Rmu_sc0002031.1_g000022

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002031.1
N/A
Physical Location & Seq
Reverse (-)
77638 .. 80470
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1131 bp
atgattgaccatccctccacgcaccagaccaaagctatgacaaacaccttccctctctccaatttgactgccggcagatcaccgccacaactctttccattcgagctcaccaccccagagatctggaaacacatccactccaatccaaaccaccgacaaacaagaatggaatcgccgggcacttccacctcggaacgaaatcgctccaccaatttgtgcccatcctcctgggagcccgaacccactgctgcaaacatcgccgagcgacccacctccgagcagagatcagcgccatacgatccatggcaagccgccaccacgatctggcctctgaccccttactccaagcctacgctgccgccgaaatcctcctccccgcctgcgccgcttcctgagagtagagaagaaacatgccaagccccgaccaccgcaaagaagacagaatcgaaggtcccaagacccccatctcccgtccggcaacacctgccattcgtcgctgaggcgggaagccccgatcgacgaggaggcgccgccggacaagcgaccactgctccttcactctttccaaaccccagttttctctcttgttttctcggagcaagaacaaggacgctgagcaaacagagagagatcaagatcagaaacatggtgaaggataggaggattggtgtggccatggacttctcaaagagcagcaaaaacgctcttcaatgggccgtagacaacttggtcgacaaaggtgacaccctctgcatcatccacatcaacagcaacaaagtcgacgagtctcgcaacgtcctctgggccaaatctggttctcctcttattccattgtctgagtttagagagcctgaggttatgaaaaagtatggggtacaaactgacatggaagtgcttgatacactcgacactgcttctaggcagaaagaggtgagcattattacaaagctgtactggggagatgcaagggagaagcttcttgaagcagttgaggatctgaaattagactctctggtgatgggaagcagaggacttggtacccttaaaagggttatacttggaagtgtgagcgactatgtgatgacgaatgcttcaatccctgtgaccattgtcaaggaccttgaccattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

376

Amino Acids

41.64

Weight (kDa)

