Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002016.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

87096 .. 90029

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgccgactcatcgatcccactcacctcaaaccattcctcgaccaactctccgcctccatctccgacctcgagaagctcgtcgcttagaactcttacttcttccccatgtacaaagtccgatcattgctgaaaacgatctccagattgaggtgaggctcatggggtctggattgaaggggctctcgatccaattggagcctcgccttgaatatgttgccgtctctaccaccccctgcagccgttgccgccaattcttccaagaaatccatcgcgcccaagacatcaagatcctcatcaactccaccgagcctggagaagacgacagtgacaataacaacacgtcgtgtgaccaattcagccccctctgccacctcataccccacaggttcggccctgaaaacctcctcagggaggacgtgctcctagtcctcgagaatcacaacaatggcctatctttcacaacaatgttagtgtttcgattcgattgtgcctcttgctatcgcttcctcctctacatggcctccatagatgtcgtcacaacaagctttgctgctcctcttactctcgtagcaggtggtagcaccccggatctgggaaagattggctatggtcctatgtgcaggtcctctcaatcttttctacttggcaaacctttgattgaggatgacaatgatgtgcctcttgtcactctgaagaagaagaccggtagaccgccgaaagtaagaacaagagccaacgtcccagtaactgcaattggaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

254

Amino Acids

28.32

Weight (kDa)

