Rmu_sc0002011.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002011.1
N/A
Physical Location & Seq
Forward (+)
50079 .. 51708
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
atgagatcttcgacgacctctttggagacctccggcaaggttttcagagaagtccggtgggcggccaccggtgaccggaatctagctggcggtgaccggagtcctgtggccggtgatgggactccgacgaagtctcatatggcctctctctctctctctctctctctctatgtaacaaaggggcccaaggaatcctggataaattttcttaagcctagccaggacgtgctaactgttgagcaagctcaacctttgaaagcaaatagagcagccttgaaggcaaataaggtgaaagctgtcatcctaatgattcgtcatatggatgattcgctccaatacgagtatctaaatgaagaaaaacccagaaggctatgggtctcactcgaagaacgctctagaaacgtttgtgactccctgcttcctgacttagaagtgagatggcataatcaccacttctgtgatttcaagacagttcttgattacaactcggaagaactttgcattaaatccttaatggaattctatgaaaaagatatcacagatgcgatgttgattgagaggactctctctaccttccatgtctctactttgatggttgctaagaactatcgaatcaatgttactataggatggatcacaaggtttcgtgagctcattggagccatgaatctcacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

225

Amino Acids

25.76

Weight (kDa)

8.39

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 62, 90
AclI AACGTT 1 cut(s) 402
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 2 cut(s) 63, 108
AcsI RAATTY 2 cut(s) 202, 518
AfiI CCNNNNNNNGG 4 cut(s) 61, 75, 110, 117
AflII CTTAAG 1 cut(s) 209
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 3 cut(s) 256, 277, 466
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 194, 219
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 4 cut(s) 86, 245, 296, 652
AluI AGCT 4 cut(s) 86, 245, 296, 652
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 4 cut(s) 20, 138, 382, 586
AlwI GGATC 1 cut(s) 641
AoxI GGCC 4 cut(s) 63, 108, 141, 182
ApaI GGGCCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 2 cut(s) 202, 518
ArsI GACNNNNNNTTYG 1 cut(s) 36
AsiGI ACCGGT 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 182, 183
AsuHPI GGTGA 5 cut(s) 83, 104, 125, 301, 440
BaeGI GKGCMC 1 cut(s) 186
BanII GRGCYC 2 cut(s) 186, 654
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 1 cut(s) 281
BccI CCATC 4 cut(s) 110, 432, 586, 624
BciT130I CCWGG 2 cut(s) 196, 221
BcoDI GTCTC 4 cut(s) 20, 138, 382, 586
BfaI CTAG 3 cut(s) 83, 216, 396
BfmI CTRYAG 1 cut(s) 624
BfrI CTTAAG 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 5
BisI GCNGC 2 cut(s) 63, 270
BlsI GCNGC 2 cut(s) 64, 271
Bme1390I CCNGG 2 cut(s) 196, 221
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 182, 183
BmiI GGNNCC 3 cut(s) 183, 184, 661
BmrFI CCNGG 2 cut(s) 196, 221
BmsI GCATC 1 cut(s) 532
BoxI GACNNNNGTC 1 cut(s) 99
BsaI GGTCTC 2 cut(s) 20, 382
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 4 cut(s) 54, 68, 75, 96
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 75, 110, 117
Bse118I RCCGGY 2 cut(s) 68, 110
BseBI CCWGG 2 cut(s) 196, 221
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 300, 328, 635
BseLI CCNNNNNNNGG 4 cut(s) 61, 75, 110, 117
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 281
BshFI GGCC 4 cut(s) 65, 110, 143, 184
