Rmu_sc0001903.1_g000027

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001903.1
N/A
Physical Location & Seq
Forward (+)
123249 .. 128865
5617 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
atgcctcgctttctctccctactatctcccccaccattcccaaatcaaactacgtcgttcagtccgcgctgccttagctccgtccaagccgatcaatctctgcttctgcggtctccggcgagaggccttcgagttctcctcgctcagccaatccgactggcaccacgtccggctcacggtggtgtcgcggtccaagaagatgcacttttgtctctgcaactaactcatctcggatccagaattgctcctactccagccaggtatacccggaaaatggcaaaaggtagcaggggacgacgcaggattgcttctcgacaatacaggtcaggagcaatgtttttcggagattatgtaatagaaggaaataattatggatttgattcggacgaagaggatggtggttttgaagcagatgctgcaggaaggaatgcagggttcgggttgggtttggatgtggttcttctttggcatgcatttgggtccaacagacggatgaggcagcatgagagggcattccaccaggcatcagagggtagtgttgccatccggcacacgactcctattggtggtttggattcttctgaccaagatgacgacaatgacagtaacggtgatgatgatggcggcatgtcattggtgagcctgctccgacgtcatggcagggtcttgctgggacgctccgggaggagacgtagacgtagagaagcaaatagtgaggaacaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

241

Amino Acids

26.52

Weight (kDa)

10.39

Isoelectric Point (pI)

