Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001862.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

63815 .. 67246

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgtccctctttcggtgtcgagaaggcggtgatggctgcgctgctgatgtcggacccgttacaacaagccagaataggtcgttacatacctttccactactacctatagacagacaagaagataatagtagtaaccacagtgagtctgtttataaatacagacccaagcttagaaaattcatttcaaaatattcaaacaaacttctcagtctctctttctctctcaagcttctagcgtctccttcaagctttctcagttttcagaagatctgcgattctcgaacgtccgccatgaaaggtctcaagtctgcaaccgtcgcgagcaagaagcctgttgctgagttgctgggagccaaggctgaaccaaaaaagacgatgaagaaggagaaagttcagaaagtaagcaagaagaaggatgctgatgctccgaagcgtccagctggagccttcttcatcttcatggaggagttccgcaagagcttcaaactggagtttcctgatgcaaaatctggaccggctgttgggaaagctggtggtgagaaatggaagtcactgtctgctactgaaaaagctccctatgtcgaaaaagcttcaaagaggaaggcagagtatgaaatagctatgcaagaatatgagaagaagaagctgaattgcaatgcggatgctgaaaagtcagtggtgacagagaaatcggcttcagcttgtgagatccatgatgatgaagcggggcaggaagtgagctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

248

Amino Acids

27.38

Weight (kDa)