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 654
BsiSI CCGG 6 cut(s) 33, 55, 69, 76, 97, 111
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 4 cut(s) 61, 75, 110, 117
BsmAI GTCTC 4 cut(s) 20, 138, 382, 586
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 4 cut(s) 65, 110, 143, 184
Bso31I GGTCTC 2 cut(s) 20, 382
Bsp120I GGGCCC 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 186, 654
Bsp143I GATC 2 cut(s) 5, 633
BspACI CCGC 2 cut(s) 62, 90
BspANI GGCC 4 cut(s) 65, 110, 143, 184
BspLI GGNNCC 3 cut(s) 183, 184, 661
BspPI GGATC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 2 cut(s) 20, 382
BsrFI RCCGGY 2 cut(s) 68, 110
BssAI RCCGGY 2 cut(s) 68, 110
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 5, 633
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 196, 221
Bst4CI ACNGT 2 cut(s) 235, 472
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 88, 243
BstDEI CTNAG 2 cut(s) 427, 600
BstEII GGTNACC 2 cut(s) 71, 92
BstF5I GGATG 3 cut(s) 300, 328, 635
BstKTI GATC 2 cut(s) 8, 636
BstMAI GTCTC 4 cut(s) 20, 138, 382, 586
BstMBI GATC 2 cut(s) 5, 633
BstMWI GCNNNNNNNGC 2 cut(s) 266, 278
BstNI CCWGG 2 cut(s) 196, 221
BstPAI GACNNNNGTC 1 cut(s) 99
BstPI GGTNACC 2 cut(s) 71, 92
BstSCI CCNGG 2 cut(s) 194, 219
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 4 cut(s) 65, 110, 143, 184
BtgZI GCGATG 1 cut(s) 560
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 3 cut(s) 300, 328, 635
Cac8I GCNNGC 2 cut(s) 88, 243
Cfr10I RCCGGY 2 cut(s) 68, 110
Cfr13I GGNCC 2 cut(s) 182, 183
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 2 cut(s) 578, 664
DdeI CTNAG 2 cut(s) 427, 600
DpnI GATC 2 cut(s) 7, 635
DpnII GATC 2 cut(s) 5, 633
EaeI YGGCCR 2 cut(s) 63, 108
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 2 cut(s) 186, 654
Eco31I GGTCTC 2 cut(s) 20, 382
Eco32I GATATC 1 cut(s) 535
Eco53kI GAGCTC 1 cut(s) 652
Eco91I GGTNACC 2 cut(s) 71, 92
EcoICRI GAGCTC 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 182
EcoO65I GGTNACC 2 cut(s) 71, 92
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 194, 219
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 2 cut(s) 186, 654
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 581, 667
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 577, 663
FauNDI CATATG 2 cut(s) 138, 318
Fnu4HI GCNGC 2 cut(s) 63, 270
FokI GGATG 3 cut(s) 287, 335, 642
FriOI GRGCYC 2 cut(s) 186, 654
Fsp4HI GCNGC 2 cut(s) 63, 270
FspBI CTAG 3 cut(s) 83, 216, 396
GluI GCNGC 2 cut(s) 63, 270
HaeIII GGCC 4 cut(s) 65, 110, 143, 184
HapII CCGG 6 cut(s) 33, 55, 69, 76, 97, 111
Hin1II CATG 2 cut(s) 581, 667
HpaII CCGG 6 cut(s) 33, 55, 69, 76, 97, 111
HphI GGTGA 5 cut(s) 83, 104, 125, 301, 440
Hpy188I TCNGA 3 cut(s) 47, 126, 490
Hpy188III TCNNGA 5 cut(s) 396, 422, 466, 476, 647
Hpy99I CGWCG 2 cut(s) 16, 130
HpyAV CCTTC 3 cut(s) 271, 360, 583
HpyCH4III ACNGT 2 cut(s) 235, 472
HpyCH4IV ACGT 2 cut(s) 225, 402
HpyCH4V TGCA 1 cut(s) 501
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 278
