Rmu_sc0001922.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001922.1
N/A
Physical Location & Seq
Forward (+)
76739 .. 77449
711 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
atgagaatagatcatgccactaaacaaggatccgaacaagaacaaacccatttgccaggattggagttagaccctgagccatctggtcacaatcatcataggttccactcaatgaacgccctagaaatcttgagggaaacggtacggattctccgcttcaattcctggggttttttggctattgctaccttattaatctgcccggtgtctgccgccgtgcttttgtcgaatatgctagttgatcactcacttgtaaagagactaactgttaggatgttactaattgccaagtccagtggactccccttgaggcctttcatcagccactcgtgccagaagtttgctgagacggctatctcctccgctatgtgctttcctttgtacctcacattgtccttgttgtcgaaagcagcgcttgtttactctgtgtattggagttattccctcaagaagtttgatgcctccaagttttacttgattatgtgcaaaatatggaggcggcttgtttctacgtacgtgtggatgtgtatggtatgggaagggcctcttttggtggttatgtattcatttgtagtgcttatcgactctatgatgagtgctgttttctacttcagttgcagatcttttaggatggaaacatctttagaaggtgaatctcattcaattttggaaacgataaccttttctgctgaatcagtcggtattcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.89

Weight (kDa)

8.52

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 154, 213, 363, 499
AclWI GGATC 2 cut(s) 24, 37
AcuI CTGAAG 1 cut(s) 595
AfaI GTAC 3 cut(s) 144, 383, 515
AfeI AGCGCT 1 cut(s) 414
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 3 cut(s) 160, 663, 707
AjnI CCWGG 2 cut(s) 55, 164
Alw26I GTCTC 2 cut(s) 253, 341
AlwI GGATC 2 cut(s) 24, 37
Aor51HI AGCGCT 1 cut(s) 414
AoxI GGCC 2 cut(s) 311, 542
ApeKI GCWGC 1 cut(s) 410
AseI ATTAAT 1 cut(s) 194
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 542
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 662
BamHI GGATCC 1 cut(s) 29
BauI CACGAG 1 cut(s) 328
BbvI GCAGC 1 cut(s) 422
BccI CCATC 2 cut(s) 88, 625
BceAI ACGGC 2 cut(s) 200, 366
BciT130I CCWGG 2 cut(s) 57, 166
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 253, 341
BfaI CTAG 2 cut(s) 122, 236
BfoI RGCGCY 1 cut(s) 416
BglII AGATCT 1 cut(s) 620
BisI GCNGC 3 cut(s) 213, 411, 500
BlsI GCNGC 3 cut(s) 214, 412, 501
Bme1390I CCNGG 3 cut(s) 57, 166, 203
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 2 cut(s) 31, 104
BmrFI CCNGG 3 cut(s) 57, 166, 203
BmsI GCATC 1 cut(s) 448
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 3 cut(s) 151, 328, 431
BpuMI CCSGG 1 cut(s) 203
BsaAI YACGTR 2 cut(s) 513, 517
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 57, 166
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 3 cut(s) 279, 528, 636
BseMII CTCAG 2 cut(s) 66, 336
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 422
BshFI GGCC 2 cut(s) 313, 544
BsiSI CCGG 1 cut(s) 203
BsiWI CGTACG 1 cut(s) 513
BsmAI GTCTC 2 cut(s) 253, 341
BsmBI CGTCTC 1 cut(s) 341
BsnI GGCC 2 cut(s) 313, 544
Bsp143I GATC 4 cut(s) 10, 29, 241, 620
BspACI CCGC 4 cut(s) 154, 213, 363, 499
BspANI GGCC 2 cut(s) 313, 544
BspCNI CTCAG 2 cut(s) 67, 337
BspLI GGNNCC 2 cut(s) 31, 104
BspPI GGATC 2 cut(s) 24, 37
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 4 cut(s) 10, 29, 241, 620
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
Bst2UI CCWGG 2 cut(s) 57, 166
Bst4CI ACNGT 2 cut(s) 142, 268
BstBAI YACGTR 2 cut(s) 513, 517
BstDEI CTNAG 2 cut(s) 75, 345
BstF5I GGATG 3 cut(s) 279, 528, 636
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 4 cut(s) 13, 32, 244, 623
BstMAI GTCTC 2 cut(s) 253, 341
BstMBI GATC 4 cut(s) 10, 29, 241, 620
BstMWI GCNNNNNNNGC 2 cut(s) 330, 350
BstNI CCWGG 2 cut(s) 57, 166
BstSCI CCNGG 3 cut(s) 55, 164, 201
BstSNI TACGTA 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 422
BstX2I RGATCY 2 cut(s) 29, 620
BstYI RGATCY 2 cut(s) 29, 620
BsuRI GGCC 2 cut(s) 313, 544
BtsCI GGATG 3 cut(s) 279, 528, 636
BtsIMutI CAGTG 1 cut(s) 301
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 542
Csp6I GTAC 3 cut(s) 143, 382, 514
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 1 cut(s) 14
