	84, 314, 388, 404, 559, 697, 713, 868
MboII	GAAGA	3 cut(s)	88, 1105, 1108
MhlI	GDGCHC	1 cut(s)	1124
MlsI	TGGCCA	1 cut(s)	1059
MluCI	AATT	2 cut(s)	111, 994
MluNI	TGGCCA	1 cut(s)	1059
MlyI	GAGTC	3 cut(s)	478, 787, 976
MmeI	TCCRAC	4 cut(s)	308, 648, 1011, 1096
Mox20I	TGGCCA	1 cut(s)	1059
MroNI	GCCGGC	2 cut(s)	478, 1314
MscI	TGGCCA	1 cut(s)	1059
MseI	TTAA	1 cut(s)	1383
MslI	CAYNNNNRTG	1 cut(s)	1088
Msp20I	TGGCCA	1 cut(s)	1059
MspA1I	CMGCKG	2 cut(s)	429, 1410
MspI	CCGG	9 cut(s)	29, 359, 433, 479, 503, 679, 812, 1144, 1315
MspR9I	CCNGG	7 cut(s)	30, 330, 639, 679, 1041, 1145, 1290
MvaI	CCWGG	4 cut(s)	330, 639, 1041, 1290
MvnI	CGCG	7 cut(s)	338, 340, 540, 647, 649, 854, 972
NaeI	GCCGGC	2 cut(s)	480, 1316
NciI	CCSGG	3 cut(s)	30, 679, 1145
NdeII	GATC	8 cut(s)	84, 314, 388, 404, 559, 697, 713, 868
NgoMIV	GCCGGC	2 cut(s)	478, 1314
NlaIII	CATG	4 cut(s)	163, 204, 1181, 1418
NlaIV	GGNNCC	3 cut(s)	623, 932, 1107
NmeAIII	GCCGAG	2 cut(s)	1134, 1292
NsbI	TGCGCA	1 cut(s)	1364
PagI	TCATGA	1 cut(s)	159
PauI	GCGCGC	2 cut(s)	336, 645
PcsI	WCGNNNNNNNCGW	3 cut(s)	996, 1016, 1106
PdiI	GCCGGC	2 cut(s)	480, 1316
PfeI	GAWTC	3 cut(s)	296, 1007, 1134
PfoI	TCCNGGA	2 cut(s)	637, 677
PinAI	ACCGGT	2 cut(s)	502, 811
PleI	GAGTC	3 cut(s)	478, 787, 975
PmaCI	CACGTG	1 cut(s)	1125
PmlI	CACGTG	1 cut(s)	1125
PpsI	GAGTC	3 cut(s)	478, 787, 975
Ppu21I	YACGTR	2 cut(s)	141, 1125
PshBI	ATTAAT	1 cut(s)	1383
Psp6I	CCWGG	4 cut(s)	328, 637, 1039, 1288
PspCI	CACGTG	1 cut(s)	1125
PspGI	CCWGG	4 cut(s)	328, 637, 1039, 1288
PspN4I	GGNNCC	3 cut(s)	623, 932, 1107
PspPI	GGNCC	2 cut(s)	435, 744
PstI	CTGCAG	2 cut(s)	500, 809
PteI	GCGCGC	2 cut(s)	336, 645
RsaI	GTAC	2 cut(s)	143, 155
RsaNI	GTAC	2 cut(s)	142, 154
RseI	CAYNNNNRTG	1 cut(s)	1088
SaqAI	TTAA	1 cut(s)	1383
Sau3AI	GATC	8 cut(s)	84, 314, 388, 404, 559, 697, 713, 868
Sau96I	GGNCC	2 cut(s)	435, 744
SchI	GAGTC	3 cut(s)	478, 787, 976
ScrFI	CCNGG	7 cut(s)	30, 330, 639, 679, 1041, 1145, 1290
SduI	GDGCHC	1 cut(s)	1124
SfaNI	GCATC	3 cut(s)	374, 683, 1374
SfcI	CTRYAG	3 cut(s)	496, 805, 1227
SinI	GGWCC	2 cut(s)	435, 744
SmiMI	CAYNNNNRTG	1 cut(s)	1088
SnaBI	TACGTA	1 cut(s)	141
Sse9I	AATT	2 cut(s)	111, 994
SspMI	CTAG	2 cut(s)	209, 422
StyD4I	CCNGG	7 cut(s)	28, 328, 637, 677, 1039, 1143, 1288
TaaI	ACNGT	4 cut(s)	220, 274, 685, 1077
TaiI	ACGT	6 cut(s)	143, 420, 582, 608, 891, 1127
TaqI	TCGA	8 cut(s)	407, 551, 562, 871, 924, 1010, 1137, 1219
TasI	AATT	2 cut(s)	111, 994
TauI	GCSGC	8 cut(s)	336, 343, 432, 467, 652, 776, 854, 1051
TfiI	GAWTC	3 cut(s)	296, 1007, 1134
Tru1I	TTAA	1 cut(s)	1383
Tru9I	TTAA	1 cut(s)	1383
TscAI	CASTG	2 cut(s)	225, 279
TseI	GCWGC	8 cut(s)	426, 542, 631, 846, 1174, 1271, 1410, 1437
TspDTI	ATGAA	2 cut(s)	176, 1106
TspGWI	ACGGA	4 cut(s)	614, 923, 1005, 1118
TspRI	CASTG	2 cut(s)	225, 279
VpaK11BI	GGWCC	2 cut(s)	435, 744
VspI	ATTAAT	1 cut(s)	1383
XmiI	GTMKAC	1 cut(s)	939
XspI	CTAG	2 cut(s)	209, 422
ZraI	GACGTC	3 cut(s)	580, 606, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.