Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001992.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18745 .. 21711

Gene Structure 2967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgaataatgtgctagtcaatgaatctgctcaccaggaatcagttcgggacttaagcttctataggagtaatttgaagttttgttcatgttcggatgatactactgttaaaattggggattttgaacagtgccaacaagagcagacattgactggccatggttggaatgtgaagagtgttgactggctcttatttccactgctcatcttctacttgctattcaatctctcctgtgcagctgaagctgaagatgaaaaaaatgtcactaacattggagcaatcattgatgttactattgcaaaactccggtgggcggcagccagtgaccggaatcctgcgaccggtgacaggattccggcgaaagttggccgaattccggccgccggtgaccagattcctgcgactggtgaccggattccggccgccgctgtggtccaaattcaccgaatcgactgccctcaacctcccttcaagcctcttcgacgtctcgacccaagtcttccagaacttgacccggttctttttcttcttctaattcaaataatcacatgccttgccgaggccggcgagaaccttgttggcgttgttgtggaggtcagtggagaaggaagcggtgttgattctgtcgtggacgaaggagaaggatcgggggatggagggattgggctcggaaggggagaggcaagagagaataggctggaggatgaagaaggtggagccgatgagaatgccaacaaggataaagaggaggctcgattgcttgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

255

Amino Acids

27.53

Weight (kDa)

