Rmu_sc0001904.1_g000023

Belongs to the universal ribosomal protein uS8 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001904.1
N/A
Physical Location & Seq
Reverse (-)
110964 .. 111641
678 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 477 bp
atgggtgttggtggttgctgtaaaaagatagttggactggcgggttgttgtgtgaatatggatgaagttaggaacttggcatgtgcttttatggttttggcagcgacaatggtgagagttagcgtgctgaatgatgctctcaagagcatgtacaatgcagagaaacgtggtaagcgtcaggtgatgatcaggccgtcatccaaagtgatcatcaagtttcttattgtcatgcaaaagcatggatacattggagagttcgagtatgttgacgaccacagctctggcaaaattgtggtcgaactcaatggaaggcttaaaaagtgtggggtcattagtcctcgttttgatgttggtgttaaggagattgaaggttggactgccaggttgcttccttcaagacaggttagtcaagcattagcagttagctttcttctcggaaaaaagaattgcagtggtctttcaagtttagaaatatga

Protein Analysis

158

Amino Acids

17.25

Weight (kDa)

9.46

Isoelectric Point (pI)

27.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 43 - 123 7.5e-11 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 405
AciI CCGC 1 cut(s) 41
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 3 cut(s) 368, 396, 462
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 2 cut(s) 279, 426
AluI AGCT 2 cut(s) 279, 426
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AsuHPI GGTGA 2 cut(s) 124, 193
BbvI GCAGC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 382
BciVI GTATCC 1 cut(s) 236
BclI TGATCA 2 cut(s) 186, 207
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 67, 197
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 113
BshFI GGCC 1 cut(s) 193
BsnI GGCC 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 2 cut(s) 186, 207
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 1 cut(s) 42
BssMI GATC 2 cut(s) 186, 207
Bst2UI CCWGG 1 cut(s) 382
BstAUI TGTACA 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 125
BstF5I GGATG 2 cut(s) 67, 197
BstKTI GATC 2 cut(s) 189, 210
BstMBI GATC 2 cut(s) 186, 207
BstNI CCWGG 1 cut(s) 382
BstNSI RCATGY 2 cut(s) 84, 151
BstSCI CCNGG 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 2 cut(s) 67, 197
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 125
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 151
CviAII CATG 4 cut(s) 81, 148, 229, 239
CviJI RGCY 4 cut(s) 193, 279, 313, 426
CviKI_1 RGCY 4 cut(s) 193, 279, 313, 426
CviQI GTAC 1 cut(s) 151
DpnI GATC 2 cut(s) 188, 209
DpnII GATC 2 cut(s) 186, 207
DrdI GACNNNNNNGTC 1 cut(s) 405
DseDI GACNNNNNNGTC 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 380
FaeI CATG 4 cut(s) 84, 151, 232, 242
FaiI YATR 8 cut(s) 59, 82, 92, 149, 230, 240, 264, 475
FatI CATG 4 cut(s) 80, 147, 228, 238
FauI CCCGC 1 cut(s) 34
FbaI TGATCA 2 cut(s) 186, 207
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 74, 184
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 193
HgaI GACGC 1 cut(s) 164
Hin1II CATG 4 cut(s) 84, 151, 232, 242
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HphI GGTGA 2 cut(s) 124, 193
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 437
Hpy188III TCNNGA 2 cut(s) 142, 396
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 303, 362, 402
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 158, 232, 450
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 4 cut(s) 84, 151, 232, 242
Ksp22I TGATCA 2 cut(s) 186, 207
Kzo9I GATC 2 cut(s) 186, 207
LpnPI CCDG 7 cut(s) 23, 164, 175, 267, 367, 386, 394
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 1 cut(s) 124
MaeII ACGT 1 cut(s) 166
MalI GATC 2 cut(s) 188, 209
MboI GATC 2 cut(s) 186, 207
MboII GAAGA 1 cut(s) 422
MluCI AATT 2 cut(s) 288, 445
MmeI TCCRAC 2 cut(s) 13, 353
MnlI CCTC 1 cut(s) 348
MseI TTAA 2 cut(s) 315, 357
MspR9I CCNGG 1 cut(s) 382
MvaI CCWGG 1 cut(s) 382
NdeII GATC 2 cut(s) 186, 207
NlaIII CATG 4 cut(s) 84, 151, 232, 242
NspI RCATGY 2 cut(s) 84, 151
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PkrI GCNGC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 315, 357
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 186, 207
ScrFI CCNGG 1 cut(s) 382
SetI ASST 7 cut(s) 169, 183, 281, 373, 386, 405, 428
SfaNI GCATC 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 288, 445
SsiI CCGC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 380
TaiI ACGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 258, 297
TasI AATT 2 cut(s) 288, 445
TatI WGTACW 1 cut(s) 150
Tru1I TTAA 2 cut(s) 315, 357
Tru9I TTAA 2 cut(s) 315, 357
TscAI CASTG 1 cut(s) 457
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 457
XceI RCATGY 2 cut(s) 84, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.