Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

340926 .. 343657

Gene Structure 2732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgtttcaaagtgcaagaatcgagatttttgtgatacgacagacattgctgtactatctgggaatctatgatgaggctgcttcttcgaagccaatctatagaatcaacagtcatggtgctgcagagattggctacatgatgatcaagaataatgagaatattggtggcagtcagctaggcactgcaaatcaagtgggtactataaacttccacttggaattgttgcagattcgggaaatggggacacactattgcattgtccacatggtcactgttgtaaagcaaatggaatatgaaactatcaatcctggcacatttacatgccagggccagattaagattcatgcaagcaagtttgtgctgttaatatcaaatgaaccccacctagatttatccactgatggattttacctatttcaaagttggaaagttgcgagcaaaaatacagttgtataccttgacagtggcgagactcttatgatggacagagcaagcaatgagcgtggtctagtgggatatctaactagaccacttagaagactggtattcatgcgtctgtcaaacatatatgcatcagctgggaagtgtgctgatgttgcaaaagttaggctacatttaaaagagagggggatccagaaggtgcctggatcgtgttcaattgaagtttatggaatgatccatgacttcacctcgggcgatgttgatgagaaggagaaagagtacttgctcagtcgacatagtgagaagtggccagttcatcagtccattatcattcatcctaagttcctcggtcaatatgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

267

Amino Acids

30.33

Weight (kDa)