4.48

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	10 - 62	4e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	487
AciI	CCGC	5 cut(s)	314, 381, 423, 426, 612
AclWI	GGATC	1 cut(s)	652
AcoI	YGGCCR	4 cut(s)	154, 367, 378, 420
AcsI	RAATTY	2 cut(s)	372, 438
AcuI	CTGAAG	2 cut(s)	261, 267
AcyI	GRCGYC	1 cut(s)	484
AfiI	CCNNNNNNNGG	9 cut(s)	313, 327, 341, 348, 376, 383, 404, 418, 559
AflII	CTTAAG	1 cut(s)	52
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	5 cut(s)	76, 125, 223, 472, 539
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	57, 239, 245
AluI	AGCT	3 cut(s)	57, 239, 245
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	652
AoxI	GGCC	5 cut(s)	154, 367, 378, 420, 561
ApeKI	GCWGC	2 cut(s)	236, 317
ApoI	RAATTY	2 cut(s)	372, 438
AsiGI	ACCGGT	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	5 cut(s)	23, 356, 398, 419, 434
AvaII	GGWCC	1 cut(s)	433
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	248, 329
BccI	CCATC	1 cut(s)	647
BcgI	CGANNNNNNTGC	4 cut(s)	435, 469, 710, 744
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	61
BfrI	CTTAAG	1 cut(s)	52
BisI	GCNGC	6 cut(s)	237, 315, 318, 381, 423, 426
BlsI	GCNGC	6 cut(s)	238, 316, 319, 382, 424, 427
Bme1390I	CCNGG	2 cut(s)	35, 515
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	718
BmrFI	CCNGG	2 cut(s)	35, 515
BoxI	GACNNNNGTC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	157, 558
BsaWI	WCCGGW	4 cut(s)	306, 327, 341, 411
Bsc4I	CCNNNNNNNGG	9 cut(s)	313, 327, 341, 348, 376, 383, 404, 418, 559
Bse118I	RCCGGY	3 cut(s)	341, 383, 563
Bse1I	ACTGG	4 cut(s)	157, 188, 321, 409
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	157, 558
BseGI	GGATG	3 cut(s)	100, 658, 709
BseLI	CCNNNNNNNGG	9 cut(s)	313, 327, 341, 348, 376, 383, 404, 418, 559
BseNI	ACTGG	4 cut(s)	157, 188, 321, 409
BseRI	GAGGAG	1 cut(s)	761
BseX3I	CGGCCG	2 cut(s)	378, 420
BseXI	GCAGC	2 cut(s)	248, 329
BsgI	GTGCAG	1 cut(s)	255
Bsh1285I	CGRYCG	3 cut(s)	342, 381, 423
BshFI	GGCC	5 cut(s)	156, 369, 380, 422, 563
BshTI	ACCGGT	1 cut(s)	341
BsiEI	CGRYCG	3 cut(s)	342, 381, 423
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	9 cut(s)	313, 327, 341, 348, 376, 383, 404, 418, 559
BsmAI	GTCTC	1 cut(s)	491
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	5 cut(s)	156, 369, 380, 422, 563
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp143I	GATC	1 cut(s)	644
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	5 cut(s)	314, 381, 423, 426, 612
BspANI	GGCC	5 cut(s)	156, 369, 380, 422, 563
BspLI	GGNNCC	1 cut(s)	718
BspPI	GGATC	1 cut(s)	652
BspTI	CTTAAG	1 cut(s)	52
BsrFI	RCCGGY	3 cut(s)	341, 383, 563
BsrI	ACTGG	4 cut(s)	157, 188, 321, 409
BssAI	RCCGGY	3 cut(s)	341, 383, 563
BssECI	CCNNGG	2 cut(s)	157, 558
BssMI	GATC	1 cut(s)	644
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	106, 129
Bst6I	CTCTTC	2 cut(s)	167, 483
BstACI	GRCGYC	1 cut(s)	484
BstAFI	CTTAAG	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	565
BstDSI	CCRYGG	1 cut(s)	157
BstEII	GGTNACC	2 cut(s)	386, 407
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	3 cut(s)	100, 658, 709
BstKTI	GATC	1 cut(s)	647
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	1 cut(s)	644
BstMCI	CGRYCG	3 cut(s)	342, 381, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	552
BstPAI	GACNNNNGTC	1 cut(s)	495
BstPI	GGTNACC	2 cut(s)	386, 407
BstSCI	CCNGG	2 cut(s)	33, 513
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	248, 329
BstV2I	GAAGAC	1 cut(s)	491
BstZI	CGGCCG	2 cut(s)	378, 420
BsuRI	GGCC	5 cut(s)	156, 369, 380, 422, 563
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	100, 658, 709
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	4 cut(s)	134, 197, 328, 604
Cac8I	GCNNGC	1 cut(s)	565
Cfr10I	RCCGGY	3 cut(s)	341, 383, 563
Cfr13I	GGNCC	1 cut(s)	433
CspAI	ACCGGT	1 cut(s)	341
CviAII	CATG	3 cut(s)	87, 158, 549
DpnI	GATC	1 cut(s)	646
DpnII	GATC	1 cut(s)	644
EaeI	YGGCCR	4 cut(s)	154, 367, 378, 420
EagI	CGGCCG	2 cut(s)	378, 420
Eam1104I	CTCTTC	2 cut(s)	167, 483
EarI	CTCTTC	2 cut(s)	167, 483
EclXI	CGGCCG	2 cut(s)	378, 420
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	433
Eco52I	CGGCCG	2 cut(s)	378, 420
Eco57I	CTGAAG	2 cut(s)	261, 267
Eco91I	GGTNACC	2 cut(s)	386, 407