HpyF3I CTNAG 2 cut(s) 427, 600
HpySE526I ACGT 2 cut(s) 225, 402
Hsp92II CATG 2 cut(s) 581, 667
Kzo9I GATC 2 cut(s) 5, 633
LmnI GCTCC 2 cut(s) 336, 659
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 532
MaeI CTAG 3 cut(s) 83, 216, 396
MaeII ACGT 2 cut(s) 225, 402
MaeIII GTNAC 5 cut(s) 71, 92, 172, 407, 619
MalI GATC 2 cut(s) 7, 635
MboI GATC 2 cut(s) 5, 633
MboII GAAGA 3 cut(s) 365, 398, 503
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 2 cut(s) 186, 654
MluCI AATT 2 cut(s) 202, 518
MlyI GAGTC 4 cut(s) 109, 115, 404, 556
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 28, 40, 154, 552
MseI TTAA 4 cut(s) 210, 504, 512, 676
MslI CAYNNNNRTG 3 cut(s) 305, 321, 456
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 6 cut(s) 33, 55, 69, 76, 97, 111
MspR9I CCNGG 2 cut(s) 196, 221
MvaI CCWGG 2 cut(s) 196, 221
MwoI GCNNNNNNNGC 2 cut(s) 266, 278
NdeI CATATG 2 cut(s) 138, 318
NdeII GATC 2 cut(s) 5, 633
NlaIII CATG 2 cut(s) 581, 667
NlaIV GGNNCC 3 cut(s) 183, 184, 661
NmuCI GTSAC 3 cut(s) 71, 92, 407
OliI CACNNNNGTG 1 cut(s) 456
PfeI GAWTC 6 cut(s) 79, 191, 310, 326, 612, 667
PflFI GACNNNGTC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 194
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 2 cut(s) 64, 271
PleI GAGTC 4 cut(s) 108, 115, 404, 556
PpsI GAGTC 4 cut(s) 108, 115, 404, 556
PshAI GACNNNNGTC 1 cut(s) 99
Psp124BI GAGCTC 1 cut(s) 654
Psp1406I AACGTT 1 cut(s) 402
Psp6I CCWGG 2 cut(s) 194, 219
PspEI GGTNACC 2 cut(s) 71, 92
PspGI CCWGG 2 cut(s) 194, 219
PspN4I GGNNCC 3 cut(s) 183, 184, 661
PspOMI GGGCCC 1 cut(s) 182
PspPI GGNCC 2 cut(s) 182, 183
PsuI RGATCY 1 cut(s) 5
PsyI GACNNNGTC 1 cut(s) 130
RseI CAYNNNNRTG 3 cut(s) 305, 321, 456
SacI GAGCTC 1 cut(s) 654
SaqAI TTAA 4 cut(s) 210, 504, 512, 676
SatI GCNGC 2 cut(s) 63, 270
Sau3AI GATC 2 cut(s) 5, 633
Sau96I GGNCC 2 cut(s) 182, 183
SchI GAGTC 4 cut(s) 109, 115, 404, 556
ScrFI CCNGG 2 cut(s) 196, 221
SduI GDGCHC 2 cut(s) 186, 654
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 1 cut(s) 624
SgrAI CRCCGGYG 1 cut(s) 68
SmiMI CAYNNNNRTG 3 cut(s) 305, 321, 456
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 202, 518
SsiI CCGC 2 cut(s) 62, 90
SspMI CTAG 3 cut(s) 83, 216, 396
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 194, 219
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 235, 472
TaiI ACGT 2 cut(s) 228, 405
TaqI TCGA 3 cut(s) 11, 384, 610
TasI AATT 2 cut(s) 202, 518
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 6 cut(s) 79, 191, 310, 326, 612, 667
Tru1I TTAA 4 cut(s) 210, 504, 512, 676
Tru9I TTAA 4 cut(s) 210, 504, 512, 676
TseFI GTSAC 3 cut(s) 71, 92, 407
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 3 cut(s) 71, 92, 407
TspDTI ATGAA 2 cut(s) 366, 540
Tth111I GACNNNGTC 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 209
XapI RAATTY 2 cut(s) 202, 518
XbaI TCTAGA 1 cut(s) 395
XspI CTAG 3 cut(s) 83, 216, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.