Rmu_sc0001993.1_g000012

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001993.1
N/A
Physical Location & Seq
Forward (+)
36668 .. 42518
5851 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
atgaagcccagaaaaaccgccttggttggtcggaatctggaaaaatgtccagaaaactcgagctgctacactgaacttcaagcggcagattcttccttctccggccgagaagagatgatcgaccaccaccatagtgttaaggatgatgagacgcatcggtctgatttctgcgaaattgggagtttcgaatttccggaatattgtcttgattccattcttctgggcttggttattgtggtgtttggatggaaattgggggttttggatttctgggtttttgtgcttcatactggaccaggagttcttagcatggcaaatgcaggccccaataccaatggaagtcagttcttcatatgcacagtacagacgccatggctaaatgggaggcacgttgtgtttgggcaagttttggaaggcatggaaattgttaggctgatcgagtcgcaggagacagatagaggtgaccgtcctacaaagaaggtagtcattgctgactgcggagagcttccagtagcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

172

Amino Acids

19.14

Weight (kDa)

5.06

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 66 - 167 2.4e-25 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 157
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 3 cut(s) 18, 83, 498
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 394
AfaI GTAC 1 cut(s) 363
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 295
AleI CACNNNNGTG 1 cut(s) 132
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 2 cut(s) 63, 505
AluI AGCT 2 cut(s) 63, 505
Alw26I GTCTC 2 cut(s) 143, 443
Ama87I CYCGRG 1 cut(s) 58
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 2 cut(s) 103, 322
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 293, 323
AsuHPI GGTGA 1 cut(s) 473
AsuII TTCGAA 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 143, 443
BisI GCNGC 2 cut(s) 64, 84
BlsI GCNGC 2 cut(s) 65, 85
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 293, 323
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 21, 371
BsaWI WCCGGW 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 295, 509
Bse3DI GCAATG 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 21, 371
BseGI GGATG 2 cut(s) 148, 251
BseMI GCAATG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 295, 509
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 105, 324
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 2 cut(s) 102, 194
BsmAI GTCTC 2 cut(s) 143, 443
BsmBI CGTCTC 1 cut(s) 143
BsnI GGCC 2 cut(s) 105, 324
BsoBI CYCGRG 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 186
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 2 cut(s) 117, 435
Bsp19I CCATGG 1 cut(s) 371
BspACI CCGC 3 cut(s) 18, 83, 498
BspANI GGCC 2 cut(s) 105, 324
BspEI TCCGGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 325
BspT104I TTCGAA 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 2 cut(s) 295, 509
BssECI CCNNGG 2 cut(s) 21, 371
BssMI GATC 2 cut(s) 117, 435
BssNI GRCGYC 1 cut(s) 368
BssT1I CCWWGG 2 cut(s) 21, 371
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 361, 467
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 371
BstEII GGTNACC 1 cut(s) 461
BstF5I GGATG 2 cut(s) 148, 251
BstKTI GATC 2 cut(s) 120, 438
BstMAI GTCTC 2 cut(s) 143, 443
BstMBI GATC 2 cut(s) 117, 435
BstMCI CGRYCG 1 cut(s) 106
BstNI CCWGG 1 cut(s) 297
BstPI GGTNACC 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 220
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 2 cut(s) 105, 324
BtgI CCRYGG 1 cut(s) 371
BtsCI GGATG 2 cut(s) 148, 251
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 293, 323
CseI GACGC 2 cut(s) 160, 376
Csp6I GTAC 1 cut(s) 362
CviAII CATG 3 cut(s) 310, 372, 418
CviJI RGCY 9 cut(s) 7, 63, 105, 225, 324, 376, 433, 505, 515
CviKI_1 RGCY 9 cut(s) 7, 63, 105, 225, 324, 376, 433, 505, 515
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 305
DpnI GATC 2 cut(s) 119, 437
DpnII GATC 2 cut(s) 117, 435
DraIII CACNNNGTG 1 cut(s) 394
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 21, 371
Eco47I GGWCC 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 58
Eco91I GGTNACC 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 2 cut(s) 21, 371
ErhI CCWWGG 2 cut(s) 21, 371
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 3 cut(s) 313, 375, 421
FaiI YATR 7 cut(s) 132, 288, 311, 353, 355, 373, 419
FatI CATG 3 cut(s) 309, 371, 417
FauNDI CATATG 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 64, 84
FokI GGATG 2 cut(s) 155, 258
Fsp4HI GCNGC 2 cut(s) 64, 84
GluI GCNGC 2 cut(s) 64, 84
HaeIII GGCC 2 cut(s) 105, 324
HapII CCGG 2 cut(s) 102, 194
HgaI GACGC 2 cut(s) 160, 376
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 3 cut(s) 313, 375, 421
HinfI GANTC 4 cut(s) 34, 89, 209, 440
HpaII CCGG 2 cut(s) 102, 194
HphI GGTGA 1 cut(s) 473
Hpy188I TCNGA 2 cut(s) 33, 163
Hpy188III TCNNGA 4 cut(s) 38, 50, 194, 206
HpyAV CCTTC 3 cut(s) 106, 407, 472
HpyCH4III ACNGT 2 cut(s) 361, 467
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 320, 357
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 3 cut(s) 313, 375, 421
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 117, 435
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 163
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 461
MalI GATC 2 cut(s) 119, 437
MboI GATC 2 cut(s) 117, 435
MboII GAAGA 4 cut(s) 84, 122, 209, 340
MluCI AATT 4 cut(s) 174, 188, 251, 423
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 11
MnlI CCTC 2 cut(s) 378, 452
MroI TCCGGA 1 cut(s) 193
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 102, 194
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
NcoI CCATGG 1 cut(s) 371
NdeI CATATG 1 cut(s) 353
NdeII GATC 2 cut(s) 117, 435
NlaIII CATG 3 cut(s) 313, 375, 421
NlaIV GGNNCC 1 cut(s) 325
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 461
NspV TTCGAA 1 cut(s) 186
OliI CACNNNNGTG 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 58
PfeI GAWTC 3 cut(s) 34, 89, 209
PkrI GCNGC 2 cut(s) 65, 85
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 295
PspEI GGTNACC 1 cut(s) 461
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 2 cut(s) 293, 323
PspXI VCTCGAGB 1 cut(s) 58
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 64, 84
Sau3AI GATC 2 cut(s) 117, 435
Sau96I GGNCC 2 cut(s) 293, 323
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 297
SetI ASST 5 cut(s) 65, 393, 463, 483, 507
SfaNI GCATC 1 cut(s) 163
Sfr274I CTCGAG 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 4 cut(s) 174, 188, 251, 423
SsiI CCGC 3 cut(s) 18, 83, 498
SspI AATATT 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 2 cut(s) 21, 371
TaaI ACNGT 2 cut(s) 361, 467
TaiI ACGT 1 cut(s) 393
TaqI TCGA 4 cut(s) 59, 120, 186, 438
TaqII GACCGA 1 cut(s) 147
TasI AATT 4 cut(s) 174, 188, 251, 423
TatI WGTACW 1 cut(s) 361
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 3 cut(s) 34, 89, 209
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 3 cut(s) 17, 275, 340
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.