Rmu_sc0001905.1_g000001

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001905.1
N/A
Physical Location & Seq
Forward (+)
498 .. 5119
4622 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1080 bp
atgattgtgcagagaacttgggacgcaacagataagttggtcgatgaagaaactaggagcggtggacctgttgacaagtcattatggggttggttcaaggccatttcatatatggtgatcgggtttgttgtactagcagttctagcagaacctctcatagataatgttcaggacttctccggcgctgtaggcataccttctttcttcgtagcatttgtgcttgtcccgttagcaaccaatgctagacaagcaatttcagcaattagtgcagcaagtcgccaaacaccaagaaccactgatttgacattttcggagatttatggtggggtttttatgaacaatgtgctgggattttctgtgcttctggccataatttatgttcgtgaaatgacatgggaattctctgcagaagtattagtagttctaatagtctgcattgtggtgggtctcattgcaagtttgagatctacctttcctctctggacagcattcgctgccttcttgctctacccatctcactctctctcgtcgctcctgctctctctctctcgccagaagaagagacgcctcattgtacgtaccagactgctgaagaagagattgacctctaccttggggatggtggaagtgtggtggtcccttttagctgctatccctgcagtggttgcaggacaagcatttcgagtgaagaaaagacgtgatgaagagcagaaattaaagagtgctagaggaagggagaagagttctgatgagatttttgtctgcgagagggtatgcacatctaagaggatgctgaagaaagttggtgcattctcaaaggacccaattcctgatacttgtgttactgtgtgcggtgtttctgagcttgacgtatgcgctgtcctcgaaaaccatgcctcgaaaaccatgccaccagcacggcattctcgccaagaacctcaagtatggcagccttctgaaatggtcaatgcggcctccatcagcgaatgctttgaacacgttagggtcaccgaagacgccactaaggatgatgaagatgatgacgaagtaggcgaaggcgaaactggcttctttgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_7 EF-hand_8 Na_Ca_ex

Protein Analysis

359

Amino Acids

39.86

Weight (kDa)

