Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

173042 .. 174317

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgatcgccagaaacgacaaagtgggattggtcaaattggcagctttaccatgcccacgtgcacctcctaatcctcaagccctacctcctctggatggagtttggtgggtttgggccttcgggcttcagcccatcccactctccgacgtcagcatggtggtcggagtggaaatagatcatgctttcttcataaatgggaggctcttctcccccaagaaatcagacttctgcaacagtcctaatgtctccaccaacagcccccgatcgcttgacttcaacgccccaagcagatccgataagaagaaatccaaatccgcagtcaaagacgactccaaagccgcaattataagcttcggcctcctcaaccagataccccacctcttcgaccccaaagtcctcgccgccatgacccgcgccgtctccgacgtctcccagaccctctctgtcctcaacgccctcggcgactatcccgaccacgaggccttcgacaccgccaaggccaagctcgcctacaacaagcccactccctccaagaagctcgaggacctcgtcctctccccccgcccctctgatgccgaccacttccagtggtgtttcaatgttctccacttcatgggtcatccaaaaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

210

Amino Acids

23.0

Weight (kDa)

8.96

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AasI	GACNNNNNNGTC	1 cut(s)	392
AatII	GACGTC	2 cut(s)	150, 429
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccII	CGCG	1 cut(s)	414
AciI	CCGC	6 cut(s)	315, 339, 402, 412, 492, 562
AclWI	GGATC	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	110
AcvI	CACGTG	1 cut(s)	59
AcyI	GRCGYC	2 cut(s)	147, 426
AfiI	CCNNNNNNNGG	2 cut(s)	95, 613
AgsI	TTSAA	2 cut(s)	277, 598
AluBI	AGCT	4 cut(s)	44, 351, 505, 538
AluI	AGCT	4 cut(s)	44, 351, 505, 538
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	3 cut(s)	250, 424, 433
Alw44I	GTGCAC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	4 cut(s)	114, 355, 480, 498
ApaLI	GTGCAC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	2 cut(s)	114, 544
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	476
BbrPI	CACGTG	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	89, 140
BceAI	ACGGC	1 cut(s)	401
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BcoDI	GTCTC	3 cut(s)	250, 424, 433
BisI	GCNGC	3 cut(s)	42, 339, 402
BlsI	GCNGC	3 cut(s)	43, 340, 403
Bme18I	GGWCC	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	114, 544
BmsI	GCATC	1 cut(s)	562
BpuEI	CTTGAG	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	59
BsaHI	GRCGYC	2 cut(s)	147, 426
BsaJI	CCNNGG	2 cut(s)	457, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 613
Bse1I	ACTGG	1 cut(s)	586
BseDI	CCNNGG	2 cut(s)	457, 495
BseGI	GGATG	3 cut(s)	100, 132, 619
BseLI	CCNNNNNNNGG	2 cut(s)	95, 613
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	2 cut(s)	78, 350
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	266
BshFI	GGCC	4 cut(s)	116, 357, 482, 500
BsiEI	CGRYCG	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	539
BslI	CCNNNNNNNGG	2 cut(s)	95, 613
BsmAI	GTCTC	3 cut(s)	250, 424, 433
BsmBI	CGTCTC	2 cut(s)	424, 433
BsnI	GGCC	4 cut(s)	116, 357, 482, 500
BsoBI	CYCGRG	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	4 cut(s)	3, 175, 263, 290
BspACI	CCGC	6 cut(s)	315, 339, 402, 412, 492, 562
BspANI	GGCC	4 cut(s)	116, 357, 482, 500
BspFNI	CGCG	1 cut(s)	414
BspPI	GGATC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	457, 495
BssMI	GATC	4 cut(s)	3, 175, 263, 290
BssNI	GRCGYC	2 cut(s)	147, 426
BssSI	CACGAG	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	2 cut(s)	209, 386
BstACI	GRCGYC	2 cut(s)	147, 426
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	507
BstF5I	GGATG	3 cut(s)	100, 132, 619
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	4 cut(s)	6, 178, 266, 293
BstMAI	GTCTC	3 cut(s)	250, 424, 433
BstMBI	GATC	4 cut(s)	3, 175, 263, 290
BstMCI	CGRYCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	4 cut(s)	116, 357, 482, 500
BtsCI	GGATG	3 cut(s)	100, 132, 619
BtsIMutI	CAGTG	1 cut(s)	593
Cac8I	GCNNGC	1 cut(s)	507
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	114, 544