9.06

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 220 - 372 5.2e-29 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 492
AasI GACNNNNNNGTC 1 cut(s) 728
Acc36I ACCTGC 1 cut(s) 492
Acc65I GGTACC 1 cut(s) 1037
AccB1I GGYRCC 2 cut(s) 527, 1037
AccB7I CCANNNNNTGG 1 cut(s) 324
AccI GTMKAC 3 cut(s) 720, 732, 780
AciI CCGC 8 cut(s) 83, 312, 359, 377, 386, 429, 503, 531
AclWI GGATC 2 cut(s) 293, 1002
AcoI YGGCCR 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 3 cut(s) 876, 953, 1039
AfiI CCNNNNNNNGG 3 cut(s) 324, 1047, 1048
AgsI TTSAA 3 cut(s) 710, 983, 1095
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 4 cut(s) 35, 106, 949, 976
AluI AGCT 4 cut(s) 35, 106, 949, 976
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 792
AlwI GGATC 2 cut(s) 293, 1002
AoxI GGCC 4 cut(s) 326, 672, 714, 804
ApeKI GCWGC 3 cut(s) 248, 355, 693
Asp718I GGTACC 1 cut(s) 1037
AspLEI GCGC 3 cut(s) 292, 385, 530
AspS9I GGNCC 4 cut(s) 451, 714, 804, 1117
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 6 cut(s) 72, 100, 661, 752, 943, 1027
AvaII GGWCC 2 cut(s) 451, 1117
AxyI CCTNAGG 1 cut(s) 852
BaeGI GKGCMC 2 cut(s) 182, 221
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 2 cut(s) 527, 1037
BanII GRGCYC 2 cut(s) 108, 237
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 3 cut(s) 235, 342, 705
BccI CCATC 4 cut(s) 18, 229, 472, 1012
BceAI ACGGC 1 cut(s) 701
BcgI CGANNNNNNTGC 4 cut(s) 227, 261, 760, 794
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 792
BfaI CTAG 1 cut(s) 918
BfoI RGCGCY 2 cut(s) 293, 531
BfuAI ACCTGC 1 cut(s) 492
BglII AGATCT 1 cut(s) 120
BisI GCNGC 7 cut(s) 249, 312, 356, 359, 386, 531, 694
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 7 cut(s) 250, 313, 357, 360, 387, 532, 695
Bme1390I CCNGG 2 cut(s) 177, 229
Bme18I GGWCC 2 cut(s) 451, 1117
BmgT120I GGNCC 4 cut(s) 451, 714, 804, 1117
BmiI GGNNCC 4 cut(s) 234, 453, 529, 1039
BmrFI CCNGG 2 cut(s) 177, 229
BmrI ACTGGG 2 cut(s) 567, 964
BmsI GCATC 2 cut(s) 762, 952
BmuI ACTGGG 2 cut(s) 567, 964
BoxI GACNNNNGTC 1 cut(s) 1109
BpiI GAAGAC 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 614
BpuMI CCSGG 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 635
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 4 cut(s) 189, 228, 302, 675
BsaXI ACNNNNNCTCC 7 cut(s) 29, 122, 152, 535, 565, 652, 682
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 1047, 1048
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 573, 959
Bse21I CCTNAGG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 635
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 4 cut(s) 189, 228, 302, 675
BseGI GGATG 4 cut(s) 10, 132, 221, 756
BseJI GATNNNNATC 1 cut(s) 635
BseLI CCNNNNNNNGG 3 cut(s) 324, 1047, 1048
BseMII CTCAG 5 cut(s) 384, 489, 605, 828, 843
BseNI ACTGG 2 cut(s) 573, 959
BseRI GAGGAG 3 cut(s) 361, 537, 810
BseSI GKGCMC 2 cut(s) 182, 221
BseXI GCAGC 3 cut(s) 235, 342, 705
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 4 cut(s) 328, 674, 716, 806
BshNI GGYRCC 2 cut(s) 527, 1037
BsiEI CGRYCG 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 4 cut(s) 72, 176, 475, 534
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 3 cut(s) 324, 1047, 1048
BsmAI GTCTC 1 cut(s) 792
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 1093
BsnI GGCC 4 cut(s) 328, 674, 716, 806
Bsp1286I GDGCHC 4 cut(s) 108, 182, 221, 237
Bsp143I GATC 9 cut(s) 77, 120, 284, 298, 321, 514, 630, 636, 994
Bsp1720I GCTNAGC 1 cut(s) 614
Bsp19I CCATGG 2 cut(s) 302, 675
BspACI CCGC 8 cut(s) 83, 312, 359, 377, 386, 429, 503, 531
BspANI GGCC 4 cut(s) 328, 674, 716, 806
BspCNI CTCAG 5 cut(s) 385, 490, 606, 829, 844
BspLI GGNNCC 4 cut(s) 234, 453, 529, 1039
BspMI ACCTGC 1 cut(s) 492
BspPI GGATC 2 cut(s) 293, 1002
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 2 cut(s) 527, 1037
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 2 cut(s) 573, 959
