Rmu_sc0002014.1_g000045

DNA-directed primase polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002014.1
N/A
Physical Location & Seq
Forward (+)
166989 .. 168735
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
atggaactccgagcagcaaccgaagaagactgggtctgggtctgtgaccgaccagcaaccgaagcggctgagattctgagatttttcttccctcgctctcgatctggtccgacttgtgaagaagagcagacgagaatcaaaggaaccgaagaagaccagcaatcgaagaggcgactgcgatctgggaatcgttgttttcgtttagctctatcatcaaaggcagggaagaattcagtgcttctacctactgggcgcttcaaagctaaggacatgatgtgcttctttaacgatgataaatcttatgatcaaagttatggtttccaacagcagtctgaagaggagatgttcatggtgtctttgatccgcaatttggaagttgattgtgagaagctcctagtctgcaaatctgatcttgattgtataaagaccctgcattttgatacagagggtattccggagcaacatactgctaaagactgtggctatttcataatgagatacatgaaggacatagcggaggataagaacttagattttttcagcaaggtaactaaaactgtgtttaattattgcttaattaatgcattagattggactattgtcatatggtattgtggatttttcaccaacttaatctggtttgctggaatattgtcatctgatattgctctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

224

Amino Acids

26.1

Weight (kDa)

5.15

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 454
AciI CCGC 3 cut(s) 65, 364, 515
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 3 cut(s) 206, 263, 391
AluI AGCT 3 cut(s) 206, 263, 391
AlwI GGATC 1 cut(s) 355
Aor13HI TCCGGA 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 229
AseI ATTAAT 1 cut(s) 579
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 616
AvaII GGWCC 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 33, 159
BbvI GCAGC 1 cut(s) 26
BclI TGATCA 1 cut(s) 304
BfaI CTAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 256
BisI GCNGC 2 cut(s) 15, 66
BlsI GCNGC 2 cut(s) 16, 67
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 145
BmrI ACTGGG 2 cut(s) 40, 258
BmuI ACTGGG 2 cut(s) 40, 258
BoxI GACNNNNGTC 1 cut(s) 599
BpiI GAAGAC 2 cut(s) 33, 159
Bpu10I CCTNAGC 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 35, 253
BseAI TCCGGA 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 60, 68
BseNI ACTGG 2 cut(s) 35, 253
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 370
Bsp13I TCCGGA 1 cut(s) 454
Bsp143I GATC 5 cut(s) 101, 179, 304, 360, 409
BspACI CCGC 3 cut(s) 65, 364, 515
BspCNI CTCAG 2 cut(s) 61, 69
BspEI TCCGGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 117
BsrI ACTGG 2 cut(s) 35, 253
BssMI GATC 5 cut(s) 101, 179, 304, 360, 409
Bst4CI ACNGT 2 cut(s) 479, 559
Bst6I CTCTTC 3 cut(s) 117, 161, 330
BstDEI CTNAG 4 cut(s) 69, 77, 264, 529
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 5 cut(s) 104, 182, 307, 363, 412
BstMBI GATC 5 cut(s) 101, 179, 304, 360, 409
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstPAI GACNNNNGTC 1 cut(s) 599
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 2 cut(s) 33, 159
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 3 cut(s) 271, 349, 502
CviJI RGCY 5 cut(s) 68, 206, 263, 391, 483
CviKI_1 RGCY 5 cut(s) 68, 206, 263, 391, 483
DdeI CTNAG 4 cut(s) 69, 77, 264, 529
DpnI GATC 5 cut(s) 103, 181, 306, 362, 411
DpnII GATC 5 cut(s) 101, 179, 304, 360, 409
Eam1104I CTCTTC 3 cut(s) 117, 161, 330
EarI CTCTTC 3 cut(s) 117, 161, 330
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 586
FaeI CATG 3 cut(s) 274, 352, 505
FatI CATG 3 cut(s) 270, 348, 501
FauNDI CATATG 1 cut(s) 605
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 15, 66
Fsp4HI GCNGC 2 cut(s) 15, 66
FspBI CTAG 1 cut(s) 395
GlaI GCGC 1 cut(s) 254
GluI GCNGC 2 cut(s) 15, 66
HaeII RGCGCY 1 cut(s) 256
HapII CCGG 1 cut(s) 455
HhaI GCGC 1 cut(s) 255
Hin1II CATG 3 cut(s) 274, 352, 505
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 3 cut(s) 73, 135, 187
HpaII CCGG 1 cut(s) 455
HphI GGTGA 1 cut(s) 616
Hpy188I TCNGA 7 cut(s) 11, 78, 111, 334, 409, 661, 674
Hpy188III TCNNGA 3 cut(s) 99, 413, 455
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 2 cut(s) 479, 559
HpyCH4V TGCA 3 cut(s) 402, 433, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 4 cut(s) 69, 77, 264, 529
Hsp92II CATG 3 cut(s) 274, 352, 505
HspAI GCGC 1 cut(s) 253
Kpn2I TCCGGA 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 5 cut(s) 101, 179, 304, 360, 409
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 396, 457
Lsp1109I GCAGC 1 cut(s) 26
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 2 cut(s) 44, 547
MalI GATC 5 cut(s) 103, 181, 306, 362, 411
MboI GATC 5 cut(s) 101, 179, 304, 360, 409
MluCI AATT 4 cut(s) 229, 367, 565, 576
MmeI TCCRAC 2 cut(s) 134, 346
MnlI CCTC 5 cut(s) 102, 162, 331, 439, 511
Mph1103I ATGCAT 1 cut(s) 586
MroI TCCGGA 1 cut(s) 454
MseI TTAA 5 cut(s) 285, 564, 575, 579, 632
MspI CCGG 1 cut(s) 455
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeI CATATG 1 cut(s) 605
NdeII GATC 5 cut(s) 101, 179, 304, 360, 409
NlaIII CATG 3 cut(s) 274, 352, 505
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 586
PacI TTAATTAA 1 cut(s) 579
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 3 cut(s) 73, 135, 187
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 16, 67
PshAI GACNNNNGTC 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 5 cut(s) 285, 564, 575, 579, 632
SatI GCNGC 2 cut(s) 15, 66
Sau3AI GATC 5 cut(s) 101, 179, 304, 360, 409
Sau96I GGNCC 1 cut(s) 107
SetI ASST 5 cut(s) 208, 247, 265, 393, 549
SinI GGWCC 1 cut(s) 107
Sse9I AATT 4 cut(s) 229, 367, 565, 576
SsiI CCGC 3 cut(s) 65, 364, 515
SspI AATATT 1 cut(s) 651
SspMI CTAG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 479, 559
TaqI TCGA 2 cut(s) 100, 164
TaqII GACCGA 1 cut(s) 63
TasI AATT 4 cut(s) 229, 367, 565, 576
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 3 cut(s) 73, 135, 187
Tru1I TTAA 5 cut(s) 285, 564, 575, 579, 632
Tru9I TTAA 5 cut(s) 285, 564, 575, 579, 632
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 337, 478, 518
TspRI CASTG 1 cut(s) 240
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 107
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 1 cut(s) 229
XspI CTAG 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.