Rmu_sc0002009.1_g000025

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002009.1
N/A
Physical Location & Seq
Forward (+)
148521 .. 151067
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
atgtcatctgtcttatcaagctacttgttcttatttttagtattcctgttgggtttggaatcaggtcagagggagaagagggttgctagctataaggtgtacactgtggaggggaagctgaaagggactctcaggaagagctgcaggtggctcaaggagacctgttatagagtggtctatagccgcttgcattgggatttacctgattctaggaaagagattcatctactgatttcagacatctttccaatgcctattgaacatgcgaggaaaactagctgcttgggaatatccatttgttccaatcaggaagatgaagctgaaggtcaagaaggagctttcaatgacaatactaaatcaactgatactttggctttccagcaaaagcatgagtaccgccattggagccaagctttgaaacgaaagacatccacttttgagatggttattcctgaatttcctggcataggccatgtttgtgaggatgcccctgttggcagagccgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

169

Amino Acids

19.41

Weight (kDa)

7.67

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 23 - 60 2.9e-18 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 135
Acc36I ACCTGC 1 cut(s) 135
AciI CCGC 2 cut(s) 184, 397
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 2 cut(s) 101, 395
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 3 cut(s) 260, 343, 418
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 8 cut(s) 21, 90, 118, 141, 279, 320, 338, 413
AluI AGCT 8 cut(s) 21, 90, 118, 141, 279, 320, 338, 413
Alw26I GTCTC 1 cut(s) 152
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 141, 279
ApoI RAATTY 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 128, 266
BccI CCATC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 3 cut(s) 87, 210, 276
BfmI CTRYAG 2 cut(s) 142, 178
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 3 cut(s) 142, 184, 280
BlsI GCNGC 3 cut(s) 143, 185, 281
Bme1390I CCNGG 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 475
BmtI GCTAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 467
BseBI CCWGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 428, 490
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 128, 266
BshFI GGCC 1 cut(s) 471
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 471
Bso31I GGTCTC 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 99
BspACI CCGC 2 cut(s) 184, 397
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 135
BspOI GCTAGC 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 71, 131
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 88, 188
BstDEI CTNAG 1 cut(s) 131
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 428, 490
BstMAI GTCTC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 2 cut(s) 142, 178
BstV1I GCAGC 2 cut(s) 128, 266
BsuRI GGCC 1 cut(s) 471
BtsCI GGATG 2 cut(s) 428, 490
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 88, 188
Csp6I GTAC 2 cut(s) 100, 394
CviAII CATG 3 cut(s) 263, 389, 473
CviQI GTAC 2 cut(s) 100, 394
DdeI CTNAG 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 71, 131
EarI CTCTTC 2 cut(s) 71, 131
Eco31I GGTCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 342
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 460
FaeI CATG 3 cut(s) 266, 392, 476
FaiI YATR 7 cut(s) 93, 168, 180, 264, 390, 467, 474
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 262, 388, 472
Fnu4HI GCNGC 3 cut(s) 142, 184, 280
FokI GGATG 2 cut(s) 415, 497
Fsp4HI GCNGC 3 cut(s) 142, 184, 280
FspBI CTAG 3 cut(s) 87, 210, 276
GluI GCNGC 3 cut(s) 142, 184, 280
HaeIII GGCC 1 cut(s) 471
Hin1II CATG 3 cut(s) 266, 392, 476
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 4 cut(s) 59, 127, 206, 220
Hpy166II GTNNAC 2 cut(s) 100, 102
Hpy188I TCNGA 2 cut(s) 69, 238
Hpy188III TCNNGA 4 cut(s) 133, 308, 329, 452
Hpy8I GTNNAC 2 cut(s) 100, 102
HpyAV CCTTC 2 cut(s) 317, 326
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 144, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 3 cut(s) 266, 392, 476
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 335, 405
Lsp1109I GCAGC 2 cut(s) 128, 266
LweI GCATC 1 cut(s) 475
MaeI CTAG 3 cut(s) 87, 210, 276
MboII GAAGA 3 cut(s) 88, 148, 323
MluCI AATT 1 cut(s) 455
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 5 cut(s) 63, 72, 103, 261, 475
MslI CAYNNNNRTG 1 cut(s) 477
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 405
NheI GCTAGC 1 cut(s) 86
NlaIII CATG 3 cut(s) 266, 392, 476
NlaIV GGNNCC 1 cut(s) 407
NspI RCATGY 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 3 cut(s) 59, 206, 220
PkrI GCNGC 3 cut(s) 143, 185, 281
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 146
RsaI GTAC 2 cut(s) 101, 395
RsaNI GTAC 2 cut(s) 100, 394
RseI CAYNNNNRTG 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 131
SatI GCNGC 3 cut(s) 142, 184, 280
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 462
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 2 cut(s) 142, 178
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 455
SsiI CCGC 2 cut(s) 184, 397
SspMI CTAG 3 cut(s) 87, 210, 276
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 106
TasI AATT 1 cut(s) 455
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 3 cut(s) 59, 206, 220
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 141, 279
TspDTI ATGAA 2 cut(s) 212, 330
TspRI CASTG 1 cut(s) 109
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XspI CTAG 3 cut(s) 87, 210, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.