79.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 655
AccB1I GGYRCC 1 cut(s) 160
AccI GTMKAC 2 cut(s) 263, 694
AccII CGCG 2 cut(s) 67, 188
AciI CCGC 4 cut(s) 65, 109, 188, 624
AclWI GGATC 2 cut(s) 228, 241
AcyI GRCGYC 1 cut(s) 652
AfiI CCNNNNNNNGG 5 cut(s) 122, 176, 274, 489, 566
AgsI TTSAA 1 cut(s) 407
AjiI CACGTC 1 cut(s) 167
AjnI CCWGG 2 cut(s) 257, 519
AleI CACNNNNGTG 1 cut(s) 180
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 3 cut(s) 117, 216, 682
AlwI GGATC 2 cut(s) 228, 241
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 69, 416, 499
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 190, 480
AsuC2I CCSGG 2 cut(s) 268, 682
AsuHPI GGTGA 2 cut(s) 623, 649
AvaII GGWCC 2 cut(s) 190, 480
BamHI GGATCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 160
BbvI GCAGC 3 cut(s) 56, 403, 511
BccI CCATC 3 cut(s) 389, 551, 614
BciT130I CCWGG 2 cut(s) 259, 521
BcnI CCSGG 2 cut(s) 268, 682
BcoDI GTCTC 3 cut(s) 117, 216, 682
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 4 cut(s) 70, 417, 500, 625
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 4 cut(s) 71, 418, 501, 626
Bme1390I CCNGG 4 cut(s) 259, 268, 521, 682
Bme18I GGWCC 2 cut(s) 190, 480
BmgBI CACGTC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 190, 480
BmiI GGNNCC 3 cut(s) 162, 235, 481
BmrFI CCNGG 4 cut(s) 259, 268, 521, 682
BmsI GCATC 3 cut(s) 190, 403, 533
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 74
Bpu1102I GCTNAGC 1 cut(s) 144
BpuMI CCSGG 2 cut(s) 268, 682
BsaHI GRCGYC 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 117
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 676, 706
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 176, 274, 489, 566
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 259, 521
BseGI GGATG 4 cut(s) 400, 457, 498, 543
BseLI CCNNNNNNNGG 5 cut(s) 122, 176, 274, 489, 566
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 128, 700
BseXI GCAGC 3 cut(s) 56, 403, 511
BseYI CCCAGC 1 cut(s) 670
Bsh1236I CGCG 2 cut(s) 67, 188
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 160
BsiSI CCGG 5 cut(s) 116, 170, 268, 547, 681
BslFI GGGAC 2 cut(s) 306, 687
BslI CCNNNNNNNGG 5 cut(s) 122, 176, 274, 489, 566
BsmAI GTCTC 3 cut(s) 117, 216, 682
BsmBI CGTCTC 1 cut(s) 682
BsmFI GGGAC 2 cut(s) 306, 687
BsmI GAATGC 2 cut(s) 433, 512
BsnI GGCC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 91, 233
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 4 cut(s) 65, 109, 188, 624
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 2 cut(s) 67, 188
BspLI GGNNCC 3 cut(s) 162, 235, 481
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 2 cut(s) 228, 241
BspT107I GGYRCC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 162
BssMI GATC 2 cut(s) 91, 233
BssNAI GTATAC 1 cut(s) 264
BssNI GRCGYC 1 cut(s) 652
Bst1107I GTATAC 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 259, 521
Bst4CI ACNGT 3 cut(s) 179, 605, 611
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 652
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 471, 644
BstDEI CTNAG 2 cut(s) 74, 144
BstF5I GGATG 4 cut(s) 400, 457, 498, 543
BstFNI CGCG 2 cut(s) 67, 188
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 94, 236
BstMAI GTCTC 3 cut(s) 117, 216, 682
BstMBI GATC 2 cut(s) 91, 233
BstMWI GCNNNNNNNGC 2 cut(s) 75, 416
BstNI CCWGG 2 cut(s) 259, 521
BstNSI RCATGY 2 cut(s) 473, 631
BstSCI CCNGG 4 cut(s) 257, 266, 519, 680
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 2 cut(s) 67, 188
BstV1I GCAGC 3 cut(s) 56, 403, 511
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BstZ17I GTATAC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 126
BtrI CACGTC 1 cut(s) 167
BtsCI GGATG 4 cut(s) 400, 457, 498, 543
Cac8I GCNNGC 2 cut(s) 471, 644
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 190, 480
CseI GACGC 2 cut(s) 306, 684
CviAII CATG 4 cut(s) 470, 503, 628, 656
CviJI RGCY 7 cut(s) 78, 89, 126, 148, 173, 257, 642
CviKI_1 RGCY 7 cut(s) 78, 89, 126, 148, 173, 257, 642
DdeI CTNAG 2 cut(s) 74, 144
DpnI GATC 2 cut(s) 93, 235
DpnII GATC 2 cut(s) 91, 233