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 189, 228, 302, 675
BssMI GATC 9 cut(s) 77, 120, 284, 298, 321, 514, 630, 636, 994
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 2 cut(s) 302, 675
Bst2UI CCWGG 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 1 cut(s) 528
BstAPI GCANNNNNTGC 1 cut(s) 484
BstC8I GCNNGC 3 cut(s) 73, 309, 381
BstDEI CTNAG 5 cut(s) 393, 498, 614, 837, 852
BstDSI CCRYGG 2 cut(s) 302, 675
BstF5I GGATG 4 cut(s) 10, 132, 221, 756
BstH2I RGCGCY 2 cut(s) 293, 531
BstHHI GCGC 3 cut(s) 292, 385, 530
BstKTI GATC 9 cut(s) 80, 123, 287, 301, 324, 517, 633, 639, 997
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 9 cut(s) 77, 120, 284, 298, 321, 514, 630, 636, 994
BstMCI CGRYCG 1 cut(s) 517
BstMWI GCNNNNNNNGC 6 cut(s) 257, 355, 385, 484, 539, 548
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 414
BstPAI GACNNNNGTC 1 cut(s) 1109
BstSCI CCNGG 2 cut(s) 175, 227
BstSLI GKGCMC 2 cut(s) 182, 221
BstV1I GCAGC 3 cut(s) 235, 342, 705
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 2 cut(s) 120, 994
BstXI CCANNNNNNTGG 2 cut(s) 123, 228
BstYI RGATCY 2 cut(s) 120, 994
Bsu36I CCTNAGG 1 cut(s) 852
BsuRI GGCC 4 cut(s) 328, 674, 716, 806
BtgI CCRYGG 2 cut(s) 302, 675
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 10, 132, 221, 756
BtsI GCAGTG 3 cut(s) 243, 546, 909
BtsIMutI CAGTG 3 cut(s) 243, 546, 909
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 3 cut(s) 73, 309, 381
CfoI GCGC 3 cut(s) 292, 385, 530
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 4 cut(s) 451, 714, 804, 1117
CseI GACGC 1 cut(s) 619
Csp6I GTAC 3 cut(s) 875, 952, 1038
CviAII CATG 5 cut(s) 303, 411, 646, 676, 886
CviQI GTAC 3 cut(s) 875, 952, 1038
DdeI CTNAG 5 cut(s) 393, 498, 614, 837, 852
DinI GGCGCC 1 cut(s) 529
DpnI GATC 9 cut(s) 79, 122, 286, 300, 323, 516, 632, 638, 996
DpnII GATC 9 cut(s) 77, 120, 284, 298, 321, 514, 630, 636, 994
DrdI GACNNNNNNGTC 1 cut(s) 728
DseDI GACNNNNNNGTC 1 cut(s) 728
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 302, 675
Eco24I GRGCYC 2 cut(s) 108, 237
Eco47I GGWCC 2 cut(s) 451, 1117
Eco53kI GAGCTC 1 cut(s) 106
Eco81I CCTNAGG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 2 cut(s) 451, 1117
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 302, 675
EcoT38I GRGCYC 2 cut(s) 108, 237
EgeI GGCGCC 1 cut(s) 529
EheI GGCGCC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 302, 675
FaeI CATG 5 cut(s) 306, 414, 649, 679, 889
FaqI GGGAC 1 cut(s) 437
FatI CATG 5 cut(s) 302, 410, 645, 675, 885
FauI CCCGC 2 cut(s) 384, 496
FblI GTMKAC 3 cut(s) 720, 732, 780
Fnu4HI GCNGC 7 cut(s) 249, 312, 356, 359, 386, 531, 694
FokI GGATG 3 cut(s) 119, 208, 743
FriOI GRGCYC 2 cut(s) 108, 237
Fsp4HI GCNGC 7 cut(s) 249, 312, 356, 359, 386, 531, 694
FspBI CTAG 1 cut(s) 918
GlaI GCGC 3 cut(s) 291, 384, 529
GluI GCNGC 7 cut(s) 249, 312, 356, 359, 386, 531, 694
HaeII RGCGCY 2 cut(s) 293, 531
HaeIII GGCC 4 cut(s) 328, 674, 716, 806
HapII CCGG 4 cut(s) 72, 176, 475, 534
HgaI GACGC 1 cut(s) 619
HhaI GCGC 3 cut(s) 292, 385, 530
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 5 cut(s) 306, 414, 649, 679, 889
Hin6I GCGC 3 cut(s) 290, 383, 528
HinP1I GCGC 3 cut(s) 290, 383, 528
HincII GTYRAC 2 cut(s) 733, 781
HindII GTYRAC 2 cut(s) 733, 781
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 4 cut(s) 170, 443, 785, 1007
HpaII CCGG 4 cut(s) 72, 176, 475, 534
HphI GGTGA 6 cut(s) 72, 100, 661, 752, 943, 1027
Hpy166II GTNNAC 3 cut(s) 721, 733, 781
Hpy188I TCNGA 7 cut(s) 193, 277, 333, 596, 641, 838, 999
Hpy188III TCNNGA 4 cut(s) 124, 392, 634, 980
Hpy8I GTNNAC 3 cut(s) 721, 733, 781
Hpy99I CGWCG 3 cut(s) 497, 522, 785
HpyAV CCTTC 4 cut(s) 58, 442, 564, 646
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 3 cut(s) 251, 753, 965
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 355, 385, 484, 539, 548
HpyF3I CTNAG 5 cut(s) 393, 498, 614, 837, 852
HpySE526I ACGT 1 cut(s) 795
