Rmu_sc0001922.1_g000001

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001922.1
N/A
Physical Location & Seq
Forward (+)
1 .. 509
509 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 392 bp
tctatgacattacaggtttcaatagaggatcaccaaaatcccatacacccacaccaagtgcctatcaccctgaaacaacagcacccccaaaaaaatcagatactcctcctatcaaattccttcactctataactagcacatggaccgttgcaaaaacaagttattatcgacacaaggtgatactaaagaacacatcccagaaaccgataacaaatgtgaagctggtgcttggaaacctccaagggccattatggggtctctctccaactccacagaagaacacatatgagcttcctcaatggcagaaagtactgcagcctggcgccgagtgcacttttgtttacgttcaaggtggccctcaggcaaagatatctattcaaagctacaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
CBM49 Glyco_hydro_9

Protein Analysis

129

Amino Acids

14.37

Weight (kDa)

9.78

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM49 PF09478 37 - 116 5.2e-24 Carbohydrate binding domain CBM49
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 323
AdeI CACNNNGTG 2 cut(s) 58, 177
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 3 cut(s) 21, 349, 379
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 3 cut(s) 222, 291, 383
AluI AGCT 3 cut(s) 222, 291, 383
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 262
Alw44I GTGCAC 1 cut(s) 330
AlwI GGATC 1 cut(s) 36
AoxI GGCC 2 cut(s) 244, 354
ApaLI GTGCAC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 115
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 3 cut(s) 143, 244, 355
AsuHPI GGTGA 3 cut(s) 23, 58, 189
AvaII GGWCC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 313
BfoI RGCGCY 1 cut(s) 326
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 143, 244, 355
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 1 cut(s) 327
BshFI GGCC 2 cut(s) 246, 356
BshNI GGYRCC 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 2 cut(s) 246, 356
Bso31I GGTCTC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 1 cut(s) 28
BspANI GGCC 2 cut(s) 246, 356
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 317
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 323
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 313
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 327
Bsu36I CCTNAGG 1 cut(s) 359
BsuRI GGCC 2 cut(s) 246, 356
BtsCI GGATG 1 cut(s) 193
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 143, 244, 355
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 140
CviJI RGCY 6 cut(s) 222, 246, 291, 318, 356, 383
CviKI_1 RGCY 6 cut(s) 222, 246, 291, 318, 356, 383
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 359
DinI GGCGCC 1 cut(s) 324
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DraIII CACNNNGTG 2 cut(s) 58, 177
Eco130I CCWWGG 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 262
Eco32I GATATC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 318
EcoRV GATATC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 324
EheI GGCGCC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 1 cut(s) 143
FaiI YATR 7 cut(s) 5, 44, 130, 141, 252, 285, 287
FatI CATG 1 cut(s) 139
FauNDI CATATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 316
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 2 cut(s) 246, 356
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HphI GGTGA 3 cut(s) 23, 58, 189
Hpy166II GTNNAC 2 cut(s) 332, 342
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 2 cut(s) 332, 342
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 3 cut(s) 151, 315, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 323
KasI GGCGCC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 6 cut(s) 83, 208, 211, 305, 332, 346
Lsp1109I GCAGC 1 cut(s) 327
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 344
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 288
MfeI CAATTG 1 cut(s) 387
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 2 cut(s) 115, 387
Mly113I GGCGCC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 5 cut(s) 19, 116, 247, 305, 368
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 329
NarI GGCGCC 1 cut(s) 323
NdeI CATATG 1 cut(s) 285
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 351
PkrI GCNGC 1 cut(s) 317
PluTI GGCGCC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 3 cut(s) 143, 244, 355
PstI CTGCAG 1 cut(s) 317
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 3 cut(s) 143, 244, 355
ScaI AGTACT 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 334
SetI ASST 8 cut(s) 18, 179, 224, 239, 293, 347, 354, 385
SfcI CTRYAG 1 cut(s) 313
SfoI GGCGCC 1 cut(s) 324
SinI GGWCC 1 cut(s) 143
Sse9I AATT 2 cut(s) 115, 387
SspDI GGCGCC 1 cut(s) 322
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 1 cut(s) 347
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 115, 387
TatI WGTACW 1 cut(s) 309
TseI GCWGC 1 cut(s) 315
VneI GTGCAC 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 1 cut(s) 115
XspI CTAG 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.