Rmu_sc0001997.1_g000012

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001997.1
N/A
Physical Location & Seq
Reverse (-)
58935 .. 60093
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
atggatgctttgcttcttgtttattcttactgtctcaaaggaatggtgccccaatacccagttttggtttataagaatcagccggaagataagtttttctttttttcttttggtcagagaagaaggcagaacgaactttacctctaccaacgagagtacgagtcatatgtcaagtcagccaaggatttctacatgtgggattgggttgcgctacccagatcctcgagtctctacgaggttctgcaggtgaagaacaacgtgtcacagacggagatcaagtcggcgtataggagcttggcgaagctgcaccacccggatgcctcgtcggaggccgaatcggaaggcttggatttcatcgagattccggagttaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

125

Amino Acids

14.83

Weight (kDa)

5.38

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 77 - 121 1.7e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AarI CACCTGC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 364
AclWI GGATC 1 cut(s) 213
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 64
AflIII ACRYGT 2 cut(s) 192, 258
AluBI AGCT 2 cut(s) 294, 304
AluI AGCT 2 cut(s) 294, 304
Alw26I GTCTC 2 cut(s) 38, 233
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 291
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 2 cut(s) 38, 233
BfmI CTRYAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 314
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 59
BseAI TCCGGA 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 10, 322
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 3 cut(s) 83, 314, 365
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 38, 233
BsnI GGCC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 2 cut(s) 218, 273
BspANI GGCC 1 cut(s) 332
BspEI TCCGGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 218, 273
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 32
BstF5I GGATG 2 cut(s) 10, 322
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 221, 276
BstMAI GTCTC 2 cut(s) 38, 233
BstMBI GATC 2 cut(s) 218, 273
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 2 cut(s) 10, 322
BveI ACCTGC 1 cut(s) 235
CfoI GCGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 193
CviJI RGCY 6 cut(s) 82, 179, 294, 304, 332, 345
CviKI_1 RGCY 6 cut(s) 82, 179, 294, 304, 332, 345
CviQI GTAC 1 cut(s) 157
DpnI GATC 2 cut(s) 220, 275
DpnII GATC 2 cut(s) 218, 273
Eco130I CCWWGG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 196
FaiI YATR 5 cut(s) 72, 166, 168, 194, 288
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 1 cut(s) 192
FauNDI CATATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 2 cut(s) 17, 329
Fsp4HI GCNGC 1 cut(s) 305
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 305
HaeIII GGCC 1 cut(s) 332
HapII CCGG 3 cut(s) 83, 314, 365
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 5 cut(s) 76, 161, 226, 335, 361
HpaII CCGG 3 cut(s) 83, 314, 365
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 117, 328, 340, 377
Hpy188III TCNNGA 2 cut(s) 358, 365
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 117, 335
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 244, 307
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 209
Kpn2I TCCGGA 1 cut(s) 364
Kzo9I GATC 2 cut(s) 218, 273
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 5 cut(s) 72, 96, 229, 230, 327
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 307
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 261
MalI GATC 2 cut(s) 220, 275
MboI GATC 2 cut(s) 218, 273
MboII GAAGA 3 cut(s) 98, 132, 262
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 51
MlyI GAGTC 2 cut(s) 170, 235
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 5 cut(s) 152, 229, 232, 322, 331
MroI TCCGGA 1 cut(s) 364
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 3 cut(s) 83, 314, 365
MspR9I CCNGG 1 cut(s) 314
NciI CCSGG 1 cut(s) 314
NdeI CATATG 1 cut(s) 166
NdeII GATC 2 cut(s) 218, 273
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 235
PciI ACATGT 1 cut(s) 192
PfeI GAWTC 3 cut(s) 76, 335, 361
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 2 cut(s) 169, 234
PpsI GAGTC 2 cut(s) 169, 234
PscI ACATGT 1 cut(s) 192
PsiI TTATAA 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 48
PspXI VCTCGAGB 1 cut(s) 223
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PstI CTGCAG 1 cut(s) 246
PsuI RGATCY 1 cut(s) 218
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 315
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 218, 273
SchI GAGTC 2 cut(s) 170, 235
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 51
SetI ASST 6 cut(s) 144, 240, 249, 261, 296, 306
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 242
Sfr274I CTCGAG 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 224, 357
TfiI GAWTC 3 cut(s) 76, 335, 361
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 343
TspGWI ACGGA 1 cut(s) 284
XceI RCATGY 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.