6.48

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 34 - 171 5.6e-14 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 3 cut(s) 60, 852, 971
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 2 cut(s) 611, 815
AcyI GRCGYC 2 cut(s) 565, 1017
AfaI GTAC 3 cut(s) 132, 576, 580
AfiI CCNNNNNNNGG 1 cut(s) 661
AflIII ACRYGT 1 cut(s) 997
AgsI TTSAA 2 cut(s) 97, 995
AjiI CACGTC 1 cut(s) 698
AluBI AGCT 2 cut(s) 647, 865
AluI AGCT 2 cut(s) 647, 865
Alw26I GTCTC 2 cut(s) 452, 556
AoxI GGCC 3 cut(s) 99, 366, 972
ApeKI GCWGC 4 cut(s) 269, 494, 647, 949
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
AspLEI GCGC 2 cut(s) 185, 878
AspS9I GGNCC 3 cut(s) 65, 636, 820
AsuHPI GGTGA 2 cut(s) 127, 1000
AvaII GGWCC 3 cut(s) 65, 636, 820
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BalI TGGCCA 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 1020
BbvI GCAGC 4 cut(s) 281, 481, 634, 961
BccI CCATC 3 cut(s) 520, 613, 986
BceAI ACGGC 1 cut(s) 935
BcgI CGANNNNNNTGC 4 cut(s) 875, 889, 909, 923
BcoDI GTCTC 2 cut(s) 452, 556
BfaI CTAG 5 cut(s) 54, 134, 143, 243, 726
BfmI CTRYAG 3 cut(s) 186, 405, 657
BfoI RGCGCY 1 cut(s) 186
BglII AGATCT 1 cut(s) 464
BisI GCNGC 5 cut(s) 270, 495, 648, 950, 972
BlsI GCNGC 5 cut(s) 271, 496, 649, 951, 973
Bme18I GGWCC 3 cut(s) 65, 636, 820
BmgBI CACGTC 1 cut(s) 698
BmgT120I GGNCC 3 cut(s) 65, 636, 820
BmiI GGNNCC 2 cut(s) 638, 822
BmsI GCATC 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 1020
BpuEI CTTGAG 1 cut(s) 924
BsaAI YACGTR 1 cut(s) 578
BsaHI GRCGYC 2 cut(s) 565, 1017
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 612
Bsc4I CCNNNNNNNGG 1 cut(s) 661
Bse1I ACTGG 1 cut(s) 1069
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 3 cut(s) 624, 795, 1033
BseLI CCNNNNNNNGG 1 cut(s) 661
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 1069
BseXI GCAGC 4 cut(s) 281, 481, 634, 961
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 2 cut(s) 29, 288
BshFI GGCC 3 cut(s) 101, 368, 974
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 3 cut(s) 35, 209, 622
BslI CCNNNNNNNGG 1 cut(s) 661
BsmAI GTCTC 2 cut(s) 452, 556
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 3 cut(s) 35, 209, 622
BsmI GAATGC 4 cut(s) 488, 809, 922, 992
BsnI GGCC 3 cut(s) 101, 368, 974
Bso31I GGTCTC 1 cut(s) 452
Bsp143I GATC 2 cut(s) 117, 464
BspACI CCGC 3 cut(s) 60, 852, 971
BspANI GGCC 3 cut(s) 101, 368, 974
BspCNI CTCAG 1 cut(s) 853
BspLI GGNNCC 2 cut(s) 638, 822
BspMAI CTGCAG 2 cut(s) 409, 661
BspQI GCTCTTC 1 cut(s) 699
BspTNI GGTCTC 1 cut(s) 452
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 1 cut(s) 1069
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 2 cut(s) 117, 464
BssNI GRCGYC 2 cut(s) 565, 1017
BssT1I CCWWGG 1 cut(s) 612
Bst4CI ACNGT 1 cut(s) 847
Bst6I CTCTTC 4 cut(s) 554, 590, 699, 734
BstACI GRCGYC 2 cut(s) 565, 1017
BstAPI GCANNNNNTGC 4 cut(s) 239, 266, 494, 665
BstBAI YACGTR 1 cut(s) 578
BstDEI CTNAG 3 cut(s) 783, 861, 1023
BstEII GGTNACC 1 cut(s) 1006
BstF5I GGATG 3 cut(s) 624, 795, 1033
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 2 cut(s) 185, 878
BstKTI GATC 2 cut(s) 120, 467
BstMAI GTCTC 2 cut(s) 452, 556
BstMBI GATC 2 cut(s) 117, 464
BstPI GGTNACC 1 cut(s) 1006
BstSFI CTRYAG 3 cut(s) 186, 405, 657
BstSNI TACGTA 1 cut(s) 578
BstV1I GCAGC 4 cut(s) 281, 481, 634, 961
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 3 cut(s) 101, 368, 974
BtrI CACGTC 1 cut(s) 698
BtsCI GGATG 3 cut(s) 624, 795, 1033
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 294, 666
CfoI GCGC 2 cut(s) 185, 878
Cfr13I GGNCC 3 cut(s) 65, 636, 820
CseI GACGC 3 cut(s) 32, 573, 1025
Csp6I GTAC 3 cut(s) 131, 575, 579
CviAII CATG 3 cut(s) 393, 893, 907
CviJI RGCY 7 cut(s) 101, 368, 647, 865, 952, 974, 1068
CviKI_1 RGCY 7 cut(s) 101, 368, 647, 865, 952, 974, 1068
CviQI GTAC 3 cut(s) 131, 575, 579
DdeI CTNAG 3 cut(s) 783, 861, 1023
DpnI GATC 2 cut(s) 119, 466
DpnII GATC 2 cut(s) 117, 464
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 4 cut(s) 554, 590, 699, 734
EarI CTCTTC 4 cut(s) 554, 590, 699, 734