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 5 cut(s) 306, 414, 649, 679, 889
HspAI GCGC 3 cut(s) 290, 383, 528
KasI GGCGCC 1 cut(s) 527
KpnI GGTACC 1 cut(s) 1041
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 9 cut(s) 77, 120, 284, 298, 321, 514, 630, 636, 994
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 4 cut(s) 209, 232, 556, 596
Lsp1109I GCAGC 3 cut(s) 235, 342, 705
LweI GCATC 2 cut(s) 762, 952
MaeI CTAG 1 cut(s) 918
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 2 cut(s) 740, 1102
MalI GATC 9 cut(s) 79, 122, 286, 300, 323, 516, 632, 638, 996
MboI GATC 9 cut(s) 77, 120, 284, 298, 321, 514, 630, 636, 994
MboII GAAGA 3 cut(s) 416, 448, 698
MflI RGATCY 2 cut(s) 120, 994
MhlI GDGCHC 4 cut(s) 108, 182, 221, 237
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 3 cut(s) 61, 211, 1001
MluNI TGGCCA 1 cut(s) 674
Mly113I GGCGCC 1 cut(s) 528
MlyI GAGTC 2 cut(s) 794, 1001
Mox20I TGGCCA 1 cut(s) 674
MroNI GCCGGC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 674
MseI TTAA 1 cut(s) 1044
MslI CAYNNNNRTG 1 cut(s) 890
Msp20I TGGCCA 1 cut(s) 674
MspI CCGG 4 cut(s) 72, 176, 475, 534
MspR9I CCNGG 2 cut(s) 177, 229
Mva1269I GAATGC 1 cut(s) 1093
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 6 cut(s) 257, 355, 385, 484, 539, 548
NaeI GCCGGC 1 cut(s) 73
NarI GGCGCC 1 cut(s) 528
NciI CCSGG 1 cut(s) 177
NcoI CCATGG 2 cut(s) 302, 675
NdeII GATC 9 cut(s) 77, 120, 284, 298, 321, 514, 630, 636, 994
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 5 cut(s) 306, 414, 649, 679, 889
NlaIV GGNNCC 4 cut(s) 234, 453, 529, 1039
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 740, 1102
NspI RCATGY 1 cut(s) 414
PaqCI CACCTGC 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 711
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PctI GAATGC 1 cut(s) 1093
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 170, 443
PflMI CCANNNNNTGG 1 cut(s) 324
PkrI GCNGC 7 cut(s) 250, 313, 357, 360, 387, 532, 695
Ple19I CGATCG 1 cut(s) 517
PleI GAGTC 2 cut(s) 793, 1001
PluTI GGCGCC 1 cut(s) 531
PpsI GAGTC 2 cut(s) 793, 1001
PpuMI RGGWCCY 2 cut(s) 451, 1117
PshAI GACNNNNGTC 1 cut(s) 1109
Psp124BI GAGCTC 1 cut(s) 108
Psp5II RGGWCCY 2 cut(s) 451, 1117
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 4 cut(s) 234, 453, 529, 1039
PspPI GGNCC 4 cut(s) 451, 714, 804, 1117
PspPPI RGGWCCY 2 cut(s) 451, 1117
PsuI RGATCY 2 cut(s) 120, 994
PvuI CGATCG 1 cut(s) 517
RsaI GTAC 3 cut(s) 876, 953, 1039
RsaNI GTAC 3 cut(s) 875, 952, 1038
RseI CAYNNNNRTG 1 cut(s) 890
SacI GAGCTC 1 cut(s) 108
SalI GTCGAC 2 cut(s) 731, 779
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 1 cut(s) 1044
SatI GCNGC 7 cut(s) 249, 312, 356, 359, 386, 531, 694
Sau3AI GATC 9 cut(s) 77, 120, 284, 298, 321, 514, 630, 636, 994
Sau96I GGNCC 4 cut(s) 451, 714, 804, 1117
SchI GAGTC 2 cut(s) 794, 1001
ScrFI CCNGG 2 cut(s) 177, 229
SduI GDGCHC 4 cut(s) 108, 182, 221, 237
SfaNI GCATC 2 cut(s) 762, 952
SfoI GGCGCC 1 cut(s) 529
SinI GGWCC 2 cut(s) 451, 1117
SmiMI CAYNNNNRTG 1 cut(s) 890
Sse9I AATT 3 cut(s) 61, 211, 1001
SsiI CCGC 8 cut(s) 83, 312, 359, 377, 386, 429, 503, 531
SspDI GGCGCC 1 cut(s) 527
SspMI CTAG 1 cut(s) 918
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 175, 227
StyI CCWWGG 2 cut(s) 302, 675
TaiI ACGT 1 cut(s) 798
TaqI TCGA 6 cut(s) 102, 446, 517, 732, 780, 906
TasI AATT 3 cut(s) 61, 211, 1001
TatI WGTACW 1 cut(s) 951
TauI GCSGC 4 cut(s) 314, 361, 388, 533
TfiI GAWTC 2 cut(s) 170, 443
Tru1I TTAA 1 cut(s) 1044
Tru9I TTAA 1 cut(s) 1044
TscAI CASTG 3 cut(s) 250, 553, 916
TseFI GTSAC 2 cut(s) 740, 1102
TseI GCWGC 3 cut(s) 248, 355, 693
Tsp45I GTSAC 2 cut(s) 740, 1102
TspDTI ATGAA 1 cut(s) 875
TspRI CASTG 3 cut(s) 250, 553, 916
Van91I CCANNNNNTGG 1 cut(s) 324
VpaK11BI GGWCC 2 cut(s) 451, 1117
XceI RCATGY 1 cut(s) 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 300
XmiI GTMKAC 3 cut(s) 720, 732, 780
XspI CTAG 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.