8.25

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	186 - 221	1.7e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	640
AccI	GTMKAC	2 cut(s)	453, 733
AclWI	GGATC	4 cut(s)	625, 638, 655, 670
AcoI	YGGCCR	1 cut(s)	749
AfaI	GTAC	3 cut(s)	53, 199, 722
AgsI	TTSAA	4 cut(s)	8, 419, 657, 662
AjnI	CCWGG	3 cut(s)	307, 324, 643
AluBI	AGCT	2 cut(s)	175, 578
AluI	AGCT	2 cut(s)	175, 578
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	4 cut(s)	625, 638, 655, 670
Ama87I	CYCGRG	1 cut(s)	691
AoxI	GGCC	2 cut(s)	328, 749
ApeKI	GCWGC	2 cut(s)	77, 119
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	679
AsuII	TTCGAA	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	691
BalI	TGGCCA	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	544
BbvI	GCAGC	2 cut(s)	64, 106
BccI	CCATC	2 cut(s)	395, 475
BciT130I	CCWGG	3 cut(s)	309, 326, 645
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	4 cut(s)	176, 386, 509, 525
BfmI	CTRYAG	2 cut(s)	97, 120
BisI	GCNGC	2 cut(s)	78, 120
BlsI	GCNGC	2 cut(s)	79, 121
BmcAI	AGTACT	1 cut(s)	722
Bme1390I	CCNGG	3 cut(s)	309, 326, 645
BmeT110I	CYCGRG	1 cut(s)	691
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	2 cut(s)	632, 642
BmrFI	CCNGG	3 cut(s)	309, 326, 645
BmsI	GCATC	1 cut(s)	581
BpiI	GAAGAC	1 cut(s)	544
Bpu14I	TTCGAA	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	325, 690, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bse1I	ACTGG	2 cut(s)	546, 752
Bse3DI	GCAATG	2 cut(s)	44, 502
BseBI	CCWGG	3 cut(s)	309, 326, 645
BseDI	CCNNGG	3 cut(s)	325, 690, 787
BseGI	GGATG	1 cut(s)	775
BseMI	GCAATG	2 cut(s)	44, 502
BseMII	CTCAG	1 cut(s)	742
BseNI	ACTGG	2 cut(s)	546, 752
BseXI	GCAGC	2 cut(s)	64, 106
BseYI	CCCAGC	1 cut(s)	578
BshFI	GGCC	2 cut(s)	330, 751
BshNI	GGYRCC	1 cut(s)	640
BsiHKCI	CYCGRG	1 cut(s)	691
BslFI	GGGAC	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	330, 751
BsoBI	CYCGRG	1 cut(s)	691
Bsp119I	TTCGAA	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	141, 630, 647, 675
BspANI	GGCC	2 cut(s)	330, 751
BspCNI	CTCAG	1 cut(s)	741
BspLI	GGNNCC	2 cut(s)	632, 642
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	4 cut(s)	625, 638, 655, 670
BspT104I	TTCGAA	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	2 cut(s)	44, 502
BsrI	ACTGG	2 cut(s)	546, 752
BssECI	CCNNGG	3 cut(s)	325, 690, 787
BssMI	GATC	4 cut(s)	141, 630, 647, 675
BssNAI	GTATAC	1 cut(s)	454
Bst1107I	GTATAC	1 cut(s)	454
Bst2UI	CCWGG	3 cut(s)	309, 326, 645
Bst4CI	ACNGT	4 cut(s)	110, 274, 448, 464
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	3 cut(s)	349, 436, 493
BstDEI	CTNAG	3 cut(s)	533, 728, 780
BstF5I	GGATG	1 cut(s)	775
BstKTI	GATC	4 cut(s)	144, 633, 650, 678
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	4 cut(s)	141, 630, 647, 675
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstNI	CCWGG	3 cut(s)	309, 326, 645
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	3 cut(s)	307, 324, 643
BstSFI	CTRYAG	2 cut(s)	97, 120
BstV1I	GCAGC	2 cut(s)	64, 106
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	630
BstZ17I	GTATAC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	330, 751
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	4 cut(s)	180, 270, 396, 469
Cac8I	GCNNGC	3 cut(s)	349, 436, 493
Cfr13I	GGNCC	1 cut(s)	328
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	52, 198, 721
CspCI	CAANNNNNGTGG	4 cut(s)	174, 209, 484, 519
CviAII	CATG	7 cut(s)	113, 136, 265, 321, 344, 550, 680
CviJI	RGCY	8 cut(s)	77, 91, 132, 175, 330, 578, 610, 751
CviKI_1	RGCY	8 cut(s)	77, 91, 132, 175, 330, 578, 610, 751
CviQI	GTAC	3 cut(s)	52, 198, 721
DdeI	CTNAG	3 cut(s)	533, 728, 780
DpnI	GATC	4 cut(s)	143, 632, 649, 677
DpnII	GATC	4 cut(s)	141, 630, 647, 675
DraI	TTTAAA	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	749
Eco32I	GATATC	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	691
EcoRII	CCWGG	3 cut(s)	307, 324, 643
EcoRV	GATATC	1 cut(s)	518
EcoT22I	ATGCAT	1 cut(s)	574
FaeI	CATG	7 cut(s)	116, 139, 268, 324, 347, 553, 683
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	7 cut(s)	112, 135, 264, 320, 343, 549, 679
FbaI	TGATCA	1 cut(s)	141
FblI	GTMKAC	2 cut(s)	453, 733
Fnu4HI	GCNGC	2 cut(s)	78, 120
FokI	GGATG	1 cut(s)	762
Fsp4HI	GCNGC	2 cut(s)	78, 120
FspBI	CTAG	4 cut(s)	176, 386, 509, 525
GluI	GCNGC	2 cut(s)	78, 120
GsaI	CCCAGC	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	330, 751
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	7 cut(s)	116, 139, 268, 324, 347, 553, 683
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HinfI	GANTC	6 cut(s)	18, 63, 102, 229, 340, 472
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	3 cut(s)	262, 454, 734
Hpy188III	TCNNGA	4 cut(s)	22, 145, 233, 634
Hpy8I	GTNNAC	3 cut(s)	262, 454, 734
HpyAV	CCTTC	2 cut(s)	631, 703
HpyCH4III	ACNGT	4 cut(s)	110, 274, 448, 464
HpyCH4V	TGCA	8 cut(s)	14, 122, 185, 226, 255, 347, 572, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	3 cut(s)	533, 728, 780
Hsp92II	CATG	7 cut(s)	116, 139, 268, 324, 347, 553, 683
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	141, 630, 647, 675
Lsp1109I	GCAGC	2 cut(s)	64, 106
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	4 cut(s)	176, 386, 509, 525
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	4 cut(s)	143, 632, 649, 677
MboI	GATC	4 cut(s)	141, 630, 647, 675
MboII	GAAGA	2 cut(s)	75, 549
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	630
MlsI	TGGCCA	1 cut(s)	751
MluCI	AATT	2 cut(s)	218, 657
MluNI	TGGCCA	1 cut(s)	751
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	4 cut(s)	67, 618, 700, 797
Mox20I	TGGCCA	1 cut(s)	751
Mph1103I	ATGCAT	1 cut(s)	574
MscI	TGGCCA	1 cut(s)	751
MseI	TTAA	3 cut(s)	336, 365, 617
MslI	CAYNNNNRTG	1 cut(s)	319
Msp20I	TGGCCA	1 cut(s)	751
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	3 cut(s)	309, 326, 645
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	3 cut(s)	309, 326, 645
MwoI	GCNNNNNNNGC	1 cut(s)	596
NdeII	GATC	4 cut(s)	141, 630, 647, 675
NlaIII	CATG	7 cut(s)	116, 139, 268, 324, 347, 553, 683
NlaIV	GGNNCC	2 cut(s)	632, 642
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	86
PfeI	GAWTC	5 cut(s)	18, 63, 102, 229, 340
PkrI	GCNGC	2 cut(s)	79, 121
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Psp6I	CCWGG	3 cut(s)	307, 324, 643
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	3 cut(s)	307, 324, 643
PspN4I	GGNNCC	2 cut(s)	632, 642
PspPI	GGNCC	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	3 cut(s)	53, 199, 722
RsaNI	GTAC	3 cut(s)	52, 198, 721
RseI	CAYNNNNRTG	1 cut(s)	319
SalI	GTCGAC	1 cut(s)	732
SaqAI	TTAA	3 cut(s)	336, 365, 617
SatI	GCNGC	2 cut(s)	78, 120
Sau3AI	GATC	4 cut(s)	141, 630, 647, 675
Sau96I	GGNCC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	722
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	3 cut(s)	309, 326, 645
SetI	ASST	7 cut(s)	177, 387, 414, 459, 580, 642, 692
SfaNI	GCATC	1 cut(s)	581
SfcI	CTRYAG	2 cut(s)	97, 120
SfuI	TTCGAA	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	319
Sse9I	AATT	2 cut(s)	218, 657
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	4 cut(s)	176, 386, 509, 525
StyD4I	CCNGG	3 cut(s)	307, 324, 643
TaaI	ACNGT	4 cut(s)	110, 274, 448, 464
TaqI	TCGA	3 cut(s)	21, 86, 733
TaqII	GACCGA	1 cut(s)	779
TasI	AATT	2 cut(s)	218, 657
TatI	WGTACW	2 cut(s)	51, 720
TfiI	GAWTC	5 cut(s)	18, 63, 102, 229, 340
Tru1I	TTAA	3 cut(s)	336, 365, 617
Tru9I	TTAA	3 cut(s)	336, 365, 617
TscAI	CASTG	4 cut(s)	187, 277, 403, 469
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	77, 119
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	6 cut(s)	309, 332, 390, 538, 746, 764
TspRI	CASTG	4 cut(s)	187, 277, 403, 469
XceI	RCATGY	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	2 cut(s)	453, 733
XspI	CTAG	4 cut(s)	176, 386, 509, 525
ZrmI	AGTACT	1 cut(s)	722
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.