8.19

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	563
Acc36I	ACCTGC	2 cut(s)	563, 612
AccI	GTMKAC	1 cut(s)	709
AccII	CGCG	1 cut(s)	273
AciI	CCGC	3 cut(s)	52, 247, 713
AclWI	GGATC	4 cut(s)	9, 181, 283, 597
AcuI	CTGAAG	1 cut(s)	713
AdeI	CACNNNGTG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	6 cut(s)	148, 409, 412, 517, 592, 593
AflIII	ACRYGT	1 cut(s)	339
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	2 cut(s)	175, 209
AjiI	CACGTC	2 cut(s)	342, 418
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	2 cut(s)	77, 546
AluI	AGCT	2 cut(s)	77, 546
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	4 cut(s)	9, 181, 283, 597
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	2 cut(s)	69, 431
AoxI	GGCC	3 cut(s)	391, 448, 519
ApeKI	GCWGC	2 cut(s)	237, 551
AsiGI	ACCGGT	1 cut(s)	704
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	392, 611, 624
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	15, 163
AvaI	CYCGRG	2 cut(s)	69, 431
AvaII	GGWCC	2 cut(s)	611, 624
AxyI	CCTNAGG	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	324, 707
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	249, 538
BccI	CCATC	2 cut(s)	66, 276
BceAI	ACGGC	2 cut(s)	203, 225
BciT130I	CCWGG	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	235
BfuAI	ACCTGC	2 cut(s)	563, 612
BisI	GCNGC	3 cut(s)	238, 247, 552
BlsI	GCNGC	3 cut(s)	239, 248, 553
Bme1390I	CCNGG	2 cut(s)	312, 587
Bme18I	GGWCC	2 cut(s)	611, 624
BmeT110I	CYCGRG	2 cut(s)	69, 431
BmgBI	CACGTC	2 cut(s)	342, 418
BmgT120I	GGNCC	3 cut(s)	392, 611, 624
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	312, 587
BmrI	ACTGGG	1 cut(s)	737
BmuI	ACTGGG	1 cut(s)	737
BpiI	GAAGAC	2 cut(s)	324, 707
BpmI	CTGGAG	2 cut(s)	125, 333
BpuMI	CCSGG	1 cut(s)	587
Bsa29I	ATCGAT	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	585
BsaWI	WCCGGW	1 cut(s)	704
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 506, 536
Bsc4I	CCNNNNNNNGG	6 cut(s)	148, 409, 412, 517, 592, 593
Bse118I	RCCGGY	1 cut(s)	704
Bse1I	ACTGG	1 cut(s)	743
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	312
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	1 cut(s)	670
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	6 cut(s)	148, 409, 412, 517, 592, 593
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	421
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	3 cut(s)	395, 500, 546
BseXI	GCAGC	2 cut(s)	249, 538
BsgI	GTGCAG	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	3 cut(s)	393, 450, 521
BshTI	ACCGGT	1 cut(s)	704
BshVI	ATCGAT	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	2 cut(s)	69, 431
BsiSI	CCGG	2 cut(s)	587, 705
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	6 cut(s)	148, 409, 412, 517, 592, 593
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	393, 450, 521
BsoBI	CYCGRG	2 cut(s)	69, 431
Bsp1286I	GDGCHC	2 cut(s)	183, 423
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	6 cut(s)	14, 120, 136, 186, 288, 589
BspACI	CCGC	3 cut(s)	52, 247, 713
BspANI	GGCC	3 cut(s)	393, 450, 521
BspCNI	CTCAG	1 cut(s)	420
BspDI	ATCGAT	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	239
BspMI	ACCTGC	2 cut(s)	563, 612
BspPI	GGATC	4 cut(s)	9, 181, 283, 597
BsrDI	GCAATG	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	704
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	743
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	6 cut(s)	14, 120, 136, 186, 288, 589
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	85, 407
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	6 cut(s)	17, 123, 139, 189, 291, 592
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	6 cut(s)	14, 120, 136, 186, 288, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 246, 366
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	310, 585
BstSFI	CTRYAG	1 cut(s)	235
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	249, 538
BstV2I	GAAGAC	2 cut(s)	324, 707
BstX2I	RGATCY	2 cut(s)	288, 589
BstYI	RGATCY	2 cut(s)	288, 589
Bsu15I	ATCGAT	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	393, 450, 521
BsuTUI	ATCGAT	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	254
BtrI	CACGTC	2 cut(s)	342, 418
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	2 cut(s)	563, 612
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	3 cut(s)	392, 611, 624
ClaI	ATCGAT	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	110
CspAI	ACCGGT	1 cut(s)	704
CviAII	CATG	3 cut(s)	107, 160, 517
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	2 cut(s)	85, 407
DpnI	GATC	6 cut(s)	16, 122, 138, 188, 290, 591
DpnII	GATC	6 cut(s)	14, 120, 136, 186, 288, 589
DraIII	CACNNNGTG	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	611, 624
Eco57I	CTGAAG	1 cut(s)	713
Eco81I	CCTNAGG	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	69, 431
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	3 cut(s)	110, 163, 520
FaiI	YATR	8 cut(s)	108, 161, 213, 377, 518, 527, 609, 617
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	3 cut(s)	106, 159, 516
FblI	GTMKAC	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	238, 247, 552
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	3 cut(s)	238, 247, 552
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	3 cut(s)	238, 247, 552
GsuI	CTGGAG	2 cut(s)	125, 333
HaeIII	GGCC	3 cut(s)	393, 450, 521
HapII	CCGG	2 cut(s)	587, 705
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	110, 163, 520
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	3 cut(s)	7, 436, 480
HpaII	CCGG	2 cut(s)	587, 705
HphI	GGTGA	2 cut(s)	15, 163
Hpy166II	GTNNAC	1 cut(s)	710
Hpy188I	TCNGA	3 cut(s)	65, 120, 693
Hpy188III	TCNNGA	6 cut(s)	71, 142, 168, 184, 286, 433
Hpy8I	GTNNAC	1 cut(s)	710
Hpy99I	CGWCG	2 cut(s)	84, 346
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	3 cut(s)	341, 417, 738
HpyCH4V	TGCA	3 cut(s)	237, 621, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 246, 366
HpyF3I	CTNAG	2 cut(s)	85, 407
HpySE526I	ACGT	3 cut(s)	341, 417, 738
Hsp92II	CATG	3 cut(s)	110, 163, 520
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	6 cut(s)	14, 120, 136, 186, 288, 589
LmnI	GCTCC	3 cut(s)	196, 426, 559
Lsp1109I	GCAGC	2 cut(s)	249, 538
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	3 cut(s)	341, 417, 738
MaeIII	GTNAC	5 cut(s)	326, 347, 535, 685, 745
MalI	GATC	6 cut(s)	16, 122, 138, 188, 290, 591
MboI	GATC	6 cut(s)	14, 120, 136, 186, 288, 589
MboII	GAAGA	6 cut(s)	92, 247, 329, 706, 709, 712
MfeI	CAATTG	2 cut(s)	191, 753
MflI	RGATCY	2 cut(s)	288, 589
MhlI	GDGCHC	2 cut(s)	183, 423
MluCI	AATT	4 cut(s)	191, 251, 353, 753
MmeI	TCCRAC	1 cut(s)	88
MslI	CAYNNNNRTG	2 cut(s)	444, 464
MspI	CCGG	2 cut(s)	587, 705
MspR9I	CCNGG	2 cut(s)	312, 587
MunI	CAATTG	2 cut(s)	191, 753
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	243, 246, 366
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	6 cut(s)	14, 120, 136, 186, 288, 589
NlaIII	CATG	3 cut(s)	110, 163, 520
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	4 cut(s)	326, 347, 535, 685
PaeR7I	CTCGAG	2 cut(s)	69, 431
PaqCI	CACCTGC	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	436, 480
PinAI	ACCGGT	1 cut(s)	704
PkrI	GCNGC	3 cut(s)	239, 248, 553
PpuMI	RGGWCCY	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	3 cut(s)	392, 611, 624
PspPPI	RGGWCCY	1 cut(s)	624
PstI	CTGCAG	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	288, 589
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	444, 464
SatI	GCNGC	3 cut(s)	238, 247, 552
Sau3AI	GATC	6 cut(s)	14, 120, 136, 186, 288, 589
Sau96I	GGNCC	3 cut(s)	392, 611, 624
ScrFI	CCNGG	2 cut(s)	312, 587
SduI	GDGCHC	2 cut(s)	183, 423
SfcI	CTRYAG	1 cut(s)	235
Sfr274I	CTCGAG	2 cut(s)	69, 431
SinI	GGWCC	2 cut(s)	611, 624
SlaI	CTCGAG	2 cut(s)	69, 431
SmiMI	CAYNNNNRTG	2 cut(s)	444, 464
SmlI	CTYRAG	2 cut(s)	69, 431
SmoI	CTYRAG	2 cut(s)	69, 431
Sse9I	AATT	4 cut(s)	191, 251, 353, 753
SsiI	CCGC	3 cut(s)	52, 247, 713
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	310, 585
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	3 cut(s)	344, 420, 741
TaqI	TCGA	7 cut(s)	13, 40, 70, 185, 432, 478, 483
TasI	AATT	4 cut(s)	191, 251, 353, 753
TatI	WGTACW	1 cut(s)	109
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	2 cut(s)	436, 480
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	4 cut(s)	326, 347, 535, 685
TseI	GCWGC	2 cut(s)	237, 551
Tsp45I	GTSAC	4 cut(s)	326, 347, 535, 685
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	611, 624
XagI	CCTNNNNNAGG	1 cut(s)	410
XhoI	CTCGAG	2 cut(s)	69, 431
XmiI	GTMKAC	1 cut(s)	709
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.