Eco105I TACGTA 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 3 cut(s) 65, 636, 820
Eco57I CTGAAG 2 cut(s) 611, 815
Eco91I GGTNACC 1 cut(s) 1006
EcoO109I RGGNCCY 1 cut(s) 820
EcoO65I GGTNACC 1 cut(s) 1006
EcoRI GAATTC 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 3 cut(s) 396, 896, 910
FaqI GGGAC 3 cut(s) 35, 209, 622
FatI CATG 3 cut(s) 392, 892, 906
Fnu4HI GCNGC 5 cut(s) 270, 495, 648, 950, 972
FokI GGATG 3 cut(s) 631, 802, 1040
Fsp4HI GCNGC 5 cut(s) 270, 495, 648, 950, 972
FspBI CTAG 5 cut(s) 54, 134, 143, 243, 726
GlaI GCGC 2 cut(s) 184, 877
GluI GCNGC 5 cut(s) 270, 495, 648, 950, 972
GsaI CCCAGC 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 3 cut(s) 101, 368, 974
HapII CCGG 1 cut(s) 180
HgaI GACGC 3 cut(s) 32, 573, 1025
HhaI GCGC 2 cut(s) 185, 878
Hin1I GRCGYC 2 cut(s) 565, 1017
Hin1II CATG 3 cut(s) 396, 896, 910
Hin6I GCGC 2 cut(s) 183, 876
HinP1I GCGC 2 cut(s) 183, 876
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 127, 1000
Hpy166II GTNNAC 2 cut(s) 65, 73
Hpy188I TCNGA 5 cut(s) 313, 748, 862, 958, 1079
Hpy188III TCNNGA 4 cut(s) 170, 383, 481, 830
Hpy8I GTNNAC 2 cut(s) 65, 73
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 5 cut(s) 207, 508, 726, 963, 1049
HpyCH4III ACNGT 1 cut(s) 847
HpyCH4IV ACGT 4 cut(s) 577, 697, 870, 999
HpyCH4V TGCA 9 cut(s) 10, 269, 407, 435, 455, 659, 668, 777, 809
HpyF3I CTNAG 3 cut(s) 783, 861, 1023
HpySE526I ACGT 4 cut(s) 577, 697, 870, 999
Hsp92I GRCGYC 2 cut(s) 565, 1017
Hsp92II CATG 3 cut(s) 396, 896, 910
HspAI GCGC 2 cut(s) 183, 876
Kzo9I GATC 2 cut(s) 117, 464
LguI GCTCTTC 1 cut(s) 699
LmnI GCTCC 2 cut(s) 57, 537
Lsp1109I GCAGC 4 cut(s) 281, 481, 634, 961
LweI GCATC 1 cut(s) 780
MaeI CTAG 5 cut(s) 54, 134, 143, 243, 726
MaeII ACGT 4 cut(s) 577, 697, 870, 999
MaeIII GTNAC 2 cut(s) 841, 1006
MalI GATC 2 cut(s) 119, 466
MbiI CCGCTC 1 cut(s) 60
MboI GATC 2 cut(s) 117, 464
MflI RGATCY 1 cut(s) 464
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 6 cut(s) 252, 261, 372, 398, 713, 825
MluNI TGGCCA 1 cut(s) 368
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 1 cut(s) 716
MslI CAYNNNNRTG 1 cut(s) 440
Msp20I TGGCCA 1 cut(s) 368
MspI CCGG 1 cut(s) 180
Mva1269I GAATGC 4 cut(s) 488, 809, 922, 992
NdeII GATC 2 cut(s) 117, 464
NlaIII CATG 3 cut(s) 396, 896, 910
NlaIV GGNNCC 2 cut(s) 638, 822
NmuCI GTSAC 1 cut(s) 1006
PciSI GCTCTTC 1 cut(s) 699
PcsI WCGNNNNNNNCGW 1 cut(s) 1050
PctI GAATGC 4 cut(s) 488, 809, 922, 992
PkrI GCNGC 5 cut(s) 271, 496, 649, 951, 973
Ppu21I YACGTR 1 cut(s) 578
PpuMI RGGWCCY 1 cut(s) 820
Psp5II RGGWCCY 1 cut(s) 820
PspEI GGTNACC 1 cut(s) 1006
PspFI CCCAGC 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 638, 822
PspPI GGNCC 3 cut(s) 65, 636, 820
PspPPI RGGWCCY 1 cut(s) 820
PsrI GAACNNNNNNTAC 4 cut(s) 123, 155, 405, 437
PstI CTGCAG 2 cut(s) 409, 661
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 3 cut(s) 132, 576, 580
RsaNI GTAC 3 cut(s) 131, 575, 579
RseI CAYNNNNRTG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 699
SaqAI TTAA 1 cut(s) 716
SatI GCNGC 5 cut(s) 270, 495, 648, 950, 972
Sau3AI GATC 2 cut(s) 117, 464
Sau96I GGNCC 3 cut(s) 65, 636, 820
SfaNI GCATC 1 cut(s) 780
SfcI CTRYAG 3 cut(s) 186, 405, 657
SinI GGWCC 3 cut(s) 65, 636, 820
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 939
SmoI CTYRAG 1 cut(s) 939
SnaBI TACGTA 1 cut(s) 578
Sse9I AATT 6 cut(s) 252, 261, 372, 398, 713, 825
SsiI CCGC 3 cut(s) 60, 852, 971
SspMI CTAG 5 cut(s) 54, 134, 143, 243, 726
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 847
TaiI ACGT 4 cut(s) 580, 700, 873, 1002
TaqI TCGA 4 cut(s) 42, 682, 885, 899
TasI AATT 6 cut(s) 252, 261, 372, 398, 713, 825
TatI WGTACW 1 cut(s) 130
TauI GCSGC 1 cut(s) 974
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TscAI CASTG 2 cut(s) 301, 666
TseFI GTSAC 1 cut(s) 1006
TseI GCWGC 4 cut(s) 269, 494, 647, 949
Tsp45I GTSAC 1 cut(s) 1006
TspDTI ATGAA 5 cut(s) 60, 96, 350, 717, 1047
TspRI CASTG 2 cut(s) 301, 666
VpaK11BI GGWCC 3 cut(s) 65, 636, 820
XapI RAATTY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 5 cut(s) 54, 134, 143, 243, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.