CviJI RGCY 7 cut(s) 79, 179, 313, 324, 353, 502, 544
CviKI_1 RGCY 7 cut(s) 79, 179, 313, 324, 353, 502, 544
CviQI GTAC 3 cut(s) 143, 382, 514
DdeI CTNAG 2 cut(s) 75, 345
DpnI GATC 4 cut(s) 12, 31, 243, 622
DpnII GATC 4 cut(s) 10, 29, 241, 620
Eco105I TACGTA 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 313
Eco47III AGCGCT 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 595
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 55, 164
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 1 cut(s) 17
FalI AAGNNNNNCTT 6 cut(s) 399, 431, 458, 490, 531, 563
FatI CATG 1 cut(s) 13
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 213, 411, 500
FokI GGATG 3 cut(s) 286, 535, 643
Fsp4HI GCNGC 3 cut(s) 213, 411, 500
FspBI CTAG 2 cut(s) 122, 236
GlaI GCGC 1 cut(s) 414
GluI GCNGC 3 cut(s) 213, 411, 500
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 2 cut(s) 313, 544
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 415
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 5 cut(s) 148, 300, 584, 653, 692
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 2 cut(s) 299, 421
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 130, 448
Hpy8I GTNNAC 2 cut(s) 299, 421
HpyAV CCTTC 2 cut(s) 533, 641
HpyCH4III ACNGT 2 cut(s) 142, 268
HpyCH4IV ACGT 2 cut(s) 512, 516
HpyCH4V TGCA 2 cut(s) 486, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 350
HpyF3I CTNAG 2 cut(s) 75, 345
HpySE526I ACGT 2 cut(s) 512, 516
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 10, 29, 241, 620
LpnPI CCDG 9 cut(s) 42, 69, 69, 87, 151, 178, 216, 307, 347
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 122, 236
MaeII ACGT 2 cut(s) 512, 516
MaeIII GTNAC 2 cut(s) 86, 276
MalI GATC 4 cut(s) 12, 31, 243, 622
MboI GATC 4 cut(s) 10, 29, 241, 620
MflI RGATCY 2 cut(s) 29, 620
MluCI AATT 3 cut(s) 160, 282, 663
MlyI GAGTC 2 cut(s) 294, 578
MnlI CCTC 8 cut(s) 126, 303, 370, 395, 455, 472, 489, 555
MseI TTAA 1 cut(s) 194
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 3 cut(s) 57, 166, 203
MvaI CCWGG 2 cut(s) 57, 166
MwoI GCNNNNNNNGC 2 cut(s) 330, 350
NciI CCSGG 1 cut(s) 203
NdeII GATC 4 cut(s) 10, 29, 241, 620
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 2 cut(s) 31, 104
NmuCI GTSAC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 313
PfeI GAWTC 3 cut(s) 148, 653, 692
Pfl23II CGTACG 1 cut(s) 513
PkrI GCNGC 3 cut(s) 214, 412, 501
PleI GAGTC 2 cut(s) 294, 578
PpsI GAGTC 2 cut(s) 294, 578
Ppu21I YACGTR 2 cut(s) 513, 517
PshBI ATTAAT 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 55, 164
PspGI CCWGG 2 cut(s) 55, 164
PspLI CGTACG 1 cut(s) 513
PspN4I GGNNCC 2 cut(s) 31, 104
PspPI GGNCC 1 cut(s) 542
PsuI RGATCY 2 cut(s) 29, 620
RsaI GTAC 3 cut(s) 144, 383, 515
RsaNI GTAC 3 cut(s) 143, 382, 514
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 3 cut(s) 213, 411, 500
Sau3AI GATC 4 cut(s) 10, 29, 241, 620
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 2 cut(s) 294, 578
ScrFI CCNGG 3 cut(s) 57, 166, 203
SetI ASST 7 cut(s) 104, 191, 387, 515, 519, 652, 683
SfaNI GCATC 1 cut(s) 448
SmlI CTYRAG 3 cut(s) 130, 307, 446
SmoI CTYRAG 3 cut(s) 130, 307, 446
SnaBI TACGTA 1 cut(s) 513
Sse9I AATT 3 cut(s) 160, 282, 663
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 4 cut(s) 154, 213, 363, 499
SspMI CTAG 2 cut(s) 122, 236
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 3 cut(s) 55, 164, 201
TaaI ACNGT 2 cut(s) 142, 268
TaiI ACGT 2 cut(s) 515, 519
TaqI TCGA 3 cut(s) 227, 404, 582
TasI AATT 3 cut(s) 160, 282, 663
TauI GCSGC 2 cut(s) 215, 502
TfiI GAWTC 3 cut(s) 148, 653, 692
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 128, 307, 555
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 301
VspI ATTAAT 1 cut(s) 194
XspI CTAG 2 cut(s) 122, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.