Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002030.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

152759 .. 153850

Gene Structure 1092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgaccaacctggacctcgagcaccaacccacccaagacctcaatacttcccaggacaacgacgacttcgactactccaaacgctcccagtggctccgcgccgccgtcctgggagccaacgacggtctgatctccaccgcgtcgttaatgatgggtgttggtgctgttaagcaggaccttaaagccatgatactaaccgggtttgccggactagtagccggtgcctgcagcatggccatcggagagtttgtctccgtttactcccagttggacatagaggtggcccaaatgaagagagacaacaacaagaagcaaaagagcccagtggtacacgtggtagaagacaaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagaagagaaggagaacttgccaaacccgttacgagcagacgaggagggagtagagaaggagaacttgccaaacccgttacaagcagcagttgcatcggctcttgcgttttcagtgggagcaatggtaccactgctagcagcctcgttcataagggagtatagggcgaggttgggagctgtggcggcggcagtgacattggctttgatggtgtttgggtggttgggagcagctttggggaaggcaccagttctgagatcaacgattagggttttggttggagggtggatggctatggctataacctttgggttaaccaagttgattgatctactggcccgtaagactagccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

363

Amino Acids

39.76

Weight (kDa)

4.44

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	32 - 113	2e-25	VIT family
VIT1	PF01988	242 - 351	6.4e-21	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	862
AccB1I	GGYRCC	3 cut(s)	221, 862, 979
AccII	CGCG	2 cut(s)	99, 140
AciI	CCGC	5 cut(s)	97, 102, 138, 920, 923
AcoI	YGGCCR	1 cut(s)	234
AcvI	CACGTG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	330, 864
AflIII	ACRYGT	1 cut(s)	331
AhlI	ACTAGT	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	9, 51, 108
AluBI	AGCT	2 cut(s)	914, 968
AluI	AGCT	2 cut(s)	914, 968
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	256, 291
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	3 cut(s)	234, 282, 1071
ApeKI	GCWGC	4 cut(s)	228, 821, 875, 965
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
Asp718I	GGTACC	1 cut(s)	862
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	4 cut(s)	13, 175, 283, 1072
AsuC2I	CCSGG	1 cut(s)	199
AsuNHI	GCTAGC	1 cut(s)	871
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	13, 175
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	3 cut(s)	221, 862, 979
BanII	GRGCYC	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	4 cut(s)	240, 833, 887, 977
BccI	CCATC	4 cut(s)	145, 245, 937, 1018
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	4 cut(s)	220, 254, 813, 847
BciT130I	CCWGG	3 cut(s)	11, 53, 110
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	256, 291
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	3 cut(s)	212, 872, 1083
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	7 cut(s)	102, 229, 822, 876, 921, 924, 966
BlsI	GCNGC	7 cut(s)	103, 230, 823, 877, 922, 925, 967
Bme1390I	CCNGG	4 cut(s)	11, 53, 110, 199
Bme18I	GGWCC	2 cut(s)	13, 175
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	4 cut(s)	13, 175, 283, 1072
BmiI	GGNNCC	5 cut(s)	95, 115, 223, 864, 981
BmrFI	CCNGG	4 cut(s)	11, 53, 110, 199
BmrI	ACTGGG	3 cut(s)	82, 259, 317
BmsI	GCATC	1 cut(s)	839
BmtI	GCTAGC	1 cut(s)	875
BmuI	ACTGGG	3 cut(s)	82, 259, 317
BpiI	GAAGAC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	51, 109
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 846, 876
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	6 cut(s)	88, 265, 323, 983, 1074, 1087
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	3 cut(s)	11, 53, 110
BseDI	CCNNGG	2 cut(s)	51, 109
BseGI	GGATG	1 cut(s)	1029
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	1 cut(s)	980
BseNI	ACTGG	6 cut(s)	88, 265, 323, 983, 1074, 1087
BseRI	GAGGAG	9 cut(s)	410, 458, 506, 554, 602, 650, 698, 746, 794
BseXI	GCAGC	4 cut(s)	240, 833, 887, 977
Bsh1236I	CGCG	2 cut(s)	99, 140
BshFI	GGCC	3 cut(s)	236, 284, 1073
BshNI	GGYRCC	3 cut(s)	221, 862, 979
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	198, 207, 219
BsmAI	GTCTC	2 cut(s)	256, 291
BsnI	GGCC	3 cut(s)	236, 284, 1073
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	24, 323
Bsp143I	GATC	3 cut(s)	129, 992, 1063
BspACI	CCGC	5 cut(s)	97, 102, 138, 920, 923
BspANI	GGCC	3 cut(s)	236, 284, 1073
BspCNI	CTCAG	1 cut(s)	981
BspFNI	CGCG	2 cut(s)	99, 140
BspLI	GGNNCC	5 cut(s)	95, 115, 223, 864, 981
BspMAI	CTGCAG	1 cut(s)	230
BspOI	GCTAGC	1 cut(s)	875
BspT107I	GGYRCC	3 cut(s)	221, 862, 979
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	6 cut(s)	88, 265, 323, 983, 1074, 1087
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	51, 109
BssMI	GATC	3 cut(s)	129, 992, 1063
Bst2UI	CCWGG	3 cut(s)	11, 53, 110
Bst4CI	ACNGT	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	226, 873
BstDEI	CTNAG	1 cut(s)	989
BstF5I	GGATG	1 cut(s)	1029
BstFNI	CGCG	2 cut(s)	99, 140
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	3 cut(s)	132, 995, 1066
