Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001891.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

168315 .. 168674

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgagagttcaccatcccactcacctccgatccaagtccggcattgacgacgaccaggacccgacccggaccataatgtccgggccgggcatgaccgtcggcgggccgctacggaagaaaggcatgggagtacggccatggctgctcctcgactcgaacggacaagctcaggtggtggaggtcggaaagcacgccatcatgcgccggacgggtctacccgcccgcgacctccggatcctcgacccgctgctctcgtacccgtcgacggttcttggtcgggagagagcgatcgtcattaacctggagcacatcaaggccatcattactgcgcttctctttttcgattacaaggttttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

119

Amino Acids

13.24

Weight (kDa)

10.18

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	50 - 110	2.7e-08	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AccI	GTMKAC	2 cut(s)	214, 263
AccII	CGCG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	5 cut(s)	102, 107, 219, 223, 245
AclWI	GGATC	3 cut(s)	24, 229, 242
AcoI	YGGCCR	1 cut(s)	134
AfaI	GTAC	2 cut(s)	132, 257
AfiI	CCNNNNNNNGG	2 cut(s)	102, 265
AjnI	CCWGG	2 cut(s)	54, 300
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw21I	GWGCWC	1 cut(s)	309
AlwI	GGATC	3 cut(s)	24, 229, 242
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	4 cut(s)	83, 104, 134, 315
ApeKI	GCWGC	2 cut(s)	142, 247
AspLEI	GCGC	2 cut(s)	204, 331
AspS9I	GGNCC	4 cut(s)	58, 69, 83, 104
AsuC2I	CCSGG	3 cut(s)	67, 82, 87
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	58, 69
BamHI	GGATCC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	129, 234
BccI	CCATC	3 cut(s)	21, 203, 326
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	2 cut(s)	56, 302
BcnI	CCSGG	3 cut(s)	67, 82, 87
BisI	GCNGC	3 cut(s)	107, 143, 248
BlsI	GCNGC	3 cut(s)	108, 144, 249
Bme1390I	CCNGG	5 cut(s)	56, 67, 82, 87, 302
Bme18I	GGWCC	2 cut(s)	58, 69
BmgT120I	GGNCC	4 cut(s)	58, 69, 83, 104
BmiI	GGNNCC	2 cut(s)	60, 236
BmrFI	CCNGG	5 cut(s)	56, 67, 82, 87, 302
BpmI	CTGGAG	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	168
BpuMI	CCSGG	3 cut(s)	67, 82, 87
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 265
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	56, 302
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	102, 265
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	129, 234
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	85, 106, 136, 317
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	6 cut(s)	39, 67, 81, 86, 205, 232
BslI	CCNNNNNNNGG	2 cut(s)	102, 265
BsnI	GGCC	4 cut(s)	85, 106, 136, 317
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	29, 234, 288
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	5 cut(s)	102, 107, 219, 223, 245
BspANI	GGCC	4 cut(s)	85, 106, 136, 317
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	60, 236
BspPI	GGATC	3 cut(s)	24, 229, 242
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	29, 234, 288
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	56, 302
Bst4CI	ACNGT	2 cut(s)	97, 268
BstC8I	GCNNGC	3 cut(s)	104, 192, 223
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	204, 331
BstKTI	GATC	3 cut(s)	32, 237, 291
BstMBI	GATC	3 cut(s)	29, 234, 288
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	2 cut(s)	56, 302
BstSCI	CCNGG	5 cut(s)	54, 65, 80, 85, 300
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	129, 234
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	85, 106, 136, 317
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	3 cut(s)	104, 192, 223
CfoI	GCGC	2 cut(s)	204, 331
