Rmu_sc0001921.1_g000001

WD40 repeats

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001921.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 480
479 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 479 bp
atgagtcatatccctttaagaagccggcctcaatctaaaacagatcttttaattcctgctgtcactctaaaagtttcccaacctccgaaagtggcagggtctagtgggaaggcacaagttagttctagttctcaagccagcccggcagtttctagtcagtctattagtgctagcaaagaaaaaggagataagtcttatagaagttcgtcaaagcaggatgttgaagttcaagataaagggacaaaacggaagatcgaggagaaagaacataaagaattaattctgatggttcgtactagctccaaaccctctataatccagtgccattcaaacaatcacatatccagtcatcacaagagaaagttgagatgtctttatatgtgtccagtgaatgatcggctttttgcaaccagcgctttggatggactggtcaacttgtgggaagttcaaggcagggggtcaggtgcttctctacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.35

Weight (kDa)

9.93

Isoelectric Point (pI)

74.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 295
AfeI AGCGCT 1 cut(s) 415
AgsI TTSAA 4 cut(s) 224, 230, 330, 449
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Aor51HI AGCGCT 1 cut(s) 415
AoxI GGCC 1 cut(s) 26
AseI ATTAAT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 143
AsuNHI GCTAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 280, 416
BcnI CCSGG 1 cut(s) 143
BfaI CTAG 5 cut(s) 102, 126, 153, 171, 297
BfoI RGCGCY 1 cut(s) 417
BglI GCCNNNNNGGC 1 cut(s) 143
BglII AGATCT 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmtI GCTAGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 4 cut(s) 319, 345, 386, 432
BseGI GGATG 2 cut(s) 223, 427
BseNI ACTGG 4 cut(s) 319, 345, 386, 432
BseRI GAGGAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 28
BsiSI CCGG 2 cut(s) 25, 143
BslFI GGGAC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 3 cut(s) 43, 252, 394
BspANI GGCC 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 4 cut(s) 319, 345, 386, 432
BssAI RCCGGY 1 cut(s) 24
BssMI GATC 3 cut(s) 43, 252, 394
BstC8I GCNNGC 3 cut(s) 26, 139, 172
BstDEI CTNAG 1 cut(s) 476
BstF5I GGATG 2 cut(s) 223, 427
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 3 cut(s) 46, 255, 397
BstMBI GATC 3 cut(s) 43, 252, 394
BstMWI GCNNNNNNNGC 2 cut(s) 143, 413
BstSCI CCNGG 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 2 cut(s) 223, 427
BtsIMutI CAGTG 2 cut(s) 326, 393
Cac8I GCNNGC 3 cut(s) 26, 139, 172
CfoI GCGC 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 24
Csp6I GTAC 1 cut(s) 294
CviJI RGCY 6 cut(s) 24, 28, 137, 141, 300, 400
CviKI_1 RGCY 6 cut(s) 24, 28, 137, 141, 300, 400
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 1 cut(s) 476
DpnI GATC 3 cut(s) 45, 254, 396
DpnII GATC 3 cut(s) 43, 252, 394
Eco47III AGCGCT 1 cut(s) 415
FaiI YATR 7 cut(s) 9, 198, 270, 314, 341, 378, 380
FaqI GGGAC 1 cut(s) 253
FokI GGATG 2 cut(s) 230, 434
FspBI CTAG 5 cut(s) 102, 126, 153, 171, 297
GlaI GCGC 1 cut(s) 415
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 1 cut(s) 28
HapII CCGG 2 cut(s) 25, 143
HhaI GCGC 1 cut(s) 416
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 25, 143
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 2 cut(s) 87, 285
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 413
HpyF3I CTNAG 1 cut(s) 476
HspAI GCGC 1 cut(s) 414
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Kzo9I GATC 3 cut(s) 43, 252, 394
LmnI GCTCC 1 cut(s) 305
MaeI CTAG 5 cut(s) 102, 126, 153, 171, 297
MaeIII GTNAC 1 cut(s) 61
MalI GATC 3 cut(s) 45, 254, 396
MboI GATC 3 cut(s) 43, 252, 394
MboII GAAGA 1 cut(s) 262
MflI RGATCY 1 cut(s) 43
MluCI AATT 3 cut(s) 51, 275, 279
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 39, 93, 250, 319
MroNI GCCGGC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 3 cut(s) 17, 50, 278
MspI CCGG 2 cut(s) 25, 143
MspR9I CCNGG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 143, 413
NaeI GCCGGC 1 cut(s) 26
NciI CCSGG 1 cut(s) 143
NdeII GATC 3 cut(s) 43, 252, 394
NgoMIV GCCGGC 1 cut(s) 24
NheI GCTAGC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 61
PdiI GCCGGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 279
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 278
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 3 cut(s) 17, 50, 278
Sau3AI GATC 3 cut(s) 43, 252, 394
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 143
SetI ASST 3 cut(s) 85, 302, 466
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 3 cut(s) 51, 275, 279
SspMI CTAG 5 cut(s) 102, 126, 153, 171, 297
StyD4I CCNGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 255
TasI AATT 3 cut(s) 51, 275, 279
Tru1I TTAA 3 cut(s) 17, 50, 278
Tru9I TTAA 3 cut(s) 17, 50, 278
TscAI CASTG 2 cut(s) 326, 393
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 2 cut(s) 326, 393
VspI ATTAAT 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 5 cut(s) 102, 126, 153, 171, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.