Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002019.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 422

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 287 bp

atgctgagacctccatcctacattattcaggtgattgacgtagtaaagcacaatgagaatggttctcctgtccggagacttaggaaaaagttaagaatagtccattcaaagaatatagcggggataagcttttggaacaagcacaaatgtcttcggaatgagcttggtagcttctgtaaggacattggaaaagttgaaccagattttctcaagtccttccagtttgaaaaaagattgatgccatcgacttggattgtcattagaattgatggttgccatttccacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

95

Amino Acids

11.2

Weight (kDa)

10.1

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thg1	PF04446	69 - 95	5.5e-06	tRNAHis guanylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	108, 197, 227
AluBI	AGCT	3 cut(s)	129, 163, 171
AluI	AGCT	3 cut(s)	129, 163, 171
Alw26I	GTCTC	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	143
BccI	CCATC	3 cut(s)	22, 250, 263
BcoDI	GTCTC	1 cut(s)	70
BmsI	GCATC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	220
BseAI	TCCGGA	1 cut(s)	72
BseGI	GGATG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	72
BspACI	CCGC	1 cut(s)	119
BspEI	TCCGGA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	5, 80
BstF5I	GGATG	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	14
CviJI	RGCY	3 cut(s)	129, 163, 171
CviKI_1	RGCY	3 cut(s)	129, 163, 171
DdeI	CTNAG	2 cut(s)	5, 80
FaiI	YATR	1 cut(s)	116
FauI	CCCGC	1 cut(s)	112
HapII	CCGG	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	127
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	39
HpyF3I	CTNAG	2 cut(s)	5, 80
HpySE526I	ACGT	1 cut(s)	39
Kpn2I	TCCGGA	1 cut(s)	72
LpnPI	CCDG	5 cut(s)	14, 81, 86, 213, 233
LweI	GCATC	1 cut(s)	228
MaeII	ACGT	1 cut(s)	39
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	1 cut(s)	264
MnlI	CCTC	1 cut(s)	21
MroI	TCCGGA	1 cut(s)	72
MseI	TTAA	1 cut(s)	92
MspI	CCGG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	92
SetI	ASST	6 cut(s)	13, 33, 42, 131, 165, 173
SfaNI	GCATC	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	119
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.