BstMAI	GTCTC	2 cut(s)	256, 291
BstMBI	GATC	3 cut(s)	129, 992, 1063
BstMWI	GCNNNNNNNGC	2 cut(s)	827, 920
BstNI	CCWGG	3 cut(s)	11, 53, 110
BstSCI	CCNGG	4 cut(s)	9, 51, 108, 197
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	2 cut(s)	99, 140
BstV1I	GCAGC	4 cut(s)	240, 833, 887, 977
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	236, 284, 1073
BtsCI	GGATG	1 cut(s)	1029
BtsI	GCAGTG	2 cut(s)	866, 933
BtsIMutI	CAGTG	5 cut(s)	95, 330, 855, 866, 933
Cac8I	GCNNGC	2 cut(s)	226, 873
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	4 cut(s)	13, 175, 283, 1072
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	329, 863
CviAII	CATG	2 cut(s)	187, 232
CviQI	GTAC	2 cut(s)	329, 863
DdeI	CTNAG	1 cut(s)	989
DpnI	GATC	3 cut(s)	131, 994, 1065
DpnII	GATC	3 cut(s)	129, 992, 1063
EaeI	YGGCCR	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	13, 175
Eco72I	CACGTG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	9, 51, 108
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	2 cut(s)	190, 235
FaiI	YATR	7 cut(s)	188, 233, 275, 887, 897, 1031, 1037
FatI	CATG	2 cut(s)	186, 231
Fnu4HI	GCNGC	7 cut(s)	102, 229, 822, 876, 921, 924, 966
FokI	GGATG	1 cut(s)	1036
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	7 cut(s)	102, 229, 822, 876, 921, 924, 966
FspBI	CTAG	3 cut(s)	212, 872, 1083
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	7 cut(s)	102, 229, 822, 876, 921, 924, 966
HaeIII	GGCC	3 cut(s)	236, 284, 1073
HapII	CCGG	3 cut(s)	198, 207, 219
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	190, 235
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	1050
HindII	GTYRAC	1 cut(s)	1050
HpaI	GTTAAC	1 cut(s)	1050
HpaII	CCGG	3 cut(s)	198, 207, 219
Hpy166II	GTNNAC	3 cut(s)	259, 331, 1050
Hpy188I	TCNGA	3 cut(s)	129, 242, 990
Hpy8I	GTNNAC	3 cut(s)	259, 331, 1050
Hpy99I	CGWCG	3 cut(s)	65, 125, 145
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	228, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	827, 920
HpyF3I	CTNAG	1 cut(s)	989
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	190, 235
HspAI	GCGC	1 cut(s)	99
KpnI	GGTACC	1 cut(s)	866
KspAI	GTTAAC	1 cut(s)	1050
Kzo9I	GATC	3 cut(s)	129, 992, 1063
LmnI	GCTCC	6 cut(s)	89, 99, 113, 854, 911, 962
Lsp1109I	GCAGC	4 cut(s)	240, 833, 887, 977
LweI	GCATC	1 cut(s)	839
MaeI	CTAG	3 cut(s)	212, 872, 1083
MaeII	ACGT	1 cut(s)	333
MalI	GATC	3 cut(s)	131, 994, 1065
MboI	GATC	3 cut(s)	129, 992, 1063
MhlI	GDGCHC	2 cut(s)	24, 323
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	249, 994
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	4 cut(s)	146, 168, 180, 1049
MslI	CAYNNNNRTG	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	3 cut(s)	198, 207, 219
MspR9I	CCNGG	4 cut(s)	11, 53, 110, 199
MvaI	CCWGG	3 cut(s)	11, 53, 110
MvnI	CGCG	2 cut(s)	99, 140
MwoI	GCNNNNNNNGC	2 cut(s)	827, 920
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	3 cut(s)	129, 992, 1063
NheI	GCTAGC	1 cut(s)	871
NlaIII	CATG	2 cut(s)	190, 235
NlaIV	GGNNCC	5 cut(s)	95, 115, 223, 864, 981
NmuCI	GTSAC	1 cut(s)	928
PaeR7I	CTCGAG	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 839
PkrI	GCNGC	7 cut(s)	103, 230, 823, 877, 922, 925, 967
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	3 cut(s)	9, 51, 108
PspCI	CACGTG	1 cut(s)	334
PspGI	CCWGG	3 cut(s)	9, 51, 108
PspN4I	GGNNCC	5 cut(s)	95, 115, 223, 864, 981
PspPI	GGNCC	4 cut(s)	13, 175, 283, 1072
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	330, 864
RsaNI	GTAC	2 cut(s)	329, 863
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	146, 168, 180, 1049
SatI	GCNGC	7 cut(s)	102, 229, 822, 876, 921, 924, 966
Sau3AI	GATC	3 cut(s)	129, 992, 1063
Sau96I	GGNCC	4 cut(s)	13, 175, 283, 1072
ScrFI	CCNGG	4 cut(s)	11, 53, 110, 199
SduI	GDGCHC	2 cut(s)	24, 323
SfaNI	GCATC	1 cut(s)	839
SfcI	CTRYAG	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	2 cut(s)	13, 175
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	211
SsiI	CCGC	5 cut(s)	97, 102, 138, 920, 923
SspMI	CTAG	3 cut(s)	212, 872, 1083
StyD4I	CCNGG	4 cut(s)	9, 51, 108, 197
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	18, 69
TauI	GCSGC	3 cut(s)	104, 923, 926
Tru1I	TTAA	4 cut(s)	146, 168, 180, 1049
Tru9I	TTAA	4 cut(s)	146, 168, 180, 1049
TscAI	CASTG	5 cut(s)	95, 330, 855, 873, 933
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	4 cut(s)	228, 821, 875, 965
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	2 cut(s)	305, 874
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	5 cut(s)	95, 330, 855, 873, 933
VpaK11BI	GGWCC	2 cut(s)	13, 175
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	3 cut(s)	212, 872, 1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.