Rmu_sc0001913.1_g000028

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001913.1
N/A
Physical Location & Seq
Forward (+)
87038 .. 87790
753 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
atgggccaactaaaaagaaaaaaaagtgaggaattcggagaagaacaatctgaagaacaaagtccagaagaaacaattggggaaaagttaaaactgataaaatggaagaaagtaaatgagagaaaaaagcgaaagcagaaaactgaagatgaagaagaatcaagtgaagatgaggaagaaacaactgaagttgaagaagaatctaatgaagaacaagtccgggaacaagtccgcagtaagaagaacaataaggataaaaaggagaaaactaaaaaggagaaaagaagaaacagggaagaaactgaagatgaagaagaagaatcttatggagaagaagttcgtgccaagaagaagaagaaaatggataaaaggaagacaaaaaaagagagtacaaagaagaaggaagaaactgacgaggaagaagatacaaaggatgacgaagaggaaaaagtcccagggaaaaggaaaagatatgtaaaagagggttatgtgcagtatcgctgcacaatgcttgcttttctgaaaacaattgcagaaaacaaaaataacctgactgaagggactttagagctgctgcagaaaactccctttgtaacgctgatagatgcatttcatggaggttcaattaaagaaaaggatgcaaagaatcggatgatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

219

Amino Acids

26.16

Weight (kDa)

5.78

Isoelectric Point (pI)

79.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 5 cut(s) 72, 165, 207, 324, 576
AfaI GTAC 1 cut(s) 391
AgsI TTSAA 2 cut(s) 194, 624
AjnI CCWGG 1 cut(s) 454
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 1 cut(s) 571
AluI AGCT 1 cut(s) 571
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 3 cut(s) 501, 571, 574
ApoI RAATTY 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 3 cut(s) 488, 558, 561
BciT130I CCWGG 1 cut(s) 456
BcnI CCSGG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 575
BisI GCNGC 3 cut(s) 502, 572, 575
BlsI GCNGC 3 cut(s) 503, 573, 576
Bme1390I CCNGG 2 cut(s) 221, 456
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 221, 456
BmsI GCATC 2 cut(s) 595, 628
BpiI GAAGAC 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 454, 455
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 454, 455
BseGI GGATG 3 cut(s) 439, 643, 657
BseXI GCAGC 3 cut(s) 488, 558, 561
BsgI GTGCAG 2 cut(s) 487, 512
BshFI GGCC 1 cut(s) 6
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 2 cut(s) 437, 574
BsmFI GGGAC 2 cut(s) 437, 574
BsnI GGCC 1 cut(s) 6
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 579
BssECI CCNNGG 2 cut(s) 454, 455
Bst2UI CCWGG 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 513
BstF5I GGATG 3 cut(s) 439, 643, 657
BstNI CCWGG 1 cut(s) 456
BstSCI CCNGG 2 cut(s) 219, 454
BstSFI CTRYAG 1 cut(s) 575
BstV1I GCAGC 3 cut(s) 488, 558, 561
BstV2I GAAGAC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 3 cut(s) 439, 643, 657
Cac8I GCNNGC 1 cut(s) 513
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 390
CviAII CATG 1 cut(s) 614
CviJI RGCY 2 cut(s) 6, 571
CviKI_1 RGCY 2 cut(s) 6, 571
CviQI GTAC 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco57I CTGAAG 5 cut(s) 72, 165, 207, 324, 576
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 454
EcoT22I ATGCAT 1 cut(s) 610
FaeI CATG 1 cut(s) 617
FaiI YATR 4 cut(s) 327, 474, 489, 615
FaqI GGGAC 2 cut(s) 437, 574
FatI CATG 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 502, 572, 575
FokI GGATG 2 cut(s) 446, 650
Fsp4HI GCNGC 3 cut(s) 502, 572, 575
GluI GCNGC 3 cut(s) 502, 572, 575
HaeIII GGCC 1 cut(s) 6
HapII CCGG 1 cut(s) 220
Hin1II CATG 1 cut(s) 617
HinfI GANTC 4 cut(s) 158, 200, 320, 646
HpaII CCGG 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 38, 52, 522, 651
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 394, 551
HpyCH4V TGCA 6 cut(s) 493, 504, 533, 577, 608, 641
Hsp92II CATG 1 cut(s) 617
LpnPI CCDG 6 cut(s) 78, 233, 277, 441, 468, 563
Lsp1109I GCAGC 3 cut(s) 488, 558, 561
LweI GCATC 2 cut(s) 595, 628
MaeIII GTNAC 1 cut(s) 592
MfeI CAATTG 2 cut(s) 75, 528
MluCI AATT 4 cut(s) 32, 75, 528, 624
MnlI CCTC 6 cut(s) 22, 166, 409, 436, 475, 611
Mph1103I ATGCAT 1 cut(s) 610
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 3 cut(s) 89, 627, 658
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 221, 456
MunI CAATTG 2 cut(s) 75, 528
MvaI CCWGG 1 cut(s) 456
NciI CCSGG 1 cut(s) 221
NlaIII CATG 1 cut(s) 617
NsiI ATGCAT 1 cut(s) 610
PasI CCCWGGG 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 158, 200, 320, 646
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 3 cut(s) 503, 573, 576
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 579
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 89, 627, 658
SatI GCNGC 3 cut(s) 502, 572, 575
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 221, 456
SetI ASST 3 cut(s) 552, 573, 622
SfaNI GCATC 2 cut(s) 595, 628
SfcI CTRYAG 1 cut(s) 575
Sse9I AATT 4 cut(s) 32, 75, 528, 624
SsiI CCGC 1 cut(s) 232
StyD4I CCNGG 2 cut(s) 219, 454
TasI AATT 4 cut(s) 32, 75, 528, 624
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 4 cut(s) 158, 200, 320, 646
Tru1I TTAA 3 cut(s) 89, 627, 658
Tru9I TTAA 3 cut(s) 89, 627, 658
TseI GCWGC 3 cut(s) 501, 571, 574
TspDTI ATGAA 4 cut(s) 165, 222, 324, 602
XapI RAATTY 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.