Cfr13I	GGNCC	4 cut(s)	58, 69, 83, 104
Csp6I	GTAC	2 cut(s)	131, 256
CviAII	CATG	4 cut(s)	91, 124, 138, 199
CviJI	RGCY	6 cut(s)	85, 106, 136, 142, 167, 317
CviKI_1	RGCY	6 cut(s)	85, 106, 136, 142, 167, 317
CviQI	GTAC	2 cut(s)	131, 256
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	3 cut(s)	31, 236, 290
DpnII	GATC	3 cut(s)	29, 234, 288
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	58, 69
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	54, 300
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	4 cut(s)	94, 127, 141, 202
FaiI	YATR	5 cut(s)	74, 92, 125, 139, 200
FatI	CATG	4 cut(s)	90, 123, 137, 198
FauI	CCCGC	4 cut(s)	95, 226, 230, 252
FblI	GTMKAC	2 cut(s)	214, 263
Fnu4HI	GCNGC	3 cut(s)	107, 143, 248
Fsp4HI	GCNGC	3 cut(s)	107, 143, 248
GlaI	GCGC	2 cut(s)	203, 330
GluI	GCNGC	3 cut(s)	107, 143, 248
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	4 cut(s)	85, 106, 136, 317
HapII	CCGG	6 cut(s)	39, 67, 81, 86, 205, 232
HhaI	GCGC	2 cut(s)	204, 331
Hin1II	CATG	4 cut(s)	94, 127, 141, 202
Hin6I	GCGC	2 cut(s)	202, 329
HinP1I	GCGC	2 cut(s)	202, 329
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	6 cut(s)	39, 67, 81, 86, 205, 232
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	3 cut(s)	10, 215, 264
Hpy188I	TCNGA	2 cut(s)	29, 185
Hpy188III	TCNNGA	2 cut(s)	232, 278
Hpy8I	GTNNAC	3 cut(s)	10, 215, 264
Hpy99I	CGWCG	4 cut(s)	53, 101, 265, 268
HpyCH4III	ACNGT	2 cut(s)	97, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	94, 127, 141, 202
HspAI	GCGC	2 cut(s)	202, 329
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	29, 234, 288
LmnI	GCTCC	2 cut(s)	150, 304
Lsp1109I	GCAGC	2 cut(s)	129, 234
MalI	GATC	3 cut(s)	31, 236, 290
MboI	GATC	3 cut(s)	29, 234, 288
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	35, 158, 172, 239, 248
MroI	TCCGGA	1 cut(s)	231
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	6 cut(s)	39, 67, 81, 86, 205, 232
MspR9I	CCNGG	5 cut(s)	56, 67, 82, 87, 302
MvaI	CCWGG	2 cut(s)	56, 302
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	3 cut(s)	67, 82, 87
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	3 cut(s)	29, 234, 288
NlaIII	CATG	4 cut(s)	94, 127, 141, 202
NlaIV	GGNNCC	2 cut(s)	60, 236
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	108, 144, 249
Ple19I	CGATCG	1 cut(s)	291
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	54, 300
PspGI	CCWGG	2 cut(s)	54, 300
PspN4I	GGNNCC	2 cut(s)	60, 236
PspPI	GGNCC	4 cut(s)	58, 69, 83, 104
PspPPI	RGGWCCY	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	234
PvuI	CGATCG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	132, 257
RsaNI	GTAC	2 cut(s)	131, 256
SalI	GTCGAC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	3 cut(s)	107, 143, 248
Sau3AI	GATC	3 cut(s)	29, 234, 288
Sau96I	GGNCC	4 cut(s)	58, 69, 83, 104
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	5 cut(s)	56, 67, 82, 87, 302
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	7 cut(s)	27, 169, 174, 183, 231, 303, 354
SgrDI	CGTCGACG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	58, 69
SsiI	CCGC	5 cut(s)	102, 107, 219, 223, 245
StyD4I	CCNGG	5 cut(s)	54, 65, 80, 85, 300
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	97, 268
TaqI	TCGA	5 cut(s)	150, 155, 240, 263, 342
TauI	GCSGC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	2 cut(s)	142, 247
TspGWI	ACGGA	2 cut(s)	127, 174
VpaK11BI	GGWCC	2 cut(s)	58, 69
XmiI	GTMKAC	2 cut(s)	214, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.