9.49

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box	PF00505	143 - 212	4.1e-20	HMG (high mobility group) box
HMG_box_2	PF09011	143 - 211	1.2e-09	HMG-box domain
HMG_WDHD1	PF24815	146 - 196	8.7e-11	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AccII	CGCG	1 cut(s)	320
AciI	CCGC	5 cut(s)	27, 288, 472, 659, 725
AclWI	GGATC	1 cut(s)	703
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	681
AfiI	CCNNNNNNNGG	2 cut(s)	12, 521
AgsI	TTSAA	5 cut(s)	186, 195, 246, 484, 594
Alw21I	GWGCWC	1 cut(s)	743
Alw26I	GTCTC	3 cut(s)	215, 243, 305
AlwI	GGATC	1 cut(s)	703
ApeKI	GCWGC	2 cut(s)	36, 41
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	53, 512
AsuHPI	GGTGA	3 cut(s)	41, 548, 691
AvaII	GGWCC	2 cut(s)	53, 512
BanII	GRGCYC	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	743
BbvI	GCAGC	2 cut(s)	23, 28
BccI	CCATC	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	215, 243, 305
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	105
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	2 cut(s)	37, 42
BlsI	GCNGC	2 cut(s)	38, 43
Bme18I	GGWCC	2 cut(s)	53, 512
BmgT120I	GGNCC	2 cut(s)	53, 512
BmiI	GGNNCC	3 cut(s)	55, 352, 445
BmsI	GCATC	4 cut(s)	406, 412, 490, 652
BpmI	CTGGAG	2 cut(s)	462, 509
BpuEI	CTTGAG	2 cut(s)	209, 287
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 521
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	421, 667
BseLI	CCNNNNNNNGG	2 cut(s)	12, 521
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	3 cut(s)	220, 268, 330
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	23, 28
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	12, 521
BsmAI	GTCTC	3 cut(s)	215, 243, 305
BsmBI	CGTCTC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp143I	GATC	2 cut(s)	267, 708
Bsp68I	TCGCGA	1 cut(s)	320
BspACI	CCGC	5 cut(s)	27, 288, 472, 659, 725
BspCNI	CTCAG	3 cut(s)	219, 267, 331
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	55, 352, 445
BspPI	GGATC	1 cut(s)	703
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	661
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	2 cut(s)	267, 708
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	140, 316, 555
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	5 cut(s)	170, 206, 254, 339, 744
BstF5I	GGATG	2 cut(s)	421, 667
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	270, 711
BstMAI	GTCTC	3 cut(s)	215, 243, 305
BstMBI	GATC	2 cut(s)	267, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 317
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	23, 28
BstX2I	RGATCY	2 cut(s)	267, 708
BstYI	RGATCY	2 cut(s)	267, 708
BtsCI	GGATG	2 cut(s)	421, 667
BtsIMutI	CAGTG	3 cut(s)	145, 551, 681
BtuMI	TCGCGA	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	53, 512
CseI	GACGC	2 cut(s)	225, 422
CviAII	CATG	3 cut(s)	292, 460, 713
DdeI	CTNAG	5 cut(s)	170, 206, 254, 339, 744
DpnI	GATC	2 cut(s)	269, 710
DpnII	GATC	2 cut(s)	267, 708
EciI	GGCGGA	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	741
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	53, 512
Eco53kI	GAGCTC	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	681
EcoICRI	GAGCTC	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	743
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	3 cut(s)	295, 463, 716
FatI	CATG	3 cut(s)	291, 459, 712
FauI	CCCGC	1 cut(s)	718
Fnu4HI	GCNGC	2 cut(s)	37, 42
FokI	GGATG	2 cut(s)	428, 674
FriOI	GRGCYC	1 cut(s)	743
Fsp4HI	GCNGC	2 cut(s)	37, 42
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	37, 42
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	462, 509
HapII	CCGG	1 cut(s)	515
HgaI	GACGC	2 cut(s)	225, 422
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	295, 463, 716
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	4 cut(s)	167, 227, 247, 588
HinfI	GANTC	2 cut(s)	143, 275
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	3 cut(s)	41, 548, 691
Hpy188I	TCNGA	4 cut(s)	53, 264, 396, 429
Hpy188III	TCNNGA	5 cut(s)	20, 279, 319, 497, 510
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	6 cut(s)	17, 252, 376, 406, 457, 595
HpyCH4III	ACNGT	3 cut(s)	140, 316, 555
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	311, 503, 625, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 317
HpyF3I	CTNAG	5 cut(s)	170, 206, 254, 339, 744
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	3 cut(s)	295, 463, 716
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	267, 708
LmnI	GCTCC	4 cut(s)	350, 430, 443, 577
Lsp1109I	GCAGC	2 cut(s)	23, 28
LweI	GCATC	4 cut(s)	406, 412, 490, 652
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	5 cut(s)	58, 81, 131, 549, 679
MalI	GATC	2 cut(s)	269, 710
MboI	GATC	2 cut(s)	267, 708
MboII	GAAGA	8 cut(s)	131, 277, 391, 421, 442, 448, 649, 652
MflI	RGATCY	2 cut(s)	267, 708
MhlI	GDGCHC	1 cut(s)	743
MluCI	AATT	2 cut(s)	176, 649
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	3 cut(s)	17, 457, 591
MslI	CAYNNNNRTG	2 cut(s)	458, 717
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	33, 317
NdeII	GATC	2 cut(s)	267, 708
NlaIII	CATG	3 cut(s)	295, 463, 716
NlaIV	GGNNCC	3 cut(s)	55, 352, 445
NmuCI	GTSAC	2 cut(s)	549, 679
NruI	TCGCGA	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	38, 43
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PsiI	TTATAA	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	743
PspFI	CCCAGC	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	55, 352, 445
PspPI	GGNCC	2 cut(s)	53, 512
PsuI	RGATCY	2 cut(s)	267, 708
PvuII	CAGCTG	1 cut(s)	440
RruI	TCGCGA	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	458, 717
SacI	GAGCTC	1 cut(s)	743
SatI	GCNGC	2 cut(s)	37, 42
Sau3AI	GATC	2 cut(s)	267, 708
Sau96I	GGNCC	2 cut(s)	53, 512
SchI	GAGTC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	743
SfaNI	GCATC	4 cut(s)	406, 412, 490, 652
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	53, 512
SmiMI	CAYNNNNRTG	2 cut(s)	458, 717
SmlI	CTYRAG	2 cut(s)	224, 302
SmoI	CTYRAG	2 cut(s)	224, 302
Sse9I	AATT	2 cut(s)	176, 649
SsiI	CCGC	5 cut(s)	27, 288, 472, 659, 725
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	743
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	140, 316, 555
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	3 cut(s)	19, 280, 582
TasI	AATT	2 cut(s)	176, 649
TfiI	GAWTC	1 cut(s)	275
TscAI	CASTG	3 cut(s)	145, 558, 681
TseFI	GTSAC	2 cut(s)	549, 679
TseI	GCWGC	2 cut(s)	36, 41
Tsp45I	GTSAC	2 cut(s)	549, 679
TspDTI	ATGAA	7 cut(s)	169, 308, 392, 442, 448, 627, 735
TspRI	CASTG	3 cut(s)	145, 558, 681
VpaK11BI	GGWCC	2 cut(s)	53, 512
XapI	RAATTY	1 cut(s)	176
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.