CviAII	CATG	5 cut(s)	51, 154, 179, 406, 613
DpnI	GATC	4 cut(s)	5, 177, 265, 292
DpnII	GATC	4 cut(s)	3, 175, 263, 290
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	209, 386
EarI	CTCTTC	2 cut(s)	209, 386
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	110
Eco72I	CACGTG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	2 cut(s)	424, 433
FaeI	CATG	5 cut(s)	54, 157, 182, 409, 616
FaiI	YATR	7 cut(s)	52, 155, 180, 191, 347, 407, 614
FatI	CATG	5 cut(s)	50, 153, 178, 405, 612
FauI	CCCGC	2 cut(s)	419, 569
Fnu4HI	GCNGC	3 cut(s)	42, 339, 402
FokI	GGATG	3 cut(s)	107, 119, 606
Fsp4HI	GCNGC	3 cut(s)	42, 339, 402
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	3 cut(s)	42, 339, 402
HaeIII	GGCC	4 cut(s)	116, 357, 482, 500
HhaI	GCGC	1 cut(s)	416
Hin1I	GRCGYC	2 cut(s)	147, 426
Hin1II	CATG	5 cut(s)	54, 157, 182, 409, 616
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	6 cut(s)	145, 164, 223, 295, 424, 571
Hpy188III	TCNNGA	2 cut(s)	92, 470
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	2 cut(s)	149, 428
HpyAV	CCTTC	2 cut(s)	127, 493
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	3 cut(s)	58, 147, 426
HpyCH4V	TGCA	2 cut(s)	62, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpySE526I	ACGT	3 cut(s)	58, 147, 426
Hsp92I	GRCGYC	2 cut(s)	147, 426
Hsp92II	CATG	5 cut(s)	54, 157, 182, 409, 616
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	4 cut(s)	3, 175, 263, 290
LguI	GCTCTTC	1 cut(s)	209
LpnPI	CCDG	5 cut(s)	22, 77, 380, 446, 599
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	562
MaeII	ACGT	3 cut(s)	58, 147, 426
MalI	GATC	4 cut(s)	5, 177, 265, 292
MboI	GATC	4 cut(s)	3, 175, 263, 290
MboII	GAAGA	4 cut(s)	178, 196, 313, 373
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	2 cut(s)	35, 342
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	3 cut(s)	142, 168, 447
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	506
NdeII	GATC	4 cut(s)	3, 175, 263, 290
NlaIII	CATG	5 cut(s)	54, 157, 182, 409, 616
NmeAIII	GCCGAG	1 cut(s)	438
PaeR7I	CTCGAG	1 cut(s)	539
PceI	AGGCCT	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	4 cut(s)	12, 459, 483, 546
PflFI	GACNNNGTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	3 cut(s)	43, 340, 403
Ple19I	CGATCG	1 cut(s)	266
PleI	GAGTC	1 cut(s)	323
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	323
Ppu21I	YACGTR	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	544
PsiI	TTATAA	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	544
PspCI	CACGTG	1 cut(s)	59
PspPI	GGNCC	2 cut(s)	114, 544
PspPPI	RGGWCCY	1 cut(s)	544
PspXI	VCTCGAGB	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	290
PsyI	GACNNNGTC	1 cut(s)	548
PvuI	CGATCG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	209
SatI	GCNGC	3 cut(s)	42, 339, 402
Sau3AI	GATC	4 cut(s)	3, 175, 263, 290
Sau96I	GGNCC	2 cut(s)	114, 544
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	562
Sfr274I	CTCGAG	1 cut(s)	539
SinI	GGWCC	1 cut(s)	544
SlaI	CTCGAG	1 cut(s)	539
SmlI	CTYRAG	2 cut(s)	75, 539
SmoI	CTYRAG	2 cut(s)	75, 539
Sse9I	AATT	2 cut(s)	35, 342
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	6 cut(s)	315, 339, 402, 412, 492, 562
StuI	AGGCCT	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	3 cut(s)	61, 150, 429
TaqI	TCGA	3 cut(s)	384, 486, 540
TasI	AATT	2 cut(s)	35, 342
TauI	GCSGC	2 cut(s)	341, 404
TscAI	CASTG	1 cut(s)	593
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	178, 601
TspRI	CASTG	1 cut(s)	593
Tth111I	GACNNNGTC	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	613
VneI	GTGCAC	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	544
XhoI	CTCGAG	1 cut(s)	539
ZraI	GACGTC	2 cut(s)	148, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.