Rmu_sc0001966.1_g000045

2,3-bisphosphoglycerate-independent phosphoglycerate mutase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001966.1
N/A
Physical Location & Seq
Reverse (-)
212937 .. 213296
360 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
atgtgtcaataccaaagttgggatttaagactcctcttcaggcggccaaactgccgaatttgttccgctggagttaatggtctgatggaccctgttgaagttggtatgggttgtggaagtgacacagcccatctttctctaatgggttacaaccctagggtatattaccggggtcgcggtgcatttgagtccatgggagcagggttggcaatgtcaccaggtgacattgcatttaaggtcagtattattttaatcatctcatttcttcataaaatggtagcttgttataatgatagttgcaacatgatcctggatgagcgttttcaatttgatgcattgcagttgatcattatcacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metalloenzyme PhosphMutase

Protein Analysis

119

Amino Acids

13.28

Weight (kDa)

6.69

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhosphMutase PF10143 23 - 85 2e-24 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 43, 66, 177
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 22
AdeI CACNNNGTG 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 2 cut(s) 98, 326
AjnI CCWGG 2 cut(s) 217, 309
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
AlwI GGATC 1 cut(s) 301
AoxI GGCC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 61
AspA2I CCTAGG 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 207, 233
AvaII GGWCC 1 cut(s) 88
AvrII CCTAGG 1 cut(s) 155
BccI CCATC 2 cut(s) 79, 138
BciT130I CCWGG 2 cut(s) 219, 311
BclI TGATCA 1 cut(s) 345
BcnI CCSGG 1 cut(s) 170
BfaI CTAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 44
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 3 cut(s) 170, 219, 311
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 3 cut(s) 170, 219, 311
BmsI GCATC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 350
BsaJI CCNNGG 3 cut(s) 155, 169, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse3DI GCAATG 3 cut(s) 216, 225, 335
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 2 cut(s) 219, 311
BseDI CCNNGG 3 cut(s) 155, 169, 192
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 3 cut(s) 216, 225, 335
BseRI GAGGAG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 19
BsnI GGCC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 306, 345
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 3 cut(s) 43, 66, 177
BspANI GGCC 1 cut(s) 46
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 301
BsrDI GCAATG 3 cut(s) 216, 225, 335
BssECI CCNNGG 3 cut(s) 155, 169, 192
BssMI GATC 2 cut(s) 306, 345
BssT1I CCWWGG 2 cut(s) 155, 192
Bst2UI CCWGG 2 cut(s) 219, 311
Bst6I CTCTTC 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 177
BstKTI GATC 2 cut(s) 309, 348
BstMBI GATC 2 cut(s) 306, 345
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 219, 311
BstSCI CCNGG 3 cut(s) 168, 217, 309
BstUI CGCG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 88
CsiI ACCWGGT 1 cut(s) 217
CviAII CATG 2 cut(s) 193, 304
CviJI RGCY 3 cut(s) 46, 128, 281
CviKI_1 RGCY 3 cut(s) 46, 128, 281
DpnI GATC 2 cut(s) 308, 347
DpnII GATC 2 cut(s) 306, 345
DraIII CACNNNGTG 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 155, 192
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 217, 309
EcoT14I CCWWGG 2 cut(s) 155, 192
EcoT22I ATGCAT 1 cut(s) 337
ErhI CCWWGG 2 cut(s) 155, 192
FaeI CATG 2 cut(s) 196, 307
FaiI YATR 7 cut(s) 107, 163, 194, 270, 288, 305, 358
FatI CATG 2 cut(s) 192, 303
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 169
Hin1II CATG 2 cut(s) 196, 307
HinfI GANTC 2 cut(s) 30, 188
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 207, 233
Hpy188I TCNGA 1 cut(s) 84
HpyCH4V TGCA 5 cut(s) 182, 230, 300, 335, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 2 cut(s) 196, 307
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 2 cut(s) 306, 345
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 9 cut(s) 25, 54, 105, 182, 186, 204, 231, 296, 323
LweI GCATC 1 cut(s) 322
MabI ACCWGGT 1 cut(s) 217
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 4 cut(s) 119, 146, 213, 221
MalI GATC 2 cut(s) 308, 347
MboI GATC 2 cut(s) 306, 345
MboII GAAGA 2 cut(s) 28, 257
MluCI AATT 2 cut(s) 57, 326
MlyI GAGTC 2 cut(s) 24, 197
MnlI CCTC 1 cut(s) 44
Mph1103I ATGCAT 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 4 cut(s) 26, 75, 234, 251
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 170, 219, 311
MvaI CCWGG 2 cut(s) 219, 311
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 170
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 306, 345
NlaIII CATG 2 cut(s) 196, 307
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 3 cut(s) 119, 213, 221
NsiI ATGCAT 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 2 cut(s) 24, 196
PpsI GAGTC 2 cut(s) 24, 196
PsiI TTATAA 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 217, 309
PspGI CCWGG 2 cut(s) 217, 309
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 88
SaqAI TTAA 4 cut(s) 26, 75, 234, 251
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 2 cut(s) 306, 345
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 2 cut(s) 24, 197
ScrFI CCNGG 3 cut(s) 170, 219, 311
SetI ASST 3 cut(s) 223, 240, 283
SexAI ACCWGGT 1 cut(s) 217
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 88
Sse9I AATT 2 cut(s) 57, 326
SsiI CCGC 3 cut(s) 43, 66, 177
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 168, 217, 309
StyI CCWWGG 2 cut(s) 155, 192
TasI AATT 2 cut(s) 57, 326
TauI GCSGC 1 cut(s) 46
Tru1I TTAA 4 cut(s) 26, 75, 234, 251
Tru9I TTAA 4 cut(s) 26, 75, 234, 251
TseFI GTSAC 3 cut(s) 119, 213, 221
Tsp45I GTSAC 3 cut(s) 119, 213, 221
TspDTI ATGAA 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 57
XmaJI CCTAGG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.