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 190, 480
EcoRII CCWGG 2 cut(s) 257, 519
EcoT22I ATGCAT 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 682
FaeI CATG 4 cut(s) 473, 506, 631, 659
FaiI YATR 7 cut(s) 264, 351, 372, 471, 504, 629, 657
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 2 cut(s) 306, 687
FatI CATG 4 cut(s) 469, 502, 627, 655
FblI GTMKAC 2 cut(s) 263, 694
Fnu4HI GCNGC 4 cut(s) 70, 417, 500, 625
FokI GGATG 4 cut(s) 407, 464, 505, 530
Fsp4HI GCNGC 4 cut(s) 70, 417, 500, 625
GlaI GCGC 1 cut(s) 68
GluI GCNGC 4 cut(s) 70, 417, 500, 625
GsaI CCCAGC 1 cut(s) 674
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 126
HapII CCGG 5 cut(s) 116, 170, 268, 547, 681
HgaI GACGC 2 cut(s) 306, 684
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 4 cut(s) 473, 506, 631, 659
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 3 cut(s) 380, 556, 575
HpaII CCGG 5 cut(s) 116, 170, 268, 547, 681
HphI GGTGA 2 cut(s) 623, 649
Hpy166II GTNNAC 2 cut(s) 264, 695
Hpy188I TCNGA 7 cut(s) 155, 233, 344, 385, 529, 583, 650
Hpy188III TCNNGA 3 cut(s) 237, 312, 327
Hpy8I GTNNAC 2 cut(s) 264, 695
Hpy99I CGWCG 3 cut(s) 58, 300, 654
HpyAV CCTTC 3 cut(s) 137, 353, 417
HpyCH4III ACNGT 3 cut(s) 179, 605, 611
HpyCH4IV ACGT 5 cut(s) 53, 166, 652, 691, 697
HpyCH4V TGCA 5 cut(s) 203, 217, 419, 431, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 416
HpyF3I CTNAG 2 cut(s) 74, 144
HpySE526I ACGT 5 cut(s) 53, 166, 652, 691, 697
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 4 cut(s) 473, 506, 631, 659
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 91, 233
LmnI GCTCC 5 cut(s) 83, 250, 329, 651, 683
Lsp1109I GCAGC 3 cut(s) 56, 403, 511
LweI GCATC 3 cut(s) 190, 403, 533
MaeII ACGT 5 cut(s) 53, 166, 652, 691, 697
MaeIII GTNAC 1 cut(s) 605
MalI GATC 2 cut(s) 93, 235
MboI GATC 2 cut(s) 91, 233
MboII GAAGA 4 cut(s) 209, 401, 452, 570
MflI RGATCY 1 cut(s) 233
MluCI AATT 2 cut(s) 240, 367
MlyI GAGTC 1 cut(s) 550
MmeI TCCRAC 3 cut(s) 178, 507, 673
MnlI CCTC 9 cut(s) 15, 116, 149, 385, 489, 501, 523, 678, 709
Mph1103I ATGCAT 1 cut(s) 475
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 5 cut(s) 116, 170, 268, 547, 681
MspR9I CCNGG 4 cut(s) 259, 268, 521, 682
Mva1269I GAATGC 2 cut(s) 433, 512
MvaI CCWGG 2 cut(s) 259, 521
MvnI CGCG 2 cut(s) 67, 188
MwoI GCNNNNNNNGC 2 cut(s) 75, 416
NciI CCSGG 2 cut(s) 268, 682
NdeII GATC 2 cut(s) 91, 233
NlaIII CATG 4 cut(s) 473, 506, 631, 659
NlaIV GGNNCC 3 cut(s) 162, 235, 481
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 2 cut(s) 473, 631
OliI CACNNNNGTG 1 cut(s) 180
PaeI GCATGC 1 cut(s) 473
PceI AGGCCT 1 cut(s) 126
PctI GAATGC 2 cut(s) 433, 512
PfeI GAWTC 2 cut(s) 380, 575
PfoI TCCNGGA 1 cut(s) 680
PkrI GCNGC 4 cut(s) 71, 418, 501, 626
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Psp6I CCWGG 2 cut(s) 257, 519
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 2 cut(s) 257, 519
PspN4I GGNNCC 3 cut(s) 162, 235, 481
PspPI GGNCC 2 cut(s) 190, 480
PstI CTGCAG 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 4 cut(s) 70, 417, 500, 625
Sau3AI GATC 2 cut(s) 91, 233
Sau96I GGNCC 2 cut(s) 190, 480
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 4 cut(s) 259, 268, 521, 682
SetI ASST 9 cut(s) 56, 80, 169, 263, 286, 326, 655, 694, 700
SfaNI GCATC 3 cut(s) 190, 403, 533
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 2 cut(s) 190, 480
SmiMI CAYNNNNRTG 1 cut(s) 180
SphI GCATGC 1 cut(s) 473
Sse9I AATT 2 cut(s) 240, 367
SseBI AGGCCT 1 cut(s) 126
SsiI CCGC 4 cut(s) 65, 109, 188, 624
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 4 cut(s) 257, 266, 519, 680
TaaI ACNGT 3 cut(s) 179, 605, 611
TaiI ACGT 5 cut(s) 56, 169, 655, 694, 700
TaqI TCGA 2 cut(s) 130, 313
TasI AATT 2 cut(s) 240, 367
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 2 cut(s) 380, 575
TseI GCWGC 3 cut(s) 69, 416, 499
TspGWI ACGGA 2 cut(s) 70, 505
VpaK11BI GGWCC 2 cut(s) 190, 480
XceI RCATGY 2 cut(s) 473, 631
XmiI GTMKAC 2 cut(s) 263, 694
ZraI GACGTC 1 cut(s) 653
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.