Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001921.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11598 .. 12455

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggtccgcaagctccagtccttaaccaccaaaatcttggttttggccaattcctctcctccttcaaaatcctatccagctgggtatagtccgaaaccacaatgctctgctcaatatcagttttgggaggcgaaatatggaactgaatcacagcaatcttcgccttctctatcccaaacccctcgccatttctccactatccgacccttctccgccgaaatcccctaccacccattgggcttcaatgaccagcgtttcaacacagaccactcccacaacttgggcctcgcccagtttctcgaattgctcacaagtacctccgccgaagggagatatggtctttcaggcgatttgggagctgggggggattggaagttggcgtttttgggtttcaagtggggtgagaagtggggctgttgcgatgaagaggcgtttagtttgatggtttgggttttggggagtcatagaaagtttagcactgcttggtgtttgacctcgtcgatcaagtccctcctctcccgcctcgacctcgacgccaacccaactcccgatccccgccgaactccgcttctcatgtcaccctcctctcctgccgccgtcgccaacccaacccatcctcttcaatttctcagcatccaaccaccgagctcgaagaagaagcagaccccagaaaaagaattaaaaaaaaaaaattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

232

Amino Acids

25.82

Weight (kDa)

9.35

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	235, 280
AciI	CCGC	7 cut(s)	7, 213, 321, 520, 556, 566, 594
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	3 cut(s)	235, 280, 327
AgsI	TTSAA	5 cut(s)	66, 244, 259, 394, 623
AluBI	AGCT	4 cut(s)	13, 80, 359, 648
AluI	AGCT	4 cut(s)	13, 80, 359, 648
Alw21I	GWGCWC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	2 cut(s)	45, 283
AspS9I	GGNCC	2 cut(s)	4, 283
AsuHPI	GGTGA	2 cut(s)	413, 570
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	650
Bbv12I	GWGCWC	1 cut(s)	650
BccI	CCATC	2 cut(s)	436, 621
BceAI	ACGGC	1 cut(s)	581
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 283
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	642
BmuI	ACTGGG	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 280, 327
Bse1I	ACTGG	2 cut(s)	16, 292
BseGI	GGATG	2 cut(s)	613, 633
BseLI	CCNNNNNNNGG	3 cut(s)	235, 280, 327
BseMII	CTCAG	1 cut(s)	643
BseNI	ACTGG	2 cut(s)	16, 292
BseRI	GAGGAG	3 cut(s)	48, 503, 574
BseYI	CCCAGC	2 cut(s)	80, 359
BshFI	GGCC	2 cut(s)	47, 285
BsiHKAI	GWGCWC	1 cut(s)	650
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	235, 280, 327
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	47, 285
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp143I	GATC	2 cut(s)	501, 550
BspACI	CCGC	7 cut(s)	7, 213, 321, 520, 556, 566, 594
BspANI	GGCC	2 cut(s)	47, 285
BspCNI	CTCAG	1 cut(s)	642
BspPI	GGATC	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	16, 292
BssMI	GATC	2 cut(s)	501, 550
BssNI	GRCGYC	1 cut(s)	534
Bst6I	CTCTTC	2 cut(s)	420, 624
BstACI	GRCGYC	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	613, 633
BstKTI	GATC	2 cut(s)	504, 553
BstMBI	GATC	2 cut(s)	501, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 599
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	47, 285
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	613, 633
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	4, 283
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	574
CviJI	RGCY	8 cut(s)	13, 47, 80, 240, 285, 359, 414, 648
CviKI_1	RGCY	8 cut(s)	13, 47, 80, 240, 285, 359, 414, 648
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	2 cut(s)	503, 552
DpnII	GATC	2 cut(s)	501, 550
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	420, 624
EarI	CTCTTC	2 cut(s)	420, 624
EciI	GGCGGA	2 cut(s)	202, 310
Ecl136II	GAGCTC	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	648
EcoICRI	GAGCTC	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	650
FaeI	CATG	1 cut(s)	577
FaiI	YATR	5 cut(s)	87, 138, 336, 465, 575
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	573
FauI	CCCGC	2 cut(s)	527, 563
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	2 cut(s)	600, 620
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	1 cut(s)	594
GluI	GCNGC	1 cut(s)	594
GsaI	CCCAGC	2 cut(s)	84, 363
HaeIII	GGCC	2 cut(s)	47, 285
HgaI	GACGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	1 cut(s)	577
HinfI	GANTC	2 cut(s)	146, 460
HphI	GGTGA	2 cut(s)	413, 570
Hpy188I	TCNGA	2 cut(s)	93, 203
Hpy188III	TCNNGA	2 cut(s)	299, 548
Hpy99I	CGWCG	3 cut(s)	502, 536, 602
HpyAV	CCTTC	4 cut(s)	72, 174, 217, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 599
HpyF3I	CTNAG	1 cut(s)	629
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	501, 550
LmnI	GCTCC	2 cut(s)	18, 356
LpnPI	CCDG	9 cut(s)	29, 66, 90, 263, 305, 330, 345, 603, 681
LweI	GCATC	1 cut(s)	642
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	2 cut(s)	503, 552
MboI	GATC	2 cut(s)	501, 550
MboII	GAAGA	5 cut(s)	150, 437, 611, 664, 667
MhlI	GDGCHC	1 cut(s)	650
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	5 cut(s)	49, 302, 623, 677, 691
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	2 cut(s)	226, 661
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	2 cut(s)	23, 680
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	160, 599
NdeII	GATC	2 cut(s)	501, 550
NlaIII	CATG	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	496
PflMI	CCANNNNNTGG	2 cut(s)	235, 280
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	650
PspFI	CCCAGC	2 cut(s)	80, 359
PspPI	GGNCC	2 cut(s)	4, 283
PsyI	GACNNNGTC	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	650
SaqAI	TTAA	2 cut(s)	23, 680
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	2 cut(s)	501, 550
Sau96I	GGNCC	2 cut(s)	4, 283
SchI	GAGTC	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	650
SetI	ASST	7 cut(s)	15, 82, 320, 361, 497, 531, 650
SfaNI	GCATC	1 cut(s)	642
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	5 cut(s)	49, 302, 623, 677, 691
SsiI	CCGC	7 cut(s)	7, 213, 321, 520, 556, 566, 594
SstI	GAGCTC	1 cut(s)	650
TaqI	TCGA	5 cut(s)	300, 500, 525, 531, 650
TasI	AATT	5 cut(s)	49, 302, 623, 677, 691
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	23, 680
Tru9I	TTAA	2 cut(s)	23, 680
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	496
Van91I	CCANNNNNTGG	2 cut(s)	235, 280
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.