Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001913.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

102765 .. 104118

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggatgagaacgctcaaacggtgactaatcatcacgccattcgaatctcacttcaatatgatacttttgattttgcttgcaatatgatactttcagatgagttgaaaggcagccttttcagactggactttatgagtatgatgaccaagttaaggcccttcattaggacatttttgaagaaagccagtgaaatgtttgaaatgtacgtgtacactatgggtgatcgagcctatgcattggaaatggccaagttgcttgatagggtgatatcacgtgatgatggtacccaaaaacatcaaaagggtctagatattgtggttgggcaagaaagtgctgttctgatactggatgatacagaaattctccacaccacgccatctcgttcctcgtcctcctcctcaatcggaatcggaggcgtaggcactgtaacttctctctatctccccaaacctgattcaagctctaatctctcactttcgcccaattcagagctggaggtcgacaggccaaaaaggccaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

174

Amino Acids

19.47

Weight (kDa)

5.55

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	46 - 120	3.3e-10	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	360
AcvI	CACGTG	1 cut(s)	275
AfaI	GTAC	3 cut(s)	206, 212, 286
AfiI	CCNNNNNNNGG	2 cut(s)	153, 165
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	56, 106, 178, 200, 459
AluBI	AGCT	2 cut(s)	462, 493
AluI	AGCT	2 cut(s)	462, 493
AoxI	GGCC	4 cut(s)	155, 246, 506, 515
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	360
Asp718I	GGTACC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	3 cut(s)	34, 233, 277
AsuII	TTCGAA	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	284
BbrPI	CACGTG	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	2 cut(s)	275, 385
BfaI	CTAG	1 cut(s)	308
BglI	GCCNNNNNGGC	1 cut(s)	514
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	43
BsaAI	YACGTR	2 cut(s)	208, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 165
Bse1I	ACTGG	3 cut(s)	129, 186, 351
BseGI	GGATG	2 cut(s)	10, 355
BseLI	CCNNNNNNNGG	2 cut(s)	153, 165
BseNI	ACTGG	3 cut(s)	129, 186, 351
BseRI	GAGGAG	2 cut(s)	385, 388
BseXI	GCAGC	1 cut(s)	123
BshFI	GGCC	4 cut(s)	157, 248, 508, 517
BshNI	GGYRCC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	153, 165
BsnI	GGCC	4 cut(s)	157, 248, 508, 517
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	223
BspANI	GGCC	4 cut(s)	157, 248, 508, 517
BspLI	GGNNCC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	129, 186, 351
BssMI	GATC	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	22, 427
BstAUI	TGTACA	1 cut(s)	210
BstBAI	YACGTR	2 cut(s)	208, 275
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	522
BstENI	CCTNNNNNAGG	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	10, 355
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	157, 248, 508, 517
BtsCI	GGATG	2 cut(s)	10, 355
BtsIMutI	CAGTG	2 cut(s)	193, 423
Cac8I	GCNNGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	205, 211, 285
CviJI	RGCY	9 cut(s)	114, 157, 185, 230, 248, 462, 493, 508, 517
CviKI_1	RGCY	9 cut(s)	114, 157, 185, 230, 248, 462, 493, 508, 517
CviQI	GTAC	3 cut(s)	205, 211, 285
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	270
Eco72I	CACGTG	1 cut(s)	275
EcoNI	CCTNNNNNAGG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	238
FaiI	YATR	6 cut(s)	60, 86, 134, 140, 218, 234
FalI	AAGNNNNNCTT	3 cut(s)	99, 131, 505
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	2 cut(s)	17, 362
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	4 cut(s)	157, 248, 508, 517
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	3 cut(s)	45, 408, 455
HphI	GGTGA	3 cut(s)	34, 233, 277
Hpy166II	GTNNAC	3 cut(s)	211, 213, 502
Hpy188I	TCNGA	6 cut(s)	97, 122, 342, 407, 413, 490
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	3 cut(s)	211, 213, 502
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	22, 427
HpyCH4IV	ACGT	2 cut(s)	207, 274
HpyCH4V	TGCA	2 cut(s)	81, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	2 cut(s)	207, 274
KpnI	GGTACC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	110, 199, 332, 465, 479, 490
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	207, 274
MaeIII	GTNAC	2 cut(s)	22, 427
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	2 cut(s)	360, 484
MluNI	TGGCCA	1 cut(s)	248
MnlI	CCTC	6 cut(s)	397, 403, 406, 407, 409, 490
Mox20I	TGGCCA	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	514
NdeII	GATC	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	45, 408, 455
PkrI	GCNGC	1 cut(s)	113
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	2 cut(s)	208, 275
PspCI	CACGTG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	156
RsaI	GTAC	3 cut(s)	206, 212, 286
RsaNI	GTAC	3 cut(s)	205, 211, 285
SalI	GTCGAC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	156
SetI	ASST	7 cut(s)	210, 277, 454, 464, 495, 501, 523
SfiI	GGCCNNNNNGGCC	1 cut(s)	514
SfuI	TTCGAA	1 cut(s)	43
Sse9I	AATT	2 cut(s)	360, 484
SspMI	CTAG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	22, 427
TaiI	ACGT	2 cut(s)	210, 277
TaqI	TCGA	3 cut(s)	43, 226, 501
TasI	AATT	2 cut(s)	360, 484
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	45, 408, 455
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	2 cut(s)	193, 430
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	151
TspRI	CASTG	2 cut(s)	193, 430
XagI	CCTNNNNNAGG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	360
XbaI	TCTAGA	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.