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO65I	GGTNACC	2 cut(s)	386, 407
EcoRI	GAATTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	3 cut(s)	90, 161, 552
FaiI	YATR	4 cut(s)	63, 88, 159, 550
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	86, 157, 548
Fnu4HI	GCNGC	6 cut(s)	237, 315, 318, 381, 423, 426
FokI	GGATG	3 cut(s)	107, 665, 716
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	6 cut(s)	237, 315, 318, 381, 423, 426
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	6 cut(s)	237, 315, 318, 381, 423, 426
GsuI	CTGGAG	1 cut(s)	719
HaeIII	GGCC	5 cut(s)	156, 369, 380, 422, 563
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	3 cut(s)	90, 161, 552
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	8 cut(s)	23, 38, 331, 352, 394, 415, 447, 620
HphI	GGTGA	5 cut(s)	23, 356, 398, 419, 434
Hpy166II	GTNNAC	2 cut(s)	181, 631
Hpy188I	TCNGA	2 cut(s)	94, 671
Hpy188III	TCNNGA	3 cut(s)	47, 488, 503
Hpy8I	GTNNAC	2 cut(s)	181, 631
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	6 cut(s)	478, 599, 629, 635, 666, 704
HpyCH4III	ACNGT	2 cut(s)	106, 129
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	2 cut(s)	236, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	484
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	3 cut(s)	90, 161, 552
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	644
LmnI	GCTCC	2 cut(s)	275, 716
Lsp1109I	GCAGC	2 cut(s)	248, 329
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	6 cut(s)	262, 289, 323, 344, 386, 407
MalI	GATC	1 cut(s)	646
MboI	GATC	1 cut(s)	644
MboII	GAAGA	8 cut(s)	184, 199, 260, 470, 491, 518, 521, 719
MhlI	GDGCHC	1 cut(s)	669
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	5 cut(s)	70, 111, 372, 438, 534
MluNI	TGGCCA	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	143
Mox20I	TGGCCA	1 cut(s)	156
MroNI	GCCGGC	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	2 cut(s)	53, 108
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	239, 428
MspCI	CTTAAG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	35, 515
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	242
NaeI	GCCGGC	1 cut(s)	565
NciI	CCSGG	1 cut(s)	515
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	644
NgoMIV	GCCGGC	1 cut(s)	563
NlaIII	CATG	3 cut(s)	90, 161, 552
NlaIV	GGNNCC	1 cut(s)	718
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	5 cut(s)	262, 323, 344, 386, 407
NspI	RCATGY	1 cut(s)	552
PctI	GAATGC	1 cut(s)	733
PdiI	GCCGGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	8 cut(s)	23, 38, 331, 352, 394, 415, 447, 620
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	6 cut(s)	238, 316, 319, 382, 424, 427
PshAI	GACNNNNGTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	33
PspEI	GGTNACC	2 cut(s)	386, 407
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	718
PspPI	GGNCC	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	53, 108
SatI	GCNGC	6 cut(s)	237, 315, 318, 381, 423, 426
Sau3AI	GATC	1 cut(s)	644
Sau96I	GGNCC	1 cut(s)	433
ScrFI	CCNGG	2 cut(s)	35, 515
SduI	GDGCHC	1 cut(s)	669
SetI	ASST	8 cut(s)	59, 241, 247, 466, 487, 576, 597, 715
SfcI	CTRYAG	1 cut(s)	61
SgrAI	CRCCGGYG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	5 cut(s)	70, 111, 372, 438, 534
SsiI	CCGC	5 cut(s)	314, 381, 423, 426, 612
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	33, 513
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	106, 129
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	4 cut(s)	450, 481, 489, 754
TasI	AATT	5 cut(s)	70, 111, 372, 438, 534
TauI	GCSGC	4 cut(s)	317, 383, 425, 428
TfiI	GAWTC	8 cut(s)	23, 38, 331, 352, 394, 415, 447, 620
Tru1I	TTAA	2 cut(s)	53, 108
Tru9I	TTAA	2 cut(s)	53, 108
TscAI	CASTG	4 cut(s)	134, 204, 328, 604
TseFI	GTSAC	5 cut(s)	262, 323, 344, 386, 407
TseI	GCWGC	2 cut(s)	236, 317
Tsp45I	GTSAC	5 cut(s)	262, 323, 344, 386, 407
TspDTI	ATGAA	5 cut(s)	17, 36, 75, 267, 720
TspRI	CASTG	4 cut(s)	134, 204, 328, 604
Vha464I	CTTAAG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	433
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	2 cut(s)	372, 438
XceI	RCATGY	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	14
ZraI	GACGTC	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.